BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06610.1 Length=1266 Score E Sequences producing significant alignments: (Bits) Value Ahg940104 jgi|Araly1|940104|scaffold_600648.1 1805 0.0 > Ahg940104 jgi|Araly1|940104|scaffold_600648.1 Length=1147 Score = 1805 bits (977), Expect = 0.0 Identities = 1094/1151 (95%), Gaps = 6/1151 (1%) Strand=Plus/Plus Query 36 aaagaaagagagagagagagaatgcagagaTTAGCTCCATTGATggaagaaccaatagat 95 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 AAA-AAAGAGAAAGAGAGAGAATGCAGAGATTAGCTCCATTGATGGAAGAACCAATGGAT 59 Query 96 gaagaagatcaagaagaagaaagaggaggaagaa-aaggatc-aacaagatccaaatcat 153 ||||||||||||||||| |||||||||||| ||| || |||| || ||||||||||||| Sbjct 60 GAAGAAGATCAAGAAGACGAAAGAGGAGGAGGAAGAA-GATCGAA-GAGATCCAAATCAT 117 Query 154 ggaagaaaTGGATAAAGACACAATTGCAGTTCATCGTCTTCCCCAAGAAACCAGACATGA 213 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 118 GGAAGAAATGGATAAAGACACAATTGCAGTTCATCGTCTTCCCCAAAAAACCAGACATGA 177 Query 214 AGCTTCTTCTTAGTGTTATGGGATGTCCTCTCTTCCCTGTCCCTCCTCTCTCCAAAATCT 273 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 AGCTTCTTCTCAGTGTTATGGGATGTCCTCTCTTCCCTGTCCCTCCTCTCTCCAAAATCT 237 Query 274 CTCTTCAACAGGTATCATCATCAGCACAATACATAATACAACAGTTTGCCGCAGCAACCG 333 |||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 238 CTCTCCAACAGGTATCGTCATCAGCACAATACATAATACAACAGTTTGCAGCAGCAACCG 297 Query 334 GATGCAAGAAACTTGCGGGCGAAATCAAAAACACTTTCGTGACCGGAAAAATCACAATGA 393 ||||||||||||| || |||||||| ||||||||||| ||||| |||||||| ||||||| Sbjct 298 GATGCAAGAAACTCGCAGGCGAAATAAAAAACACTTTTGTGACTGGAAAAATTACAATGA 357 Query 394 CTATGGTGAGTGATATTAATAGCTCAACCGCGGTCAGTAGTGCCTCGTCTGTGTCTCATA 453 ||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 358 CTATGGTGAATGATCTTAATAGCTCAACTGCGGTTAGTAGTGCCTCGTCTGTGTCTCATA 417 Query 454 AGGGATGCTTTGTCATGTGGCAAATGCTACCTGAAAAATGGCTTATCGAGTTGGTTGGTG 513 | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 418 AAGGATGCTTCGTCATGTGGCAAATGCTACCTGAAAAATGGCTCATCGAGTTGGTTGGTG 477 Query 514 GCGGCCATAAGGTTTCAGCCGGTAGTGATGGAGAAATTACTTGGCGTTATACACCATGGC 573 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 478 GTGGCCATAAGGTTTCAGCCGGAAGTGATGGAGAAATTACTTGGCGTTATACACCATGGC 537 Query 574 TCGGTGATCATGCAGCTAAAGGTGCCATAAGGCCTTTGCGACGTGCTCTACAAGGGTTGG 633 |||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 538 TCGGTGATCACGCAGCTAAAGGCGCCATACGGCCTTTGCGACGTGCTCTACAAGGGTTGG 597 Query 634 ATCCTCTAACCATTTCATCAGTTTTCTCATCGGCACAATTCGTTGGAGAGAAAGAAATCA 693 |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 598 ATCCTCTAACAATATCATCAGTTTTTTCATCGGCACAATTCGTTGGAGAGAAAGAAATCA 657 Query 694 ATGGGAAGGATTGTTTCATTCTCAAGTTATCAACCGACCAAATCGATTTATCAAAACGCA 753 |||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 658 ATGGAAAGGATTGTTTCATTCTCAAGTTATCAACCGACCAAATTGATTTATCACGACGCA 717 Query 754 GTGACTCTACCGCTGAGATGATCAAACACGTCGCATTCGGTTACTTCAGCCAAAAAAGTG 813 |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 718 GTGACTCTACGGCTGAGATGATCAAACACGTCGCATTTGGTTACTTCAGCCAGAAAAGTG 777 Query 814 GCCTCTTAATTTGCCTTGAAGACTCTTCCTTAACCAGGATTCAGATACCAGGAACTGTGC 873 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 GCCTCTTAATATGCCTTGAAGACTCTTCCTTAACCAGGATTCAGATACCAGGAACTGTGC 837 Query 874 CAACATATTGGGAGACCTCAATGTCGTCGTGGATGGAAGACTACCGAGCAATAGAAGGTA 933 ||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||| Sbjct 838 CAACATATTGGGAGACCTCAATGTCGTCGTGTATGGAAGATTATCGAGCAATCGAAGGTA 897 Query 934 GTGAAGTGGTAATAGCACACTCAGGTAAGACAGATGTGTTAATCTCAAGATTTGGAGAAA 993 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 898 GTGAAGTGGTAATAGCACACTCAGGTAAAACAGATGTGTTAATCTCAAGATTTGGAGAGA 957 Query 994 CTCTCAAAGGAGGAATCTCTGTGACTCGAATGGAAGAGAAATGGACTATAGACGATGTTG 1053 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 CTCTCAAGGGAGGAATCTCTGTGACTCGAATGGAAGAGAAATGGACTATAGACGATGTTG 1017 Query 1054 CATTCGACGTGCCTGGTCTCTCCGTTGATTGTTTTATTCCTCCTAAAGAGATGAAGATGG 1113 |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 1018 CATTCGACGTGCCTGGCCTTTCCGTTGATTGTTTTATTCCACCTAAAGAGATGAAGATGG 1077 Query 1114 ATTTTCACCACCAAGATGCTCAAAAACATTTACCAAACTACAATACATGATCGAGGCAAA 1173 ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1078 ATTTTCATCACCAAGATGCTCAAAAACATTTACCAAACTACAATAGATGAT-GAGGCAAA 1136 Query 1174 ACTGTAAAATT 1184 ||||||||||| Sbjct 1137 ACTGTAAAATT 1147 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47310539997 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5