BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06560.1
Length=2465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487466 jgi|Araly1|487466|fgenesh2_kg.6__600__AT5G06560.1 3011 0.0
Ahg478531 jgi|Araly1|478531|fgenesh2_kg.3__1232__AT3G11850.2 791 0.0
> Ahg487466 jgi|Araly1|487466|fgenesh2_kg.6__600__AT5G06560.1
Length=2219
Score = 3011 bits (1630), Expect = 0.0
Identities = 2019/2192 (92%), Gaps = 85/2192 (4%)
Strand=Plus/Plus
Query 214 ttttttc-tttttctttctcttttttcttttgcttttcgtttACCAGAAAAAGCGATAAG 272
||||||| ||||| ||||||||||| ||||||||||||||||| | | ||
Sbjct 72 TTTTTTCTTTTTTATTTCTCTTTTTGCTTTTGCTTTTCGTTTA-C--------C----AG 118
Query 273 AGAAAAATTATAGGTGGGTCTGTTATTTTCCCGGAAGTTATCATTGAG-ATTCAATAAGA 331
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 119 A-AAAAATTATAGGTGGGTCTGTTATTTTCCCGGAAGTTATCATTGAGAATTCAATAAGA 177
Query 332 GAAGGAGATATCATTAGCTTTCCTGGAAAAATTC-GACTTTTGGGTTTAGTTTTCGTGTT 390
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 GAAGGAGATATCATTAGCTTTCCTGGAAAAATTCAGACTTTTGGGTTTAGTTTTCGTGTT 237
Query 391 CTTGGTGGTTCAACGGTGAAGGAGCTCTATATTGGCGCTAGTTTTGGCTATCGTGGATCT 450
||||||||||||||||| |||||| ||||||||||||||||||| ||| || ||||||
Sbjct 238 CTTGGTGGTTCAACGGTAAAGGAG--CTATATTGGCGCTAGTTTTCGCTTTC--GGATCT 293
Query 451 AGACTACGGAGATAGGTTTTGGTGATTGTTGCTATGTATTTGTGCCATAGTCTGTGATTG 510
||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 294 GGACTACGGAGATAGGTTTTGGTGATTGTTACTATGTATTTGTGCCATAGCCTGGGATTG 353
Query 511 TGAATTTGGATACTGTTACAAGTTATGGATTTGGCAATTGTATCTTCCCCTACTAGGGAT 570
|||||| ||||||||| |||||||||||||||||| ||||||| | ||| |||||||
Sbjct 354 CGAATTT-GATACTGTTTCAAGTTATGGATTTGGCAGTTGTATCGT-CCC--GTAGGGAT 409
Query 571 GTGGTTAGATGTTGTGATTGTGGATGTGA-TTGCTCTCTGAATGGTGCTTCTCCTGGTTC 629
||||||||||||||||||||||||||| | |||||||||||||| ||||||||| |||||
Sbjct 410 GTGGTTAGATGTTGTGATTGTGGATGT-AGTTGCTCTCTGAATGATGCTTCTCCGGGTTC 468
Query 630 TTTGCTTCGGTCTGTGAAGAGAAAATACGAGGAATTTGAGAATGAGAAACTGTTTCACAT 689
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 469 TTTGCTTCGGTCTGTGAAGAGAAAGTACGAGGAATTTGAGAATGAGAAACCATTTCACAT 528
Query 690 ACCGGAGCTGGAGCTGGACTTGTCTTCCAATGCTAAAGTTCAAATTGAGAATGAATTGGA 749
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 529 ACCGGAGCTGGAGCTGGACTTGTCTTCCAATGCTAAAGTCCAAATTGAGAATGAATTGGA 588
Query 750 GCTGCTTAGGGAGACTGTTAGCAGTCAACAGCAGTCGATTCAAGATTTGTATGAGGAGCT 809
