BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06520.1
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349916 jgi|Araly1|349916|fgenesh1_pg.C_scaffold_6000509 1803 0.0
Ahg937685 jgi|Araly1|937685|scaffold_501876.1 141 2e-32
Ahg952354 jgi|Araly1|952354|scaffold_63600001.1 111 2e-23
Ahg937695 jgi|Araly1|937695|scaffold_501886.1 111 2e-23
Ahg350409 jgi|Araly1|350409|fgenesh1_pg.C_scaffold_6001002 76.8 6e-13
Ahg349490 jgi|Araly1|349490|fgenesh1_pg.C_scaffold_6000083 67.6 3e-10
> Ahg349916 jgi|Araly1|349916|fgenesh1_pg.C_scaffold_6000509
Length=1689
Score = 1803 bits (976), Expect = 0.0
Identities = 1451/1670 (87%), Gaps = 74/1670 (4%)
Strand=Plus/Plus
Query 194 TGGATATGCCTCTGCTGGCTCCACCTGTCAACTTCTCACACCTTCCTCTAGGGATCACTT 253
||||||||||| || |||||||| |||| ||| || |||||||||||||||||||
Sbjct 2 TGGATATGCCTAAGC---CTCCACCTATCAAGTTCGCATACCTTCCTCTAGGGATCACGA 58
Query 254 TCACGCGAAAGGAGCTTGAGCTTATCAAGCTCACAGCGCAGTTTGTGGCTGTTTATGGGA 313
||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 59 TCACGCGCAAGGAGGTTGATATTATCAAGCTCACAGCGCAGTTTGTGGCTGTTTATGGGA 118
Query 314 AGTATTTTCAGAGGGAACTGACGACGAGAGTTG-TTGAGAGTCCTCTGTTTGAGTTTTTG 372
||||||||| | | ||| |||||| ||||| || ||| || |||||||||||||||| ||
Sbjct 119 AGTATTTTCGGCGCGAATTGACGATGAGAG-TGTTTGGGAATCCTCTGTTTGAGTTTATG 177
Query 373 AAACCAACTGACAGTAGGAACAGTTTTTACACGCGGATTATTCTCGGGTA-TCAGGGTGT 431
|| ||||||||||| |||||| ||||||||||| || ||||||||||||| || | ||||
Sbjct 178 AAGCCAACTGACAGCAGGAACCGTTTTTACACGGGGCTTATTCTCGGGTATTC-GAGTGT 236
Query 432 GTTAATGCCTTCCCAAAAGCTGAAGACG-A-A--G--AGT------GAAGTTTTTGATGG 479
|||||||||||||||||||||||||||| | | | ||| |||||||||||||
Sbjct 237 GTTAATGCCTTCCCAAAAGCTGAAGACGAAGAGTGATAGTACGAGGGAAGTTTTTGATGC 296
Query 480 TTTCTCCAAGCTTATTGCTCAAGTGCCTGTAAAGGATGAGGAT-GACGTGGAGATGGCTA 538
||||||| ||||| ||||||||||||||| |||||| |||||| || |||||||| |||
Sbjct 297 TTTCTCCCAGCTTCTTGCTCAAGTGCCTGAAAAGGAGGAGGATGGA-GTGGAGATTGCTT 355
Query 539 TGACTGATTTGCATGCTTATGAATACTTTGCTAACATGTCCATTAATGATTTACGAG-CT 597
|||||||||||||||||||||| || ||||||||||||| || || | | || | ||
Sbjct 356 TGACTGATTTGCATGCTTATGAGTATTTTGCTAACATGT---TT-CTG-TCT-CG-GTCT 408
Query 598 CCGGCTCCTGTCAAGTTTGCATTCCTTACTAGAGGGGTAACGTTCACGCGCAATGAGCTT 657
|| || ||||||||| ||||| || ||| |||| ||||| |||||||||| ||| ||
Sbjct 409 CC-ACT--TGTCAAGTTCCCATTCTTTCCTAAAGGGATAACGATCACGCGCAAGGAGATT 465
Query 658 GATACTATTAAGCTCACAGCACAGTTTGTGGCAGTTTATGGGACCCT-TTTTCGGACAGA 716
|||| ||| ||||||||||| ||||||||||| || ||||||| | ||||||| ||
Sbjct 466 GATATTATAAAGCTCACAGCGCAGTTTGTGGCTGTGTATGGGA-AGTATTTTCGGGTGGA 524
Query 717 ATTGATGAAGAGAGTGTTTAT-AAGCCCTAAATTTGACTTTTTTAAGTCAACTGATAGCA 775
||||||||||| |||| | || || |||| | ||||| ||| | ||||||||||||||||
Sbjct 525 ATTGATGAAGAAAGTGGTAATGAA-CCCTCAGTTTGAGTTTGTGAAGTCAACTGATAGCA 583
Query 776 AGTGCTCTTTTTAC-TTGCGGCTTGTTGATGGGTATTCGAGAGTG-TTAAGGCGTTCCAG 833
||| |||||||||| | ||||||||||||||| |||||| ||| |||| ||||||||
