BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06570.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487467 jgi|Araly1|487467|fgenesh2_kg.6__601__AT5G06570.1 1572 0.0
> Ahg487467 jgi|Araly1|487467|fgenesh2_kg.6__601__AT5G06570.1
Length=1086
Score = 1572 bits (851), Expect = 0.0
Identities = 1018/1096 (93%), Gaps = 21/1096 (2%)
Strand=Plus/Plus
Query 1 ATCCAAAACCAAAAGGGAG-------AGACTAAGAATGGGGTCACTAGGAGAAGAACCAC 53
||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1 ATCCAAAACCAAAAGGGAGACTAATTAGAGGAAGAATGGGGTCACTAGGAGAAGAACCAC 60
Query 54 AAGTAGCAGAAGACTGCATGGGTTTGCTTCAACTCCTAAGCAACGGTACCGTTTTGAGAT 113
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 61 AAGTAACAGAAGACTGCATGGGTTTGCTTCAACTCCTAAGCAACGGCACCGTTTTAAGAT 120
Query 114 CCGAGAGCATTGACCTTATTACCCAACAAATCCCATTCAAAAACAACCAAACCGTTCTCT 173
||||| ||||||||||||| || ||||||||||||||||||| | |||||||||||||||
Sbjct 121 CCGAGGGCATTGACCTTATCACTCAACAAATCCCATTCAAAACCCACCAAACCGTTCTCT 180
Query 174 TCAAAGACTCAATCTATCACAAACCTAACAACCTTCACCTCCGTCTCTACAAACCCATTT 233
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 181 TCAAAGACTCAATCTATCACAAACCAAACAATCTTCACCTCCGTCTCTACAAACCCATTT 240
Query 234 CCGCCTCCAACCGTACCGCTCTCCCTGTCGTGGTCTTCTTCCACGGCGGGGGCTTCTGCT 293
| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 241 CTGCCTCCAACCGTACCGCTCTCCCTGTTGTGGTCTTCTTCCACGGCGGGGGATTCTGCT 300
Query 294 TCGGGTCACGTTCTTGGCCTCACTTTCACAACTTCTGTCTAACTCTTGCATCGTCCCTTA 353
|||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 301 TCGGCTCACGTTCTTGGCCTCACTTTCACAACTTCTGTGTAACTCTTGCATCTTCCCTTA 360
Query 354 ACGCCCTTGTCGTCTCACCTGACTACCGGTTAGCACCCGAACACCGCCTCCCGGCTGCCT 413
|||||||||| ||| |||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct 361 ACGCCCTTGTGGTCGCACCGGACTACCGGCTAGCACCCGAACACCGTCTCCCGGCTGCCT 420
Query 414 TTGAGGATGCTGAGG-CGGTGCTTACATGGCTCTGGGACCAAGCTGTTTCCGATGGTGTG 472
|||||||||| |||| || | || ||||||||| |||||||||||||||||| |||||||
Sbjct 421 TTGAGGATGCCGAGGCCGCT-CTCACATGGCTCCGGGACCAAGCTGTTTCCGGTGGTGTG 479
Query 473 AACCACTGGTTTGAAGATGGAACAGACGTTGACTTTGACAGGGTTTTTGTTGTTGGTGAT 532
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 480 GACCACTGGTTTGAAGGTGGAACAGACGTTGACTTTGACAGGGTTTTTGTTGTGGGTGAT 539
Query 533 TCATCCGGTGGGAACATAGCTCATCAACTCGCTGTCCGGTTCGGATCCGGTTCAATCGAG 592
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 TCTTCCGGTGGGAACATGGCTCATCAACTCGCTGTCCGGTTCGGATCCGGTTCAATTGAG 599
Query 593 TTGACACCGGTTCGGGTACGCGGTTACGTTCTTATGGGACCGTTTTTTGGCGGGGAAGAG 652
|||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 600 TTGACACCTGTTCGGGTTCGCGGTTACGTTCTCATGGGGCCGTTTTTTGGCGGGGAGGAG 659
Query 653 AGGACTAACTCCGAGAATGGCCCCTCTGAAGCTTTGCTCAGCTTGGATTTGCTTGACAAG 712
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 AGGACTAACTCCGAGAATGGCCCCTCTGAAGCTTTGCTCAACTTGGATTTGCTTGACAAG 719
Query 713 TTTTGGAGATTGTCACTACCAAACGGTGCAACAAGAGATCA-CCACATGGCTAACCCTTT 771
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 720 TTTTGGAGATTGTCACTACCAAAAGGTGCAACAAGAGATCATCC-CATGGCTAACCCTTT 778
Query 772 TGGACCAACGAGTCCTACACTCGAATCAATTAGCTTAGAGCCAATGTTGGTGATTGTCGG 831
|||||| |||||||| |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 779 TGGACCGACGAGTCCAACACTCGAATTAATTAGCATAGAGCCAATGTTGGTGATTGTCGG 838
Query 832 CGGCTCAGAACTCTTGAGAGATAGGGCCAAGGAATATGCATATAAATTAAAGAAGATGGG 891
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 839 CGGCTCAGAACTCTTGAGAGATAGGGCCAAAGAGTATGCATATAAATTAAAGAAGATGGG 898
Query 892 AGGAAAAAGGGTAGATTACATTGAATTCGAAAACAAGGAGCATGGTTTCTACTCCAACTA 951
|| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 899 AGAAAAAAAGGTAGATTACATTGAATTCGAAAACGAGGAGCATGGTTTCTACTCCAACAA 958
Query 952 TCCATCTTCCGAGGCTGCGGAACAAGTTCTCCGTA-TCATTGGAGACTTTATGAACAACT 1010
|||||||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||
Sbjct 959 TCCATCTTCCGAGGCTGCAGAACAAGTTCTTCGTACT-ATTGGAGACTTTATGAACAACT 1017
Query 1011 TGTCTTAAGTATTTTAGCATTTGGC-TTGTTGAAGGTAATTAAGTGTTTAATTCAATTAG 1069
||| |||| || ||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 1018 TGTTTTAA-TA-----GCATTTGGCCTT-TTGAAGGTAACTAAGTGTTTAATTCAATTAG 1070
Query 1070 GATTCCATCTCAATAA 1085
|||||||| | |||||
Sbjct 1071 GATTCCATGTTAATAA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5