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 589 GCTGCTTAGGGAGACTGTTAGCAGCCAACAGCAGTCGATTCAAGATTTGTATGAGGAGCT 648
Query 810 TGATGAAGAGCGGAATGCTGCTTCGACAGCTGCAAGTGAGGCAATGTCTATGATATTGAG 869
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 649 TGACGAAGAGCGGAATGCTGCATCGACAGCTGCAAGTGAGGCAATGTCTATGATATTGAG 708
Query 870 GTTGCAGAGGGATAAAGCTGAACTCCAAATGGAATTGAGACAGTTTAAGCGGTTTGCTGA 929
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 709 GTTGCAGAGGGAGAAAGCTGAACTCCAGATGGAATTGAGACAGTTTAAGCGGTTTGCTGA 768
Query 930 GGAGAAAATGGAGCATGATCAACAAGAGCTTTTGGATCTGGAAGATTTGATATATAAGAG 989
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 769 GGAGAAAATGGAGCATGATCAGCAAGAGCTTTTGGATCTGGAAGATTTGATATATAAGAG 828
Query 990 GGAGCAGACTATTCAGGCTTTGACATTTGAAGCTCAGGCTTATAAGCATAGAATGATGAG 1049
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 829 GGAGCAGACAATTCAGGCTTTGACATATGAAGCTCAGGCTTATAAGCATAGAATGATGAG 888
Query 1050 TTTTGGGTTCACTGAGG-CTGAGGTTGAAACGGAGAAGAACATGCTTAGCCGTAATCCGA 1108
||||||| ||||||||| | |||||||||| |||||||||||||||||||||||| ||||
Sbjct 889 TTTTGGGCTCACTGAGGAC-GAGGTTGAAATGGAGAAGAACATGCTTAGCCGTAACCCGA 947
Query 1109 GCATGATCGAAAATGATTACCAATATGATCTCCCCACATCTGATTACCCTCCTATAAAGT 1168
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 948 GCATGATCGACAATGATTACCAATATGATCTCCCTACATCTGATTACCCTCCTATAAAGT 1007
Query 1169 GCAATGTGAATGAGAACCCAGGTCCCCTGGAGGCTGATATTGATGTTGATGATGTTGAAA 1228
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GCAATGTGAATGAAAACCCAGGTCCCCTGGAGGCTGATATTGATGTTGATGATGTTGAAA 1067
Query 1229 AGTACCCATTGGCTGATTCACCTCAC--CC---AT--T--GAAGACTTTGGAACGAAGGA 1279
|||| |||||||||||||||||||| || || | |||||||||||||||| |||
Sbjct 1068 AGTATCCATTGGCTGATTCACCTCATGGCCGGGATAATTTGAAGACTTTGGAACGACGGA 1127
Query 1280 TAAGTCAGATGGAGAGAAATCCTAGCTTTACTCAGCCTACTGGTGATGTATCTGGAGGGA 1339
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1128 TAAGTCAGATGGAGAGAAATCCTAGCTTTACTCAGTCTACTGGTGATGTATCCGGAGGGA 1187
Query 1340 GACATTATACAGAGAAGAACGTGGTTGGTCAGAGTCCTAGGCATCAGAGACATTTCAGGA 1399
|| ||||||| ||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 1188 GATATTATACGGAGAAGATGGTGGTTGGTCAGAGTCCTAGGCAGCAGAGACACTTCAGGA 1247
Query 1400 GGGTTTCCACTGGTAGTGCAAGTTCACTTTTGGGAACAACTAGAGAAAAAAGGCTTGATT 1459
||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||| |
