BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06650.1
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487475 jgi|Araly1|487475|fgenesh2_kg.6__609__AT5G06650.1 867 0.0
> Ahg487475 jgi|Araly1|487475|fgenesh2_kg.6__609__AT5G06650.1
Length=573
Score = 867 bits (469), Expect = 0.0
Identities = 541/576 (94%), Gaps = 3/576 (1%)
Strand=Plus/Plus
Query 1 ATGAAGACTTATGATTTCATGAACGTCAACTCTTTCTCTCCTAAGGAAAGACCCATTCGC 60
||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAAGACTCATGATTTCATGAGCGTCAACTCTTTCTCTCCAAAGGAAAGACCCATTCGC 60
Query 61 CTCTTTGGCTTCGAGTTTGGAGCTTCTCATGAAGAATCTGAGTCCAAAGACAATTACAAC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 CTCTTTGGCTTCGAGTTTGGAGCTTCTCATGAAGAATCTGAGTCCAAAGACAGTTACAAC 120
Query 121 GAGAACAATGAAAGCATCAAAGACGATAACAAAGAAAAAAGATTCAAGTGCCACTATTGT 180
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GAGAACAATGAAAGCATCAACGACAATAACAAAGAAAAAAGATTCAAGTGCCACTATTGT 180
Query 181 TTCCGGAACTTCCCTACTTCACAAGCCCTAGGCGGCCATCAAAACGCTCACAAGAGAGAA 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCTGAACTTCCCTACTTCACAAGCCCTAGGCGGCCATCAAAACGCTCACAAGAGAGAA 240
Query 241 CGTCAACAAACTAAACGCTTCAACCTCCATTCAAACGCAGCCGCTTTCTTCCACCGCCAA 300
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 AGTCAACAAACAAAACGCTTCAACCTCCATTCAAACACAGCCGCTTTCTTCCACCGCCAC 300
Query 301 CAAAACCACATTGCTGCTTCTAGGCTCTACGAGGATCGCTATAGCCTTGAAGCTGTTCAA 360
||||||||||||||| |||||||| ||||| ||||||||| ||||||||| |||| || |
Sbjct 301 CAAAACCACATTGCTACTTCTAGGTTCTACTAGGATCGCTTTAGCCTTGACGCTGCTCGA 360
Query 361 ATCAACGACGCGAGATTAGGGTTATGTCGTATGTATAACTCATCTGCGAGTTTTAATCGT 420
|| ||||| |||||||||||||||||| ||| |||||||||||| || |||||||||||
Sbjct 361 ATAAACGAAGCGAGATTAGGGTTATGTAGTAGGTATAACTCATCCGCAAGTTTTAATCGC 420
Query 421 GACCGTTCATCTTATTATAATAGATATATTCCTTGGTTCATCGGTGATCACCAGACTAGA 480
||||||||||||||| | | ||||||||| ||||||||||||||||||| ||||||||||
Sbjct 421 GACCGTTCATCTTAT-A-A-TAGATATATGCCTTGGTTCATCGGTGATCGCCAGACTAGA 477
Query 481 CCAACGTATGTCGGTGGTGGTAGCAGCAGCCATGGTCTGTTTTACGAGTCCAAGAAGAAT 540
|| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 478 CCGACGTATGTTGGTGGTGGTAGCAGCAGCCATGGTCTGTTATGCGAGTCCAAGAAGAAT 537
Query 541 GTACCGGACCACGTGAGTTTGGATCTACGCCTCTAG 576
||||||||||| ||||||||||||||||||||||||
Sbjct 538 GTACCGGACCAAGTGAGTTTGGATCTACGCCTCTAG 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21061885128
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5