Sbjct 584 AGTACTCTTTTTACAAT-AGGCTTGTTGATGGGTTTTCGAGGGTGTTTAA-GCGTTCCAT 641
Query 834 AAAGAATGGTGCTGGTTTGGGGGAAGTTGTTGTTGGTTTTCTCAAGCTTCTTGATCAAGT 893
||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 642 TAAGAATGGTGCTGGTTTGGGGGAAGTTCTTGATGGTTTTTTCAAGCTTCTTGATCAAGC 701
Query 894 TGTTGAAAAGAAAGATGCAGTGGAGATGGCTTTGACTGATTTGCATGCTTTAGAGTTTTT 953
| |||||||| | || | ||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 702 TCTTGAAAAGCAGGAGGGAGTGGAGATGGCTATGACTGATTTGCATGCTTTCGAGTTTTT 761
Query 954 TGCTAACGTGGACGG-TGGCGTGTTGCAACCACGACCTGAACAATACCATCC----A--A 1006
|||||||||||| || || |||||||||||||| |||||||||||||| ||| | |
Sbjct 762 TGCTAACGTGGA-GGATGACGTGTTGCAACCACTACCTGAACAATACCTTCCAATGATGA 820
Query 1007 TGATGCCAACAGTACCACCGCTAATTATGCCTCAACTGGGATCTCAGTTTACTCAACTTC 1066
||||||| || ||||||| |||||| ||| || ||| ||||||||||||||||| ||||
Sbjct 821 TGATGCCGCCACTACCACCTCTAATTCTGCGTCCACTTGGATCTCAGTTTACTCATCTTC 880
Query 1067 AAGTTCCTCAACCTTCATGTTCTCCTCCAGTGAGGATGATGT-CACCTCCTAGGCCACAG 1125
||| | | | |||| | || ||| || | | |||| ||| ||||||||
Sbjct 881 AAG---GT----C--C---TTCT-C-ACA-TGATGA-AACCTACACCACCTCGGCCACAG 924
Query 1126 AATGATTTGCAATCGGGTCAAAGCAATTCAAATAAAGCTCCTGCGAGTGTGGCACCTATT 1185
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 925 AATGATTTGCAATCGGGTCAAAACAATTCAAATAAAGCTCCTGCGAGTGTGGCAACTATT 984
Query 1186 GAGCCACCTCCAGAAATCAGAAGTTGTGTCGAGAACACTGCACTTA-TTGTTTCCAAAAA 1244
|||||||||||||||||||||| || | || |||| ||||||| || |||||||||||||
Sbjct 985 GAGCCACCTCCAGAAATCAGAAATTTTATCCAGAAGACTGCAC-TATTTGTTTCCAAAAA 1043
Query 1245 TGGGTTGGAGATTGAAAGAAAGATGATGGAACTTAGTATGAATGATGCAAGACACAGATT 1304
||||||||||| || ||||| | | ||||||||||||||||||||| ||||| |||||||
Sbjct 1044 TGGGTTGGAGACTGCAAGAAGGTTCATGGAACTTAGTATGAATGATACAAGATACAGATT 1103
Query 1305 TGTGTGGAGCACTGACCCTTATCACGCATTTTATCAGCTCAAGCTTGCAGAATACCGTGC 1364
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1104 TGTGTGGAGCACTCACCCTTATCACGCATTTTATCAGCTTAAGCTTGCAGAATACTGTGC 1163
Query 1365 TCAGAATCAAGATAGAGCTCACGATATCCAACCTAATGTTCTGAGATCTTTCGGTTTTGG 1424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1164 TCAGAATCAAGATAGAGCTCAGGATATCCAACCTAATGTTCTGAGATCTTTCGGTGTTGG 1223
Query 1425 ATTTGAATTCCCTGAAAAGGAGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGC 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 ATTTGAATTCCCTGAAAAGGAGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGC 1283
Query 1485 ACAGTTTATGGCGCGGTACGGGATGAATTTTGTGCAGGG-TTTGAGGAAGAGAGTGGTTG 1543
||||||||||||||||||||||||||||| |||| ||| ||||| ||||| ||||||||
Sbjct 1284 GCAGTTTATGGCGCGGTACGGGATGAATTTCGTGC-GGGATTTGAAGAAGATAGTGGTTG 1342
Query 1544 GGAACCCTCAGTTTAAGTTTTTGGAGTCAACTAATAATAGCAGGTTCAGTTTTTACAATG 1603
||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||
Sbjct 1343 AGAACCCTAAGTTTGAGTTTTTGGAGTCAACTAGTA---GCAGGTTCAGTTTTTACAATA 1399
Query 1604 GGCTTGTTATTGCGTATTCAAGGGTTTTAATGCCTTCCAAAATGCTGAGCAAGAGTGATG 1663