Sbjct 1248 GGGTTTCCACTGGTAGTTCAAGTTCACTTTTGGGAACAACTAGGGAACAAAGGCCTGACT 1307
Query 1460 TTTCTAATGATTCCCCAAGGTCCAACAATGGTAGCTTCAGGAAAATGGAAGATCCCCCAT 1519
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1308 TTTCCAATGATTCCCCAAGGTCCAACAATGGTAGCTTCAAGAAAATGGAAGATCCCTCAT 1367
Query 1520 ATGCAGCTGGTAATTCCTTTGCAAGGGATAAGGGTGACTCATCGGAAATAGGAGATAATG 1579
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1368 ATGCAGCTGGTAATTCCTTTGCAAAGGATAAGGGTGACTCATCGGAAATAGGAGATAATG 1427
Query 1580 ACATGAATGATAGAGTTTATACCATTGACTCTGTCCATCACAGTGTATCTCATAGTGGTA 1639
|||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 1428 ACATGAATGATAGAGTTTATACCATTGACTCTGTCCGTCACGGCGTATCTCATAGTGGTG 1487
Query 1640 CTGCTGAGCAAAAGTTTAAGAATGACACTGCTGATGGTTATGCAATGTCTCCGAGAGAAA 1699
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1488 CTGCTGAGCAGAAGTTTAAGAATGACACTGCTGATGGTTATGCGATGTCTCCGAGAGAAA 1547
Query 1700 TATCGAATCAGCCGGATCTTGGTGATCCTGAAATATCGAAACTTTACATGAGACTTCAAG 1759
|||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 1548 TATCGAATCAACCGGATCTGGGTGATCCTGATATATCAAAACTCTACATGAGACTTCAAG 1607
Query 1760 CACTAGAGGCTGACAGGGAATCAATGAGACAGGCGATTATGTCGATGAGGACTGAGAAAG 1819
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 CACTAGAAGCTGACAGGGAATCAATGAGACAGGCGATTATGTCGATGAGGACTGAGAAAG 1667
Query 1820 CACAGATGGTTCTGTTGAAAGAAATTGCCCAACATCTGTCAAAGGATGTTGTCCCAGAAC 1879
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1668 CACAGATGGTTCTGTTGAAAGAAATTGCCCAACATCTGTCAAAGGATGTTATCCCAGAAC 1727
Query 1880 GTAGATTGCCTCTGCGGAAAACATCTATTATTGGAGCATTCAACTTCATATCTGTCTTTA 1939
|||||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 1728 GTAGATTGCCACTGCGGAAAGCATCTATTGTTGGAGCATTCAATTTCATATCTGTCTTTA 1787
Query 1940 AGTGGATCACATCTTTTGTTTTCTGGAGAAGAAAGGCTCGTCGAAGCAAATACATGAACG 1999
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1788 AGTGGATCACATCTTTTGTTTTCTGGAGAAAAAAGGCTCGTCGAAGCAAATACATGAACG 1847
Query 2000 GGGTACAAGGGAACAACATGGGATTGCAAATGCTTCTAGAAAAGACTCCTCGAATACGGC 2059
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1848 GGGTGCAAGGGAACAACATGGGATTGCAAATGCTTCTAGAAAAGACTCCTCGGATACGGC 1907
Query 2060 AATGGAGATGTCTCTCAAGCACACAAGTGTGAAATTTGGTTTGCAGCGCATAATGTGAAT 2119
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1908 AATGGAGATGTCTATCAAGCACACAAGTGTGAAATTTGGTTTGAAGGGCATAATGTGAAT 1967
Query 2120 TACTTTGTGAAA-GTACTTACTTTC--TC-CATCTTCATGGTTTTTACTGAGAAAAATGA 2175
