BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06670.1
Length=2961
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487477 jgi|Araly1|487477|fgenesh2_kg.6__611__AT5G06670.1 4169 0.0
Ahg478554 jgi|Araly1|478554|fgenesh2_kg.3__1255__AT3G12020.1 996 0.0
Ahg940133 jgi|Araly1|940133|scaffold_600677.1 132 2e-29
> Ahg487477 jgi|Araly1|487477|fgenesh2_kg.6__611__AT5G06670.1
Length=2970
Score = 4169 bits (2257), Expect = 0.0
Identities = 2771/3007 (92%), Gaps = 83/3007 (3%)
Strand=Plus/Plus
Query 1 ATGGGATCTAAACAAGTATCAAAGACTAGAAATGGTGGATTTAGCAAG-TTAAAGACTGT 59
||||||||||||||||| || ||| ||||||||| ||| |||| ||| |||| || ||
Sbjct 1 ATGGGATCTAAACAAGTGTCGAAGTCTAGAAATGCTGGGCTTAGTAAGTTTAAGGA-TGC 59
Query 60 TGAGTCCTCTGCATCTTCAACAACCTCGTCTTCAAAACTTTATCAAGAGGCGTCTGTAGA 119
||||||| ||| |||||||||||||||||||||||||||||||| |||| | ||||| ||
Sbjct 60 TGAGTCCCCTGTATCTTCAACAACCTCGTCTTCAAAACTTTATCCAGAGACATCTGTGGA 119
Query 120 TAGCCATAGCTCCCCTACTTCTTCATCGGTTCGAAGCAAGCCTCAGTTAC------C--- 170
|||||||||| ||||||| |||||||| | ||||||||||||||| |||| |
Sbjct 120 TAGCCATAGCCCCCCTACGTCTTCATCTGCTCGAAGCAAGCCTCATTTACAATATACAGG 179
Query 171 ------A---CCTAAGCCTTTGCAGTCCAAAGAAAATGTCACTGTCACTGTGCGTTTTCG 221
| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 180 AAAGGTACCCCCTAAGCCTTTGCAGTCCAAAGAAAATGTCACTGTCACAGTTCGTTTTCG 239
Query 222 TCCACTCAGTCCAAGGGAAATCCGGAAAGGAGAGGAGATTGCATGGTATGCAGATGGGGA 281
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 240 TCCACTCAGTCCGAGGGAAATCCGCAAAGGAGAGGAGATTGCATGGTATGCAGATGGAGA 299
Query 282 AACGATAGTGCGGAATGAGAATAATCAATCAATAGCTTATGCCTATGATCGTGTTTTCGG 341
||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 AACAATTGTGCGGAATGAGCATAATCAGTCAATAGCTTATGCCTATGATCGTGTTTTCGG 359
Query 342 GCCTACTACGACTACACGCAATGTCTATGATGTTGCTGCTCAGCATGTCGTTAATGGTGC 401
|||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GCCTACGACGACAACACGCCATGTCTATGATGTTGCTGCTCAGCATGTAGTTAATGGTGC 419
Query 402 TATGGCGGGGGTCAATGTGACTTTGAGTGTTAATTCAACCACAGGGACCATTTTCGCATA 461
||||||||||||| | || ||||||||||| |||||||||||||||||||||||||
Sbjct 420 TATGGCGGGGGTC-A----AC-GTGAGTGTTAATCCAACCACAGGGACCATTTTCGCATA 473
Query 462 TGGAGTGACAAGCAGTGGGAAAACTCATACAATGCATGGGAACCAAAGATCTCCTGGTAT 521
||||||||||||||||| |||||||| || ||||||||| |||||||||||||||||||
Sbjct 474 CGGAGTGACAAGCAGTGGAAAAACTCACACTATGCATGGGGACCAAAGATCTCCTGGTAT 533
Query 522 AATACCATTAGCCGTGAAAGATGCTTTCAGCATTATACAAGAGACACCAAGGCGAGAATT 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AATACCATTAGCCGTGAAAGATGCTTTCAGCATTATACAAGAGACACCAAGGCGAGAATT 593
Query 582 TCTCCTACGTGTTTCCTACTTTGAAATTTATAACGAGGTTGTCAATGATTTGTTGAATCC 641
