BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06550.1
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487465 jgi|Araly1|487465|fgenesh2_kg.6__599__AT5G06550.1 2562 0.0
> Ahg487465 jgi|Araly1|487465|fgenesh2_kg.6__599__AT5G06550.1
Length=1624
Score = 2562 bits (1387), Expect = 0.0
Identities = 1545/1624 (95%), Gaps = 0/1624 (0%)
Strand=Plus/Plus
Query 1 GTCAAACATGCCAAAGTGCAAGAATCTGTTGCTAACCTCGAAGCGACGTAAATCCAAATC 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 GTCAAACATGCCAAAGTACAAGAATCTGTTGCTAACCTCGAAGCGACGTAAATCGAAATT 60
Query 61 CAAAAGACTAAAGCTCCATCAGCATGAACCTGAGTCTCTGTTTCCAGAGAAGGAGGTAGA 120
||||| || |||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CAAAAAACAAAAGCTACATCAGCATGAACCTGAGGCTCTGTTTCCAGAGAAGGAGGTAGA 120
Query 121 AGAGGAAGATGAAGATGAAGGAGGCTTCAAGCTGAAAATTGCAGCTCCTTCTCAAGAGCA 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AGAGGAAGATGAAGATGAAGGAGGCTTCAAGCTGAAAATGGCAGCTCCTTCTCAAGAGCA 180
Query 181 TGGAGTTCAACCTCTGGGAAACCTATATTTCAATCCTGGTGCGGTCAATGTGCGAAACAC 240
||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 181 TGGAGTTCAACCTCTCGGAAACCTGTATTTCAATCCTGGTTCGGTCAATGTGCGAAACAC 240
Query 241 TGGATTAGGTAATCTCCAGATACTCTCAGATGAGCTCGTTTTGGATATTCTAGGTCTTCT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 TGGATTAGGTAATCTCCAGATACTCTCGGATGAGCTCGTTTTGGATATTCTAGGTCTTCT 300
Query 301 TGGCGCCAATCATTTGGGTGTTTTGGCTACTGTAACTAAGTCATTCTATATATTTGCTAA 360
|||||| | |||||||||| |||||||||||||||| || || |||||||| ||||| ||
Sbjct 301 TGGCGCGACTCATTTGGGTATTTTGGCTACTGTAACCAAATCTTTCTATATTTTTGCCAA 360
Query 361 TCATGAGCCTCTCTGGAGAAATCTTGTGTTAGAGGAGTTAAAAGGAGATTTTTTGTTTAA 420
|||||||||||||||||||||||||||||| || ||| |||||||||| |||||||||||
Sbjct 361 TCATGAGCCTCTCTGGAGAAATCTTGTGTTGGAAGAGCTAAAAGGAGAGTTTTTGTTTAA 420
Query 421 TGGGTCGTGGAGATCTACCTATGTAGCTGCTTACCATCCGAAATTCAAGTTTGCTGGAGA 480
||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 421 TGGGTCGTGGAAATCTACCTATGTAGCTGCTTACCACCCGAAATTCAAGTTTTCTGGAGA 480
Query 481 TGGTGAATCGAATTTGAAGATTATAGATTTCTATTCTGATTATCTGTTTCAGAGCTGGTT 540
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 TAGTGAATCGAATTTGAAGATTATAGATTTCTATTCTGATTATTTGTTTCAGAGCTGGTT 540
Query 541 ATGTGCGAATCTTGAAATGAAACCGAAATGGCTTAGAAGAGATAATATCACACGGGTGAG 600
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 541 GTGTGCGAATCTTGAAATGAAACCGAAATGGCTTAGAAGAGACAATATCACACGGGTGAG 600
Query 601 AGGCATTTCTGTTGAAGACTTCATTACAAAGTTTGAGGAGCCGAATAAGCCAGTTTTGTT 660
|||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 601 AGGCATTTCTGTTGAAGAATTCATTACCAAGTTTGAGGAGCCGAATAAGCCTGTTTTGTT 660
Query 661 GGAGGGATGTTTGGATGGTTGGCCTGCTATTGAGAAATGGTCAAGAGATTATCTGACTAA 720
|||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 661 GGAGGGGTGTTTGGATGGTTGGCCTGCTATTCAGAAATGGTCAAGAGATTATTTGATTAA 720
Query 721 GGTGGTTGGTGATGTCGAATTCGCGGTAGGTCCAGTGGAAATGAAGCTCGAGAAGTATTT 780
||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||||| |||||
Sbjct 721 GGTTGTTGGGGATGTCGAATTTGCGGTTGGTCCAGTTGAAATGAAGCTCGAGAAATATTT 780