|||||||||||| ||| || |||| || ||| | ||||||||| |||||| ||||||
Sbjct 1968 TACTTTGTGAAAAGTAGGTA-TTTCCATCTCAT-T-CATGGTTTT-ACTGAGGAAAATGG 2023
Query 2176 TTTTTCTCTAATGTGCAGTTTTTATCTTTCTTTGCTTGGTGTATTTGCCATATGTCATTT 2235
||||| | | | | ||||| ||||| || || | | ||||||||||| ||||||
Sbjct 2024 TTTTT-T-T--T-T----TTTTT--CTTTCCTT-CTAG-T--ATTTGCCATATTTCATTT 2068
Query 2236 GTTGT--T-G-GG--TTGGAATGG---G---G---TTTGATGATTTGTCTC--G-G-TG- 2275
||||| | | || ||||||||| | | |||||||||| |||| | | ||
Sbjct 2069 GTTGTGGTTGTGGGGTTGGAATGGCTTGAATGGGGTTTGATGATT-GTCTAAAGAGATGG 2127
Query 2276 ---AGGCTACACTAAAAGCACGTCTTGTTCTTTCTATTGTAAGCTGTGTATAATGTTTCC 2332
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2128 GTGAGGCTACACGAAAAGCACGTCTTGTTCTTTCTATTGTAAGCTGTGTATAATGTTTCC 2187
Query 2333 AGATTCTTCTTTGAATTTCTCTGGAAAGAAAA 2364
|||||||| ||||| |||||||||||||||||
Sbjct 2188 AGATTCTTGTTTGAGTTTCTCTGGAAAGAAAA 2219
Score = 119 bits (64), Expect = 1e-25
Identities = 80/87 (92%), Gaps = 3/87 (3%)
Strand=Plus/Plus
Query 99 AGAGAGCTCTAGGGTTTCAAATTAACCAGAGGGAAACAACGAAGAAGAAGACCAATTCTC 158
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AGAGAGCTCTAGGGTTTCAGATTAACCAGAGGGAAACGACGAAGAAGAAGACCAATTCTC 60
Query 159 TCTCTTTCTCTTCCTCttttttttttt 185
||||||| |||| | |||| ||||||
Sbjct 61 TCTCTTTTTCTT--T-TTTTCTTTTTT 84
> Ahg478531 jgi|Araly1|478531|fgenesh2_kg.3__1232__AT3G11850.2
Length=2278
Score = 791 bits (428), Expect = 0.0
Identities = 1180/1524 (77%), Gaps = 128/1524 (8%)
Strand=Plus/Plus
Query 625 GGTTCTTTGCTTCGGTCTGTGAAG-AGA-AA-ATACGAGGAATTTGAGAATGAGAAACTG 681
||||| | | |||| ||||||||| ||| || | |||| ||||| ||| ||||||| |
Sbjct 526 GGTTCATGGATTCGATCTGTGAAGAAGAGAAGACACGATGAATTACAGACCGAGAAAC-G 584
Query 682 TTTCAC-ATACCGGAGCTGGA-G--CTGGACTTG-TCTTCCAATGCTAAAGTTCAAATTG 736
||| | |||||||||||||| | || ||| || || || ||| ||| ||| ||||| |
Sbjct 585 ATTCTCTATACCGGAGCTGGATGACCTAGACATGTTC-TCTAATCCTAGAGTCCAAATCG 643
Query 737 AGAATGAATTG-GAGCTGCTTA-GGGAGACTGTTAGCAGTCAACAGCAGTCGATTCAAGA 794
|||| ||| || || | | || | ||||||||||||| ||||||||| ||||||| ||
Sbjct 644 AGAACGAA-TGTGAATTAC-TACGCGAGACTGTTAGCAATCAACAGCAAACGATTCAGGA 701
Query 795 TTTGTATGAGGAGCTTGATGAAGAGCGGAATGCTGCTTCGACAGCTGCAAG-TGAGGCAA 853
||||||| | ||||| || |||||||| | |||| | || ||||||| || ||| |||
Sbjct 702 TTTGTATCATGAGCTCGAGGAAGAGCGTATTGCTTCATCAACAGCTG-TAGATGAAGCAC 760