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1400 GGCTTGTTATTGCGTATTCAAGGGTATTAATGCCTTCCAAAATGCTGAGCAAGAGTGATG 1459
Query 1664 ATTGTACGGCGACCGTTGTTGATGGTTTTCTC-AGTTGTCTTCAATTGGAAAAGCGAGAG 1722
||| ||||||||| ||| ||||||||||| || | |||||||||||||||||||| ||||
Sbjct 1460 ATTTTACGGCGACTGTTCTTGATGGTTTTTTCCA-TTGTCTTCAATTGGAAAAGCAAGAG 1518
Query 1723 GAGGGAGTGGATATTGATATGATTGATTTGCTTGACTGTTTTGCTCGTTTGGAGGATGCA 1782
|||||||||||||| | ||||||||||||||||||| ||||||| |||||||||||| |
Sbjct 1519 GAGGGAGTGGATATGGCCATGATTGATTTGCTTGACTATTTTGCTAGTTTGGAGGATGAA 1578
Query 1783 GACTATTCTGCTAACGTCCCACAACCTCAACACCTTTCAACACAAATGCA 1832
||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1579 GACTATTCTGCTAACGTGCTACAACCTCAACACCTTTCAACACAAATGCA 1628
Score = 182 bits (98), Expect = 1e-44
Identities = 294/385 (76%), Gaps = 27/385 (7%)
Strand=Plus/Plus
Query 204 TCTG-CT-GG-CTCCACCTGTCAACTTCTCACACCTTCCTCTAGGGATCACTTTCACGCG 260
|||| || || |||||| |||||| ||| || | ||||| |||||| || |||||||
Sbjct 396 TCTGTCTCGGTCTCCACTTGTCAAGTTCCCATTCTTTCCTAAAGGGATAACGATCACGCG 455
Query 261 AAAGGAGCTTGAGCTTATCAAGCTCACAGCGCAGTTTGTGGCTGTTTATGGGAAGTATTT 320
|||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 456 CAAGGAGATTGATATTATAAAGCTCACAGCGCAGTTTGTGGCTGTGTATGGGAAGTATTT 515
Query 321 TCAGAG-GGAACTGACGACGAGAGTTGTTGA-GAGTCCTCTGTTTGAGTTTTTGAAACCA 378
|| | | |||| ||| || || || || | | || |||| |||||||||| |||| ||
Sbjct 516 TC-GGGTGGAATTGATGAAGAAAG-TGGTAATGAACCCTCAGTTTGAGTTTGTGAAGTCA 573
Query 379 ACTGACAGTAGGAACAGTTTTTACACGCGGATTATT-CTCGGG-TATC-AGGGTGTGTTA 435
||||| || | | || |||||||| || || || | ||| | || ||||||| |||
Sbjct 574 ACTGATAGCAAGTACTCTTTTTACAATAGGCTTGTTGAT-GGGTTTTCGAGGGTGT-TTA 631
Query 436 ATGCCTTCCCA-AAAG-CTGAAGAC--G-AAGAGTGAAGTTTTTGATGGTTTCTCCAAGC 490
| || || ||| ||| || | | | | | |||||| |||||||||| | |||||
Sbjct 632 A-GCGTT-CCATTAAGAATGGTG-CTGGTTTGGGGGAAGTTCTTGATGGTTTTTTCAAGC 688
Query 491 TTATTGCTCAAG-TGCCTGTAAAGGATGAGGATGACGTGGAGATGGCTATGACTGATTTG 549
|| ||| ||||| | | || |||| | |||| || ||||||||||||||||||||||||
Sbjct 689 TTCTTGATCAAGCT-CTTGAAAAGCAGGAGG--GA-GTGGAGATGGCTATGACTGATTTG 744
Query 550 CATGCTTAT-GAATACTTTGCTAAC 573
||||||| | || | |||||||||
Sbjct 745 CATGCTT-TCGAGTTTTTTGCTAAC 768
> Ahg937685 jgi|Araly1|937685|scaffold_501876.1
Length=2944
Score = 141 bits (76), Expect = 2e-32
Identities = 255/336 (76%), Gaps = 33/336 (10%)
Strand=Plus/Plus
Query 1433 TCCCTGAAAAGGAGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGCACAGTTTA 1492
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1450 TCCCTGGAAAGGGGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGCGCAGTTTG 1509
Query 1493 TGGCGCGGTACGGG-ATGAATTTTGTGCAGGGTTTGA--GGAAGAGAGTGGT-TGGGAAC 1548
||| |||||| ||| |||| ||||| | | |||| | ||| |||||| | | ||||
Sbjct 1510 TGGTGCGGTATGGGTATGATTTTTG-GT-GTGTTTTAACGGAT-AGAGTG-TCTACGAAC 1565
Query 1549 CCTCAGTTTA--AGTTTTTGGAGTCAACTA-ATAATAGCAGGTTCAGTTTTTACAATGGG 1605
