BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06610.1
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940104 jgi|Araly1|940104|scaffold_600648.1 1805 0.0
> Ahg940104 jgi|Araly1|940104|scaffold_600648.1
Length=1147
Score = 1805 bits (977), Expect = 0.0
Identities = 1094/1151 (95%), Gaps = 6/1151 (1%)
Strand=Plus/Plus
Query 36 aaagaaagagagagagagagaatgcagagaTTAGCTCCATTGATggaagaaccaatagat 95
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AAA-AAAGAGAAAGAGAGAGAATGCAGAGATTAGCTCCATTGATGGAAGAACCAATGGAT 59
Query 96 gaagaagatcaagaagaagaaagaggaggaagaa-aaggatc-aacaagatccaaatcat 153
||||||||||||||||| |||||||||||| ||| || |||| || |||||||||||||
Sbjct 60 GAAGAAGATCAAGAAGACGAAAGAGGAGGAGGAAGAA-GATCGAA-GAGATCCAAATCAT 117
Query 154 ggaagaaaTGGATAAAGACACAATTGCAGTTCATCGTCTTCCCCAAGAAACCAGACATGA 213
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 118 GGAAGAAATGGATAAAGACACAATTGCAGTTCATCGTCTTCCCCAAAAAACCAGACATGA 177
Query 214 AGCTTCTTCTTAGTGTTATGGGATGTCCTCTCTTCCCTGTCCCTCCTCTCTCCAAAATCT 273
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGCTTCTTCTCAGTGTTATGGGATGTCCTCTCTTCCCTGTCCCTCCTCTCTCCAAAATCT 237
Query 274 CTCTTCAACAGGTATCATCATCAGCACAATACATAATACAACAGTTTGCCGCAGCAACCG 333
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 238 CTCTCCAACAGGTATCGTCATCAGCACAATACATAATACAACAGTTTGCAGCAGCAACCG 297
Query 334 GATGCAAGAAACTTGCGGGCGAAATCAAAAACACTTTCGTGACCGGAAAAATCACAATGA 393
||||||||||||| || |||||||| ||||||||||| ||||| |||||||| |||||||
Sbjct 298 GATGCAAGAAACTCGCAGGCGAAATAAAAAACACTTTTGTGACTGGAAAAATTACAATGA 357
Query 394 CTATGGTGAGTGATATTAATAGCTCAACCGCGGTCAGTAGTGCCTCGTCTGTGTCTCATA 453
||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 358 CTATGGTGAATGATCTTAATAGCTCAACTGCGGTTAGTAGTGCCTCGTCTGTGTCTCATA 417
Query 454 AGGGATGCTTTGTCATGTGGCAAATGCTACCTGAAAAATGGCTTATCGAGTTGGTTGGTG 513
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 418 AAGGATGCTTCGTCATGTGGCAAATGCTACCTGAAAAATGGCTCATCGAGTTGGTTGGTG 477
Query 514 GCGGCCATAAGGTTTCAGCCGGTAGTGATGGAGAAATTACTTGGCGTTATACACCATGGC 573
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 478 GTGGCCATAAGGTTTCAGCCGGAAGTGATGGAGAAATTACTTGGCGTTATACACCATGGC 537
Query 574 TCGGTGATCATGCAGCTAAAGGTGCCATAAGGCCTTTGCGACGTGCTCTACAAGGGTTGG 633
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 538 TCGGTGATCACGCAGCTAAAGGCGCCATACGGCCTTTGCGACGTGCTCTACAAGGGTTGG 597
Query 634 ATCCTCTAACCATTTCATCAGTTTTCTCATCGGCACAATTCGTTGGAGAGAAAGAAATCA 693
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 598 ATCCTCTAACAATATCATCAGTTTTTTCATCGGCACAATTCGTTGGAGAGAAAGAAATCA 657
Query 694 ATGGGAAGGATTGTTTCATTCTCAAGTTATCAACCGACCAAATCGATTTATCAAAACGCA 753
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 658 ATGGAAAGGATTGTTTCATTCTCAAGTTATCAACCGACCAAATTGATTTATCACGACGCA 717
Query 754 GTGACTCTACCGCTGAGATGATCAAACACGTCGCATTCGGTTACTTCAGCCAAAAAAGTG 813
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 718 GTGACTCTACGGCTGAGATGATCAAACACGTCGCATTTGGTTACTTCAGCCAGAAAAGTG 777
Query 814 GCCTCTTAATTTGCCTTGAAGACTCTTCCTTAACCAGGATTCAGATACCAGGAACTGTGC 873
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GCCTCTTAATATGCCTTGAAGACTCTTCCTTAACCAGGATTCAGATACCAGGAACTGTGC 837
Query 874 CAACATATTGGGAGACCTCAATGTCGTCGTGGATGGAAGACTACCGAGCAATAGAAGGTA 933
||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||
Sbjct 838 CAACATATTGGGAGACCTCAATGTCGTCGTGTATGGAAGATTATCGAGCAATCGAAGGTA 897
Query 934 GTGAAGTGGTAATAGCACACTCAGGTAAGACAGATGTGTTAATCTCAAGATTTGGAGAAA 993
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 898 GTGAAGTGGTAATAGCACACTCAGGTAAAACAGATGTGTTAATCTCAAGATTTGGAGAGA 957
Query 994 CTCTCAAAGGAGGAATCTCTGTGACTCGAATGGAAGAGAAATGGACTATAGACGATGTTG 1053
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CTCTCAAGGGAGGAATCTCTGTGACTCGAATGGAAGAGAAATGGACTATAGACGATGTTG 1017
Query 1054 CATTCGACGTGCCTGGTCTCTCCGTTGATTGTTTTATTCCTCCTAAAGAGATGAAGATGG 1113
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1018 CATTCGACGTGCCTGGCCTTTCCGTTGATTGTTTTATTCCACCTAAAGAGATGAAGATGG 1077
Query 1114 ATTTTCACCACCAAGATGCTCAAAAACATTTACCAAACTACAATACATGATCGAGGCAAA 1173
||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1078 ATTTTCATCACCAAGATGCTCAAAAACATTTACCAAACTACAATAGATGAT-GAGGCAAA 1136
Query 1174 ACTGTAAAATT 1184
|||||||||||
Sbjct 1137 ACTGTAAAATT 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5