BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06620.1
Length=998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487474 jgi|Araly1|487474|fgenesh2_kg.6__608__AT5G06620.1 1458 0.0
> Ahg487474 jgi|Araly1|487474|fgenesh2_kg.6__608__AT5G06620.1
Length=984
Score = 1458 bits (789), Expect = 0.0
Identities = 918/982 (93%), Gaps = 2/982 (0%)
Strand=Plus/Plus
Query 16 aaaaaaTGTCGCGATTGGCTTTAAATCGTTATAGCCGTTGTTTTTCGCGGCTTAAGACAT 75
||||||||||||| || ||||||||||||||||| |||| | | ||||| || ||| |||
Sbjct 2 AAAAAATGTCGCGTTTTGCTTTAAATCGTTATAGTCGTTATCTCTCGCGCCTCAAGCCAT 61
Query 76 TGACGACGCCTCTGTTTTTCTCTTCCTCTGCTGCGTCGAATCGAGATGGTGACTATCAGA 135
||| |||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 62 TGAAGACGCCTCCGTTTTTCTCTTCCTCTTCTGCGTCGAATCGAGATGGCGACTATCAGA 121
Query 136 TAGGACCGCCCCCGATCCGAGTCGGACTCACTGAGTCAGCGGGTCGGGCTGTTTTTGCAA 195
|||||||| ||||||| |||||||||||||||||| |||||||| |||||||| ||||
Sbjct 122 CCGGACCGCCACCGATCCAAGTCGGACTCACTGAGTCCGCGGGTCGAGCTGTTTTCGCAA 181
Query 196 CGCGTAAAATTGGTGCCGGAGATCTTATACACACGG-CAAAGCCCGTCGTAGCTTGCCCT 254
|||||| |||||||||||||||||| |||||||||| |||| ||||||||||| ||||||
Sbjct 182 CGCGTAGAATTGGTGCCGGAGATCTCATACACACGGCCAAA-CCCGTCGTAGCATGCCCT 240
Query 255 TCTCTTTTAAAGCTCGACTCTGTTTGCTATCTTTGCCTAAAGAAACTCATGGGTTCTGCT 314
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TCTCTTTTAAAGCTCGACTCTGTTTGCTATCTTTGCCTCAAGAAACTCATGGGTTCTGCT 300
Query 315 AAATTTGAAGATCGTGGAGTTTCTTATTGCAGTCAAGAGTGTCAAGAGAATTCAAAGGGG 374
|||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||
Sbjct 301 AAATTTGAAGATCGTGGAGTCTCGTATTGTAGTCAAGAGTGCCAAGAGAATTCAAAGGGT 360
Query 375 TTTTTGGATGTCGAAACAAGAGCAGATTGGTCAAGTTTTGATGATTATTGTAGGACGCAT 434
|||||||||||||||| ||||||||||||||||||||||| | |||||||| ||| |||
Sbjct 361 TTTTTGGATGTCGAAAGAAGAGCAGATTGGTCAAGTTTTGTTAATTATTGTGGGATGCAC 420
Query 435 AACTTCAAGTACCCGCTTATGGTCAAGAGGTTGTGTTGTATGATAATATCAGGTGCCCGG 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 421 AACTTCAAGTACCCGCTTATGGTCAAGAGGTTGTGTTGTATGATAATATCAGGTGTTCTG 480
Query 495 CCCGCTGACTGTCTTGACATACTTCAACCAGCTGTTTTATCTTCTGAGATGATTTCAAAG 554
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 481 CCCGCTGACTGTCTTGACATACTTCAACCAGCTGCTTTATCATCTGAGATGATTTCAAAG 540
Query 555 ATAGAAGACGGGTATGGTTTATTATGGAATGCCTTCAGGAAGGCAAATTTCAAGGATGAC 614
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATAGAAGACGGTTATGGTTTATTATGGAATGCCTTCAGGAAGGCAAATTTCAAGGATGAT 600
Query 615 GATGTTGCTTTTCTGACAAAACAATGGTATACGGCTATACTCGCTCGGATTCGTATCAAT 674
|||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GATGTTTCTTTTCTAACTAAACAATGGTATACGGCTATACTCGCCCGGATTCGTATCAAT 660
Query 675 GCATTTCGTATTGACCTGGTTGGAGGCTCATGTGGCGAAGACCTTCTTTCACTAGCTGCA 734
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 661 GCATTTCGTATTGATCTGGTTGGAGGCTCATGTGGCGAAGACCTTCTGTCACTGGCTGCA 720
Query 735 GCCTCTGTTGAAGGTGAAGGTGCAGTTGGTCATGCCGTTTATATGCTACCATCCTTCTAC 794
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 721 GCCTCTGTTGAAGGTGAAGGTGCAGTTGGCCATGCCGTTTATATGTTACCATCCTTCTAC 780
Query 795 AATCATGACTGTGATCCCAACGCGCACATAATTTGGTTGCATAATGCAGATGCAAGGTTG 854
|||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 781 AATCATGACTGTGATCCCAATGCGCACATTATATGGTTGCAGAATGCAGATGCAAGGTTG 840
Query 855 AACACTCTACGCGATGTCGAAGAAGGTGAAGAGCTTCGGATATGTTATATAGATGCAAGC 914
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 841 AACACTCTACGTGATGTCGAAGAAGGTGAAGAGCTTCGGATATGTTATATAGATGTAAGC 900
Query 915 ATGGGATATGAAGCGCGACAAACAATACTCTCTCAAGGGTTTGGGTTCCTCTGCAACTGT 974
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 901 ATGGGATATGAGGCGCGTCAAACAATACTCTCTCAAGGGTTTGGCTTCCTCTGCAACTGC 960
Query 975 TTACGCTGCCAGTCCACTGACT 996
||||||||||||||| ||||||
Sbjct 961 TTACGCTGCCAGTCCGCTGACT 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37093598241
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5