BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06660.1
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940109 jgi|Araly1|940109|scaffold_600653.1 983 0.0
Ahg478555 jgi|Araly1|478555|fgenesh2_kg.3__1256__AT3G12030.1 671 0.0
> Ahg940109 jgi|Araly1|940109|scaffold_600653.1
Length=632
Score = 983 bits (532), Expect = 0.0
Identities = 574/595 (96%), Gaps = 0/595 (0%)
Strand=Plus/Plus
Query 52 CAATGGCCACCGCGATACCTCTCTTCGCCTCTTTCAAGTATGCCGATAGTCTCACCGTCG 111
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 20 CAATGGCCACCGCGATACCTCTCTTCGCTTCTTTCAAGTACGCCGATAGTCTCACCGTCG 79
Query 112 TTGGAATCTCTTTCTGCACGGCGTTGGTCTGCGAAGCAATCTCATGGATCCTAATCTATC 171
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 80 TCGGAATCTCCTTCTGCACGGCGTTGGTCTGCGAAGCAATCTCATGGATCCTAATCTACC 139
Query 172 GCACAAGCTCTTACAAATCGTTGAAATCTTCCATTGACAAAGCCTCTAAGAAGCTTGAGA 231
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 140 GCACGAGCTCTTACAAATCGTTGAAATCTTCCATTGACAAGGCCTCCAAGAAGCTGGAGA 199
Query 232 CGATGAAGACAGATAATCCTTCCTCGAAGCTAACAAACAAGAAATCGAAGACGAAGAAGA 291
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CGATGAAGACTGATAATCCTTCCTCGAAGCTAACAAACAAGAAATCGAAGACGAAGAAGA 259
Query 292 TAGATCGCGTTGAATCCAGCTTAAAGGAATCGAGCAGAGATCTATCACTCTTCAAGTTTA 351
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 260 TAGATCGCGTTGAATCCAGCTTAAAGGAATCGAGCAGAGATCTGTCGCTCTTCAAGTTTA 319
Query 352 AATCTGGTGCCGTTGTGGCTTTGGTTCTCTTTGTCGTGTTTGGATTGTTGAATTCGCTTT 411
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 320 AATCTGGTGCCGTTGTGGCTTTGGTTCTCTTTGTTGTGTTTGGGTTGTTGAATTCGCTTT 379
Query 412 TCGAAGGGAAAGTGGTAGCGAAGCTTCCGTTTCATCCGATTACGATTGTGAGGAAGATGA 471
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TCGAAGGGAAAGTTGTAGCGAAGCTTCCGTTTCATCCGATTACGATTGTGAGGAAGATGA 439
Query 472 GTCATAGAGGATTGAAAGGCGATGATTCCACTGATTGTTCCATGGCTTTTCTTTATCTGC 531
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GTCATAGAGGATTGAAAGGAGATGATTCCACTGATTGTTCCATGGCTTTTCTTTATCTGC 499
Query 532 TTTGTTCTATTAGTATAAGGACTAATCTGCAGAAGTTCTTGGGTTTCTCTCCACCTAGAG 591
|||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 500 TTTGTTCTATCAGTATTAGGACTAATCTGCAGAAGTTTTTGGGTTTCTCTCCACCTAGAG 559
Query 592 GAGCTGCTGGTGCTGGTGGTTTGTTCCCAATGCCTGATCCAAAGACCAATTGATC 646
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 560 GAGCTGCTGGTGCTGGTGGTTTGTTCCCAATGCCCGATCCAAAGACGAATTGATC 614
> Ahg478555 jgi|Araly1|478555|fgenesh2_kg.3__1256__AT3G12030.1
Length=648
Score = 671 bits (363), Expect = 0.0
Identities = 529/609 (87%), Gaps = 11/609 (2%)
Strand=Plus/Plus
Query 45 TGAGCAACAATGGCCACCGCGATACCTCTCTTCGCCTCTTTCAAGTATGCCGATAGTC-T 103
|||||||||||||| || ||||||| |||||||| |||||||| || |||||||| | |
Sbjct 3 TGAGCAACAATGGCGACTACGATACCGCTCTTCGCTTCTTTCAAATACGCCGATAG-CTT 61
Query 104 CACCGTCGTTGGAATCTCTTTCTGCACGGCGTTGGTCTGCGAAGCAATCTCATGGATCCT 163
|||||||| |||||||| ||||||| ||||||||||||||||| |||||||||||| |
Sbjct 62 AACCGTCGTCGGAATCTCCATCTGCACCGCGTTGGTCTGCGAAGCCATCTCATGGATCTT 121
Query 164 AATCTATCGCACAAGCTCTTACAAATCGTTGAAAT-CTTCCATTGACAAAGCCTCTAAGA 222
|||||| ||||| ||||| |||||||| ||||||| | ||||||||||||||| | ||||
Sbjct 122 AATCTACCGCACCAGCTCCTACAAATCCTTGAAATAC-TCCATTGACAAAGCCGCGAAGA 180
Query 223 AGCTTGAGACGATGAAGACAGATAATCCTTCCTCGAAGCTA-ACAAACAAGAAATCGAAG 281
| || ||||||||||||||||| ||||| || ||||||||| || | |||||||| |||
Sbjct 181 AACTCGAGACGATGAAGACAGAGAATCCATCGTCGAAGCTATCCATA-AAGAAATCAAAG 239
Query 282 ACGAAGAAGATAGATCGCGTTGAATCCAGCTTAAAGGAATCGAGCAGAGATCTATCACTC 341
|| |||||||| |||||||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 240 ACAAAGAAGATCGATCGCGTTGAAACCAGCTTAAAGGAATCGAGCCGAGATCTGTCACTC 299
Query 342 TTCAAGTTTAAATCTGGTGCCGTTGTGGCTTTGGTTCTCTTTGTCGTGTTTGGATTGTTG 401
|||||||| ||||| || |||||||||||| |||||||||| ||||| || |||||| |
Sbjct 300 TTCAAGTTCAAATCCGGCGCCGTTGTGGCTCTGGTTCTCTTCGTCGTCTTCGGATTGCTC 359
Query 402 AATTCGCTTTTCGAAGGGAAAGTGGTAGCGAAGCTTCCGTTTCATCCGATTACGATTGTG 461
||||| || |||||||| ||||| || |||||||||||||| |||||||| ||||| |||
Sbjct 360 AATTCACTCTTCGAAGGTAAAGTAGTCGCGAAGCTTCCGTTCCATCCGATAACGATAGTG 419
Query 462 AGGAAGATGAGTCATAGAGGATTGAAAGGCGATGATTCC-ACTGATTGTTCCATGGCTTT 520
| |||||||||||| || ||||||||||||||||| ||| || ||||| || ||||||||
Sbjct 420 AAGAAGATGAGTCACAGGGGATTGAAAGGCGATGA-TCCGACGGATTGCTCAATGGCTTT 478
Query 521 TCTTTATCTGCTTTGTTCTATTAGTATAAGGACTAATCTGCAG-AAGTTCTTGGGTTTCT 579
|||||||||||| ||||| |||||||| || || ||||| ||| || |||| |||||| |
Sbjct 479 TCTTTATCTGCTGTGTTCAATTAGTATCAGAACCAATCTACAGAAATTTCTAGGGTTT-T 537
Query 580 CTCCACCTAGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCAATGCCTGATCCAAAGACCA 639
||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 538 CTCCACCGCGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCCATGCCTGATCCTAAGACCA 597
Query 640 ATTGA-TCA 647
| ||| |||
Sbjct 598 ACTGAATCA 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36598000320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5