||| ||| |||| ||| | || | |||| |||| ||| |||||||| ||||
Sbjct 1566 --TCATTTTTTCAGTTCTTGAA-TCCTTTCGATAA--GCAG-TTCCGTTTTTACTGTGGG 1619
Query 1606 CTTGTTA-TTGCGTATTCAAGG-GTTTTAATGCCTTCCAAAATGCTGA-GCAAGAGTGAT 1662
||| ||| ||||||| | || || ||| ||||| |||||||||| | ||| ||||
Sbjct 1620 CTT-TTACTTGCGTACACC-GGAGTGCTAAAACCTTCTAAAATGCTGAAG-AAGCCTGAT 1676
Query 1663 GATTGTACGGCGACCGTTG-TTGATGGTTTTCTC-AGTTGTCTTCAA-T-TGGAAAAGC- 1717
| |||||||| | | || |||| |||||| || | | |||||| | ||||| ||
Sbjct 1677 GCTTGTACGGTGGCT-TTACTTGAGGGTTTTTTCCACC-GACTTCAACTGTGGAA--GCT 1732
Query 1718 GAGAGGAGGGAGTGGATATTGATATGATTGATTTGC 1753
| |||||||||||||| | | ||||||||||||||
Sbjct 1733 G-GAGGAGGGAGTGGAAACGGCTATGATTGATTTGC 1767
> Ahg952354 jgi|Araly1|952354|scaffold_63600001.1
Length=1738
Score = 111 bits (60), Expect = 2e-23
Identities = 77/85 (91%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 1433 TCCCTGAAAAGGAGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGCACAGTTTA 1492
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1450 TCCCTGGAAAGGGGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGCGCAGTTTG 1509
Query 1493 TGGCGCGGTACGGG-ATGAATTTTG 1516
||| |||||| ||| |||| |||||
Sbjct 1510 TGGTGCGGTATGGGTATGATTTTTG 1534
> Ahg937695 jgi|Araly1|937695|scaffold_501886.1
Length=1723
Score = 111 bits (60), Expect = 2e-23
Identities = 77/85 (91%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 1433 TCCCTGAAAAGGAGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGCACAGTTTA 1492
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1360 TCCCTGGAAAGGGGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGCGCAGTTTG 1419
Query 1493 TGGCGCGGTACGGG-ATGAATTTTG 1516
||| |||||| ||| |||| |||||
Sbjct 1420 TGGTGCGGTATGGGTATGATTTTTG 1444
> Ahg350409 jgi|Araly1|350409|fgenesh1_pg.C_scaffold_6001002
Length=3426
Score = 76.8 bits (41), Expect = 6e-13
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 1451 CACTCAAGGAGCTTGGTATTATTAAGCTCACAGCACAGTTTATGGCGCGGTACGGGATGA 1510
||||||||||||||||||||||||||||||| || |||||| ||| ||| || || |
Sbjct 47 CACTCAAGGAGCTTGGTATTATTAAGCTCACGGCTCAGTTTGTGGTGCGTTATGGTCCGG 106
Query 1511 ATTTTGTGCAGGGTTTGAGGAAGAGAGTGGTTGGGAACCCTCAGTTTAAGTTTTTG 1566
||||| || | ||| | || || ||||| | |||||||| |||| | ||||||
Sbjct 107 ATTTTCTGTTGCCTTTCAAGAGGACAGTGGATAAGAACCCTCTGTTTGACTTTTTG 162
> Ahg349490 jgi|Araly1|349490|fgenesh1_pg.C_scaffold_6000083
Length=1341
Score = 67.6 bits (36), Expect = 3e-10
Identities = 54/62 (87%), Gaps = 4/62 (6%)
Strand=Plus/Plus
Query 1430 AATTCCCTGAAAAGGAGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGCACAGT 1489
|||| |||| |||| |||||| | | |||||||||||||||||||||||||||| ||||
Sbjct 816 AATT-CCTG--AAGG-GATCACGCGCCAGGAGCTTGGTATTATTAAGCTCACAGCGCAGT 871
Query 1490 TT 1491
||
Sbjct 872 TT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76713753430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5