BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06580.1
Length=1968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487468 jgi|Araly1|487468|fgenesh2_kg.6__602__AT5G06580.1 2784 0.0
Ahg939228 jgi|Araly1|939228|scaffold_503419.1 261 1e-68
> Ahg487468 jgi|Araly1|487468|fgenesh2_kg.6__602__AT5G06580.1
Length=1846
Score = 2784 bits (1507), Expect = 0.0
Identities = 1697/1787 (95%), Gaps = 19/1787 (1%)
Strand=Plus/Plus
Query 64 TCCATGGCTTTCGCTTCAAAATTCGCTCGTTCTAAAACTA-TTCTCTCTTTTCTCCGGCC 122
|||||||||||| |||| | ||||||||||||||| | | |||||||||||||||||||
Sbjct 1 TCCATGGCTTTCTCTTCGAGGTTCGCTCGTTCTAAAGC-AGTTCTCTCTTTTCTCCGGCC 59
Query 123 TTGTCGTCAGCTCCACTCGACGCCCAAGTCAACCGGTGACGTGACCGT-ACTTTCTCCGG 181
||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 60 TTGTCGTCAGCTCCACTCGACGCCCAAGTCAACCGCTGACGTGACCGTGA-TTTCTCCGG 118
Query 182 TGAAGGGACGCCGGAGACTTCCAACTTGCTGGTCGAGCTCTCTGT-TCCCATTGGCGATA 240
||||||| ||||||||||| || ||||| ||||| |||||||| | |||||||||| |||
Sbjct 119 TGAAGGGTCGCCGGAGACTCCCTACTTGGTGGTCCAGCTCTCT-TCTCCCATTGGCTATA 177
Query 241 GCTGCCTCCGCCACTTCTTTCGCTTACCTGAATCTGTCGAATCCTTCTATCAGTGAATCA 300
||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | | |
Sbjct 178 GCTGCCTCCGCCACTTCTTTCGCGTACCTGAATCTGTCGCATCCTTCTATCAGCG-A--A 234
Query 301 TCATCGGCTTTGGATTCAAGAGATATAACTGTTGGTGGAAAAGATAGCACTGAAGCTGTT 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 235 TCATCGGCTTTGGATTCAAGAGATATAACTGTTGGTGGGAAAGATAGCACTGAAGCTGTT 294
Query 361 GTTAAAGGAGAATACAAACAAGTCCCTAAGGAGCTTATTTCTCAATTGAAAACTATCCTC 420
|||||||| ||||||||| | |||||||| ||||||||| |||| |||||||| ||||||
Sbjct 295 GTTAAAGGGGAATACAAAGAGGTCCCTAAAGAGCTTATTACTCATTTGAAAACAATCCTC 354
Query 421 GAGGATAACTTGACAACTGACTACGATGAGAGGTACTTCCATGGGAAGCCCCAGAACAGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GAGGATAACTTGACAACTGACTACGATGAGAGGTACTTCCATGGGAAGCCCCAGAACAGT 414
Query 481 TTTCACAAGGCAGT-CAACATTCCTGATGTCGTTGTTTTCCCTAGGTCCGAAGAAGAAGT 539
|||||||||||||| | || |||||||||| ||||||||||||||||| ||| |||||||
Sbjct 415 TTTCACAAGGCAGTGC-ACGTTCCTGATGTTGTTGTTTTCCCTAGGTCTGAAAAAGAAGT 473
Query 540 CTCCAAGATTCTTAAATCCTGCAATGAATATAAGGTTCCTATTGTACCATATGGTGGGGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CTCCAAGATTCTTAAATCCTGCAATGAATATAAGGTTCCTATTGTACCATATGGTGGGGC 533
Query 600 AACATCGATCGAGGGTCATACCCTTGCTCCAAAAGGAGGTGTGTGCATTGACATGTCATT 659
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 534 AACATCGATTGAGGGTCATACCCTGGCTCCAAAAGGAGGTGTGTGCATTGACATGTCATT 593
Query 660 AATGAAGAGGGTGAAAGCATTACATGTGGAGGATATGGATGTTATTGTTGAGCCTGGAAT 719
