BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06590.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487469 jgi|Araly1|487469|fgenesh2_kg.6__603__AT5G06590.1 1500 0.0
> Ahg487469 jgi|Araly1|487469|fgenesh2_kg.6__603__AT5G06590.1
Length=1013
Score = 1500 bits (812), Expect = 0.0
Identities = 955/1023 (93%), Gaps = 14/1023 (1%)
Strand=Plus/Plus
Query 50 AAAGACGAAAACTTTAGAAATGGAGGAAGAGCTCAAGAGCTTGAGCAAAAGCTTAGGAGG 109
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 AAAGACGAAAGCTTTAGAAATGGAGGAAGAGCTCAAGAGTTTGAGCAAAAGCTTAGGAGG 60
Query 110 ATTCTGCAATCATCTTCAAAGTAGCTGTGATGCTTTCAATCACTCTCTCCAGCGTCGCCC 169
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 ATTCTGCAATCATCTTCAAAGTAGCTGTGATGCTTTCGATCACTCTCTCCAGCGTCGCCC 120
Query 170 TATTCCTCTCGATTCGGCTTCATCGACGTTCATCAAGGGTCTCAATCGTCGAATCTCCAC 229
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 121 TATTCCTCTTGATTCGGCGTCATCCACGTTCATCAAGGGTCTCAATCGTCGAATCTCTAC 180
Query 230 CGCAGCTTCCGAGCTCAGTTTTCTGGAATCTATGTCTTTTGGTACAGTCTCCTTCGAAGA 289
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||
Sbjct 181 CGCAGCTTCCGAGCTCAATTTTCTGGAATCCATGTCTTTTGGTACAGTCTCCTTCGAGGA 240
Query 290 GCTTCTGGGTCACTGTAGTCAGATCTACAAGAATAATCAAAAAGATCTTTTGCATCTCCA 349
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 241 GCTTCTGGGTCACTGTAGTCAGATCTACAAGAATAATCAAGACGATCTTTTGCATCTCCA 300
Query 350 GGACCGCCTCACAGATTTCGGCTATGTTCCTGAAATTGAGATTGATGAAGGT--A-GAGA 406
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 301 GGACCGGCTCACAGATTTTGGCTATGTTCCTGAAATTGAGATTGATGAAGGTAGAGGAGA 360
Query 407 TGAAGAATCTGTCTTTGGAGCATTTGGTCATGAAGCTTCAAAGCATTCGGATGATGATTT 466
| ||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 361 TAAAGAATCTGGCTTTGGAGCATTTGGTCATGAGGATTCAAAGCATTCGAATGATGATTT 420
Query 467 GGAGT-CTCATTCATTGCAATGTTCAATCAAAAAAGGATTAGACGAGGACAATCTTCTAG 525
| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAATTCCT-ATTCATTGCAATGTTCAATCAAAAAAGGATTAGACGAGGACAATCTTCTAG 479
Query 526 ATAATTCACTAAATTTGAAGAACCTTGGCCTTTCAGATGCTTGTCTTGCTTATTTAGCTA 585
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 480 ATAATTCACTAAATTTGAAGAACCTTGGGCTATCAGATGCTTGTCTTGCATATTTAGCTA 539
Query 586 CAGGAGTTAATGATAATGTGAAGGATCCTGATACGTCTTTGAAAGAATCAGTGAAGGGTA 645
||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||| | |
Sbjct 540 CAGAAGTGAATGATAATGTAAAGGATCCTGACACGTCTTTGAAAGAATCAGTGAAGAGCA 599
Query 646 AATCATTTGACACAAGGGCTCTACCTGCCCCAAATGCGTCAGAGCTTTCCAATGAAGATG 705
|| ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 600 AACCATTTGACACAAGTGCTCTACCTGCTCCAAAGGCGTCAGAGCTTTCCAATGAAGATG 659
Query 706 AGTATGCAACACTAGAGATGGATAAAACTTCAGGGCCTACATTAACATTGATAAAAGAAG 765
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 AGTATGCAACACTAGAGATGGATAGAACTTCAGGGCCTACATTAACATTGATAAAAGAAG 719
Query 766 AATATGATAGTCTTCCCTCTTTCATGAAGTCTCTAGCATCGTGGGAGGATCTGCTAAGTG 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 AATATGATAGTCTTCCCTCTTTCATGAAGTCTCTAGCATCGTGGGAGGATCTGCTCAGTG 779
Query 826 CCGTGCAGAAATTCAACTCGGTCCTCGATAGCAAGAAAGAAATAAACGGGTCCTACTACT 885
|||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 780 CCGTAAAGAAATTCAACTCGGTCCTTGATAGCAAGAAAGAAATAAACGGATCTTACTACT 839
Query 886 TCCGTGCAGATGAGATTCCGACTCTAGGACTTGGCCACAAGGAGAAAGCGTATACGTTGC 945
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 840 TCCGAGCAGATGAGATTCCGACTCTAGGACTTGGCCATAAGGAGAAAGCGTATACGTTAC 899
Query 946 TCCTGACACGGATGAAGAGACTTGTGGTTGAGACAACGGACGGAGTTATATCTTATAGAG 1005
| ||||| |||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 900 TGCTGACGCGGATGAAGAGACTTGTGGTTGAGACAATGGATGGTGTTATATCTTATAGAG 959
Query 1006 TTGCATAGAGCTGAGAGTAATCCAATATACATTAATGTTGTATGAGATCTTTGTGTTTTG 1065
|||||||| | | | | |||||||||| ||||||| || |||||||||| ||||||
Sbjct 960 TTGCATAG---T-A-A-T---CCAATATACAGTAATGTTTTACGAGATCTTTGCGTTTTG 1010
Query 1066 GAA 1068
|||
Sbjct 1011 GAA 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5