Query 781 TAGGTATTCTGATGGAGCTAGGGAAGAAAGGCCTTTGTACTTGTTTGATCCAAAGTTTGC 840
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 TAGGTATTCTGATGGAGCTAGGGAAGAAAGGCCTTTGTATTTGTTTGATCCAAAGTTTGC 840
Query 841 AGAGAAAGTTCCGGTTTTGGATTCGGAGTATGATGTTCCTGTCTATTTCAGAGAGGACTT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 841 AGAGAAAGTTCCGGTTTTGGATTCGGAGTATGATGTTCCTGTCTATTTCAGAGAGGATTT 900
Query 901 GTTTGGTGTTTTAGGAAACGAGCGACCTGATTATAGATGGATCATAATTGGTCCAGCCGG 960
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 901 ATTTGGTGTTTTAGGAAACGAACGACCTGATTATAGATGGATCATAATTGGCCCAGCCGG 960
Query 961 ATCAGGATCGTCTTTCCATATTGATCCTAACTCAACATCAGCTTGGAATGCGGTGATCAC 1020
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 961 ATCAGGATCGTCTTTCCACATTGATCCTAACTCAACATCCGCTTGGAATGCGGTGATTAC 1020
Query 1021 AGGGTCGAAGAAATGGGTTTTGTTCCCACCTGATGTGGTTCCTCCGGGTGTGCATCCAAG 1080
||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1021 AGGGTCGAAAAAATGGGTTCTGTTCCCACCGGATGTGGTTCCTCCGGGTGTGCATCCAAG 1080
Query 1081 TCCTGATGGAGCAGAAGTGGCCTGTCCTGTTTCCATAATAGAATGGTTCATGAACTTTTA 1140
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1081 TCCTGATGGAGCAGAAGTGGCCTGTCCTGTCTCCATAATAGAGTGGTTCATGAACTTTTA 1140
Query 1141 TGATGATACTAAGGATTGGGAGAAGAAACCTATTGAGTGTATATGCAAAGCCGGGGAGGT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1141 TGATGATACTAAGGATTGGGAGAAGAAACCTATTGAGTGTATATGCAAAGCTGGGGAGGT 1200
Query 1201 GATGTTTGTACCTAATGGATGGTGGCATCTGGTGATTAACCTGGAGGAATCGATTGCTAT 1260
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1201 GATGTTTGTACCTAATGGATGGTGGCATCTGGTGATCAACCTGGAGGAATCGATTGCTAT 1260
Query 1261 TACTCAGAATTATGCTAGCAGGAGTAATTTGTTGAATGTGTTAGAATTTCTGAAGAAACC 1320
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1261 TACTCAGAATTATGCTAGCAGGAGGAATTTGTTGAATGTGTTAGAATTTCTGAAGAAACC 1320
Query 1321 AAATGCTAAAGAACTTGTCTCCGGGACAACTGACAGAGAGAATTTGCATGACAAATTCAA 1380
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1321 GAATGCTAAAGAGCTTGTCTCCGGAACAACTGACAGAGAGAATTTACATGACAAATTCAA 1380
Query 1381 GAAAGCCATTGAAGAAGCTTACCCGGGGACTATCCaagagttagaaaagaaagcagaaga 1440
||| |||||||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1381 GAAGGCCATTGAAGGAGCTTACCCAGGAACTATCCAAGAGTTAGAAAAGAAAGCAGAAGA 1440
Query 1441 agcaaaaagagccgaagaacaaagaGTTTCTTTCTGGGACTCTGCCAAAACTGATACTTT 1500
||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1441 AGCGAAAAGAGCGGAAGAACAAAGAGTTTCTTTCTGGGACTCTGCCAAAGCTGATGCTTT 1500
Query 1501 CAAGTTTTCTTTCTAAAGACAATCAATACATCATCTTAAATTTTCAATTTTGTAAGATCT 1560
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1501 CAAGTTTTCTTTCTAAAGACAATCAATACATCATCATAAATTTTCAATTTTGTAAGATCT 1560
Query 1561 TCCAGATCCTTTGACAAATGCAGATGCAGAAAATTGTTACCCTTATTTTTATGCTCTTTG 1620
|| ||||||||| ||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct 1561 TCTAGATCCTTTAACAAATGCAGATGGAGGAAATTGTTACCCTTATATTTATGCTCTTTG 1620
Query 1621 TTAC 1624
|||
Sbjct 1621 CTAC 1624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61020572490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5