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 594 AATGAAGAGGGTGAAAGCATTACATGTGGAGGATATGGATGTTGTTGTTGAGCCTGGAAT 653
Query 720 TGGTTGGCTGGAGCTTAATGAATATTTGGAAGAGTATGGTCTATTCTTTCCTCTTGATCC 779
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 654 TGGTTGGCTGGAGCTTAATGAATATTTGGAAGAATACGGTCTATTCTTTCCTCTTGATCC 713
Query 780 AGGACCTGGTGCCTCCATAGGAGGCATGTGTGCTACGCGTTGCTCTGGCTCTTTAGCTGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AGGACCTGGTGCCTCCATAGGAGGCATGTGTGCTACGCGTTGCTCTGGCTCTTTAGCTGT 773
Query 840 AAGGTATGGAACTATGCGTGACAATGTTATAAGCCTCAAGGTGGTTCTTCCTAATGGAGA 899
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 774 AAGGTATGGAACTATGCGGGACAATGTTATAAGCCTTAAGGTGGTTCTTCCTAATGGAGA 833
Query 900 TGTTGTGAAGACAGCTTCACGTGCCAGAAAGAGTGCTGCTGGATACGATTTGACTCGCTT 959
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 834 TGTTGTGAAGACAGCTTCACGTGCCAGAAAGAGTGCTGCAGGATACGATTTGACTCGCTT 893
Query 960 GATAATTGGGAGTGAGGGTACTTTAGGAGTCATTACTGAGATTACTCTCCGACTTCAGAA 1019
| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 894 GGTGATTGGGAGTGAGGGTACTTTAGGAGTCATTACTGAGATTACTCTCCGGCTTCAGAA 953
Query 1020 AATCCCACAGCATTCAGTGGTGGCAGTTTGCAATTTCCCTACAGTTAAGGATGCTGCAGA 1079
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 954 AATCCCACAGCATTCAGTGGTGGCAGTGTGCAATTTCCCTACAGTTAAGGATGCTGCAGA 1013
Query 1080 CGTGGCCATTGCCACTATGATGTCTGGAATACAGGTGTCAAGAGTGGAACTCCTTGACGA 1139
||| || |||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1014 CGTTGCAATTGCCACTATGATGTCTGGAATACAGGTGTCAAGAGTTGAGCTCCTTGATGA 1073
Query 1140 GGTTCAAATCAGAGCTATTAATATGGCAAACGGGAAAAATTTGACTGAAGCTCCAACTCT 1199
|||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1074 GGTTCAAATCAGGGCTATTAATATGGCAAACGGGAAAAACTTGACCGAAGCACCAACTCT 1133
Query 1200 GATGTTCGAGTTTATAGGAACAGAGGCATATACACGTGAGCAGACGCAAATTGTTCAGCA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GATGTTCGAGTTTATAGGAACAGAGGCATATACACGTGAGCAGACGCAAATTGTTCAGCA 1193
Query 1260 AATTGCTTCCAAACACAATGGATCAGACTTTATGTTCGCAGAAGAACCTGAAGCaaaaaa 1319
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1194 GATTGCTTCTAAACACAATGGATCAGACTTTATGTTCGCAGAGGAACCTGAAGCAAAAAA 1253
Query 1320 aGAACTCTGGAAGATAAGAAAAGAGGCGCTGTGGGCTTGCTATGCTATGGCGCCAGGTCA 1379
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AGAACTCTGGAAGATAAGAAAGGAGGCGCTGTGGGCTTGCTATGCTATGGCGCCAGGTCA 1313
Query 1380 TGAAGCAATGATTACAGATGTCTGTGTCCCTTTATCTCACCTTGCAGAACTCATATCAAG 1439
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1314 TGAAGCAATGATTACGGATGTCTGTGTCCCTTTGTCTCACCTTGCAGAACTAATATCAAG 1373
Query 1440 ATCCAAAAAAGAGCTTGATGCATCATCGTTGTTGTGTACCGTTATTGCTCATGCCGGAGA 1499