Query 854 TGTCTATGATAT-TGAGGTTGCAGAGGGATAAAG-CTGA-ACTCCAAATGGAATTGAGAC 910
|| | |||| | || |||||||| ||| |||| |||| | | | |||||| ||| ||
Sbjct 761 TGAATCTGAT-TGGGAAGTTGCAGAAGGA-AAAGACTGATA-TGCTGATGGAACTGACAC 817
Query 911 AGTTTAAGCGGTT-TGCTGAGGAGAAAATGGAGC--ATGATCAAC-AAGAGCTTTTGG-A 965
|| || ||| ||| || | |||| | || || | |||| ||| |||| || || |
Sbjct 818 AGCTTCAGC-GTTGTGTTAAGGA-CAGATTGA-CTTATGA-AAACGCAGAGATTGAGGCA 873
Query 966 TCTGGAAGATTTGATATAT-AAGAGGGAGCAGACTATTCAGGCT-TTGACATTTGAAGCT 1023
| |||||| | || | ||| || ||||| ||||| ||||||||| || ||||||||| ||
Sbjct 874 T-TGGAAGCTGTGGTTTATCAA-AGGGATCAGACGATTCAGGCTCTT-ACATTTGAAACT 930
Query 1024 CAGGCTTATAAGCATAGAATGATGAGTTTTGGGTTCACTGAGGCTGAGGTTGAAACG-GA 1082
|||||||||||||| ||||||||||| |||||| | || ||||| || | || | | ||
Sbjct 931 CAGGCTTATAAGCACAGAATGATGAGCTTTGGGCTAACCGAGGCAGAAGCTG-ATGGTGA 989
Query 1083 GAAGAACATGCTTAGCCGTAATCCGAGCATGATCGAAAATGATTAC-CAATATGATCTCC 1141
|| || | ||||||| ||||| ||||||||| |||| | | ||| | |||||||| |||
Sbjct 990 GAGGAGCTTGCTTAGTCGTAACCCGAGCATGGTCGACATTAATT-CTGAATATGATTTCC 1048
Query 1142 CCACATCTGATTACCCTCCTATAAAGTGCAATGTGAATGAGAACCCAGGTCCCCTGGAGG 1201
| | | |||||||||||||| ||||||||||| | |||||||||| || ||| || ||||
Sbjct 1049 CTATACCTGATTACCCTCCTCTAAAGTGCAATATTAATGAGAACCAAGATCCTCTTGAGG 1108
Query 1202 CTGATAT-TGATGTTG-ATGATGTTGAAAAGTACCCATTGGCTGATTCACCTC----AC- 1254
||||||| | |||||| | |||| |||||| |||||| |||||||| |||| ||
Sbjct 1109 CTGATATCT-ATGTTGCA-GATGATGAAAACTACCCACCAGCTGATTCCCCTCATGGACG 1166
Query 1255 ---CCA-TTGAAGACTTTGGAACGAAGGA-TAAGTCAGATGGAGAGAAATCCTAGCTTTA 1309
|| || ||||||||||| |||| || | || |||||||||| | ||||||||||||
Sbjct 1167 AGAACATTTAAAGACTTTGGATCGAA-GACTCAGCCAGATGGAGACATATCCTAGCTTTA 1225
Query 1310 CTCAGCCTACTGGTGATGTATCTGGAGGGAGACAT-TATACAGAGAAGAAC-GTGGTTGG 1367
||||| | ||| | | |||||||| || | | |||||||| | |||||||
Sbjct 1226 CTCAG-----T--TGA---A--TAGAGGGAGAGATGT-TTCAGAGAAG-TCAATGGTTGG 1271
Query 1368 TCAGAGTCCTAGGCATCAGAGACATTTCAGGAGGGTTTCCACTGGTAGTGCAAGTTCACT 1427
|||||||||||||| ||| |||||||| |||||| ||||| || | || |||||||||
Sbjct 1272 TCAGAGTCCTAGGCGTCAAAGACATTTTAGGAGGATTTCCCCTACTGGTTCAAGTTCACA 1331
Query 1428 TTTGGGAACAACTAGAGAAAAAAGGCTTGAT--TTTTCTAATGATTCCCCAAGGTCCAAC 1485
|||||| || ||| |||| ||| | |||| |||| | ||||||||| |||| | |
Sbjct 1332 CTTGGGAGCATCTAAAGAACTAAGACGTGATGCTTTTGT--TGATTCCCCGAGGT-C--C 1386
Query 1486 AATGGTAGCTTCAGGAAAATGGAAGATCCCCCATATGCAGCTGGTAATTCCTTTGCAAGG 1545
|| |||| || ||||||||||||| | ||||| ||| | || | | ||
Sbjct 1387 ---GGAAGCTACAAGAAAATGGAAGATGTCTCATATACAG--AG-AA-T--AAT--AA-T 1434
Query 1546 GATAAGGGTGACTCATCGGAAATAGGAGATAATGACATGAATGATAGAGTTTATACCATT 1605
| ||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1435 GCTAAAGCCGACTCATCGGAAATAGGAG---ATGACATGAGTGATAGAGTTTATACCATT 1491
Query 1606 GACTCTGTCCAT--CA-CAGTGTATCTCATAGTGGTACTG---CTGAGCAAAAGTTTAAG 1659
|| ||||||||| || |||||| |||||||||||| || ||||||| ||| || ||
Sbjct 1492 GATTCTGTCCATCACAGCAGTGTGTCTCATAGTGGTGGTGTAACTGAGCAGAAGCTTGAG 1551
Query 1660 AATGACACTGCTGATGGTTATG-CAATGTCTCCGAGAGAAATATCGAATCAGCCGGATCT 1718
||| |||| ||||||| ||| | || ||||||| | | | | || |||||||
Sbjct 1552 GATGGCACTTCTGATGGCAATGTGGTTTTC-CCGAGAG--A-A-C--A-CA--CGGATCT 1601
Query 1719 TGGTGATCCTGAAATATCGAAACTTTACATGAGACTTCAAGCACTAGAGGCTGACAGGGA 1778
|||||||||||| ||| ||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 1602 TGGTGATCCTGATATAACGAAACTCTACATGAGGCTTCAAGCACTGGAGGCTGACAGGGA 1661
Query 1779 ATCAATGAGACAGGCGATTATGTCGATGAGGACTGAGAAA-GCACAGATGGTTCTGTTGA 1837
|||||||| ||| ||| || | || ||||||||||| ||| || || ||||| |||||||
Sbjct 1662 ATCAATGAAACATGCGCTTCTCTCTATGAGGACTGA-AAAGGCTCAAATGGTACTGTTGA 1720
Query 1838 AAGAAATTGCCCAACATCTGTCAAAGGATGTTGTCCCAGAACGTAGATTGCCTCTGCGGA 1897
|||||||||| |||||| |||||||||| |||||||| |||| ||||||||||| || |
Sbjct 1721 AAGAAATTGCTCAACATTTGTCAAAGGAAGTTGTCCCTCAACGGAGATTGCCTCTACGTA 1780
Query 1898 AAACATCTATTATTGGAG-CATTCAAC-TTCATATCTGTCTTTAAGTGGATCACATCTTT 1955
|| |||||||| ||| | |||| || |||| | |||||||||||||||||||||||
Sbjct 1781 AAGCATCTATTGCTGG-GCCATT-GACTTTCACGCCGGTCTTTAAGTGGATCACATCTTT 1838
Query 1956 TGTTTTCTGGAGAAGAAAGGCTCGTCGAAGCAAATACATGAACGGG--GTACAAGGGAAC 2013
||||| ||||| |||||||||||||||||||||||||||| || || || || |||
Sbjct 1839 TGTTTCCTGGAAAAGAAAGGCTCGTCGAAGCAAATACATGTTTGGAATGT-CA-GGAAAC 1896
Query 2014 AACATGGGATTGCAAATGCTTCTAGAAAAGACTCC-TCGAAT-ACGGCAATGGAGATGTC 2071
||||| || |||||||||||||||||||| | ||| ||| | ||| ||||| ||||||
Sbjct 1897 AACATCGGCTTGCAAATGCTTCTAGAAAA-AGTCCCTCGG-TCACGAAAATGGCGATGTC 1954
Query 2072 TCTCA--AGCACACAAGTGTGAAA 2093
| | | ||||| |||||||||||
Sbjct 1955 T-T-AGGAGCACGCAAGTGTGAAA 1976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92902107555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5