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 ATCCAAGAAAGAGCTTGATGCATCATCGTTGTTGTGTACCGTTATTGCTCATGCCGGAGA 1433
Query 1500 TGGAAACTTTCACACATGTATTATGTTTGATCCAAGCAGTGAAGAGCAGAGAAGAGAAGC 1559
||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 1434 TGGAAACTTTCACACATGTATTATGTTTGATCCGAGCAAAGAAGAGCAGCGAAGAGAAGC 1493
Query 1560 AGAAAGACTGAACCACTTTATGGTTCACAGTGCACTGTCCATGGATGGAACATGTACTGG 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1494 AGAAAGACTGAACCACTTTATGGTTCACAGTGCACTGTCCATGGATGGAACATGTACCGG 1553
Query 1620 AGAACACGGTGTTGGAACAGGAAAAATGAAGTATCTGGAGAAGGAACTGGGAATAGAAGC 1679
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 AGAGCACGGTGTTGGAACAGGAAAAATGAAGTATCTGGAGAAGGAACTGGGAATAGAAGC 1613
Query 1680 ACTGCAAACTATGAAGAGAATCAAGAAAACGTTGGACCCAAACGATATCATGAACCCGGG 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1614 ACTGCAAACTATGAAGAGAATCAAGAAAACGTTGGACCCAAACGATATCATGAACCCAGG 1673
Query 1740 AAAGTTAATTCCTCCTCATGTATGTTTCTAAAATTGC-TTGTGT-TTCTTCGTTTAACGT 1797
|||||| ||||||||||||||||||||||||||| || |||||| |||||| | |||| |
Sbjct 1674 AAAGTTGATTCCTCCTCATGTATGTTTCTAAAAT-GCCTTGTGTGTTCTTCATGTAAC-T 1731
Query 1798 TTCTGT-ATGTTGTGTGTGTAACACTGTTGTATCGTTTGGCCT-CAT 1842
|| ||| | ||| | |||||||||| |||||||| ||||| || |||
Sbjct 1732 TT-TGTTAAGTTTTCTGTGTAACACAGTTGTATC-TTTGGTCTACAT 1776
Score = 106 bits (57), Expect = 7e-22
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 1878 TACCTTTAAGTACAAAACAGCTGATGCAAGCAATTGCATCCGTTTACTTTTGAGGATGTG 1937
||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| | |||
Sbjct 1772 TACATTTAAGTACAAAAGAGCTGATGCAAGCAATTGCATCCGTTTACTTGTGAGCAAGTG 1831
Query 1938 GTAATATAAGGAAAG 1952
||||| |||||||||
Sbjct 1832 GTAATCTAAGGAAAG 1846
> Ahg939228 jgi|Araly1|939228|scaffold_503419.1
Length=932
Score = 261 bits (141), Expect = 1e-68
Identities = 159/168 (95%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 873 CCTCAAGGTGGTTCTTCCTAATGGAGATGTTGTGAAGACAGCTTCACGTGCCAGAAAGAG 932
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 77 CCTCGAGGTGGTTCTTCCTAATGCAGATGTTGTGAAGACAGCTTCACGTGCCAGAAAGAG 136
Query 933 TGCTGCTGGATACGATTTGACTCGCTTGATAATTGGGAGTGAGGGTACTTTAGGAGTCAT 992
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 137 TGCTGCAGGATACGATTTGACTCGCTTGATGATTGGGAGTGAGGGGACTTTAGGAGTCAT 196
Query 993 TACTGAGATTACTCTCCGACTTCAGAAAATCCCACAGCATTCAGTGGT 1040
||||||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 197 AACTGAGATTACTCTCCGGCTTCAGAAAATCGCACAGCATTCCGTGGT 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73971255790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5