||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 594 TCTCCTACGTGTTTCTTACTTTGAAATATATAATGAGGTTGTCAATGATTTATTGAACCC 653
Query 642 AGCAGGACAAAATTTGAGGATCAGAGAAGATGAGCAGGGAACCTATATTGAAGGGATTAA 701
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct 654 AGCAGGACAAAATTTGAGGACCAGAGAAGATGAGCAGGGAACCTTTATCGAAGGGATTAA 713
Query 702 AGAAGAGGTTGTTCTGTCCCCTGCTCATGTGCTTTCTCTCATAGCAGCTGGAGAAGAGCA 761
|||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 714 AGAAGAAGTTGTTCTATCCCCTGCTCATGCGCTTTCTCTTATAGCAGCTGGAGAAGAGCA 773
Query 762 CCGACATATTGGATCCACAAGTTTTAATTTGCTCAGCAGCCGAAGCCATACAATGTTTAC 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CCGACATATTGGATCCACAAGTTTTAATTTGCTCAGCAGCCGAAGCCATACAATGTTTAC 833
Query 822 CCTGACTATAGAGAGTAGTCCCTTGGGTGACAATAATGAAGGTGGAGCAGTACACCTCTC 881
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 834 CCTGACTATAGAGAGTAGTCCCTTGGGTGACAATAATGAAGGTGGAGCTGTACACCTCTC 893
Query 882 GCAGCTGAACCTCATTGACCTGGCAGGTTCTGAGAGCTCAAAAGCTGAAACCAGCGGTTT 941
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 894 GCAGCTGAACCTCATTGACCTGGCAGGTTCTGAGAGCTCAAAGGCTGAAACCAGTGGTTT 953
Query 942 AAGGCGCAAGGAAGGGTCTTATATAAATAAAAGTTTGCTAACTTTAGGGACCGTAATATC 1001
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 954 AAGACGCAAGGAAGGGTCTTATATAAATAAAAGTTTGCTGACTTTAGGGACTGTAATATC 1013
Query 1002 AAAGCTTACAGAT-AGAAGGGCTAGTCATGTACCATATAGGGACTCTAAATTAACCAGAC 1060
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1014 AAAGCTTACAGATAAGAA-GGCTAGTCATGTACCATATAGGGACTCTAAATTAACCAGGC 1072
Query 1061 TGCTTGAGTCCTCACTGAGTGGTCATGGACGTGTATCTCTCATATGTACAGTGACACCTG 1120
||||| |||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1073 TGCTTCAGTCCTCATTGAGTGGGCATGGACGTGTATCTCTTATATGTACAGTGACTCCTG 1132
Query 1121 CATCAAGCAACTCTGAAGAAACACACAACACATTGAAGTTTGCTCATCGTGCAAAGCATA 1180
||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1133 CATCAAGCAGCTCCGAAGAAACACACAACACATTGAAATTTGCCCATCGTGCAAAGCATA 1192
Query 1181 TTGAGATTCAAGCCGCACAGAACAAGATAATTGATGAGAAATCATTGATCAAGAAGTACC 1240
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1193 TTGAGATTCAAGCCGCACAGAACAAGATAATTGATGAGAAATCATTGATTAAGAAGTATC 1252
Query 1241 AATACGAGATTCGCCAACTCAAGGAGGAGCTGGAACAGCTTAAACAAGGAATTAAACCAG 1300
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1253 AATACGAGATTCGCCAACTCAAGGAGGAGTTGGAACAGCTTAAAGAAGGAATTAAACCAG 1312
Query 1301 TTTCTCAGCTAAAGGATATCAGTGGAGATGATATCGACATTGTTCTCCTGAAGCAGAAAC 1360
|||||||| |||||||||| |||| ||||| || | |||||||||||||||||||||
Sbjct 1313 TTTCTCAGTTAAAGGATATTAGTGAAGATG--AT-G---TTGTTCTCCTGAAGCAGAAAC 1366
Query 1361 TAGAAGAAGAGGAAGATGCTAAAGCAGCTCTCTTGAGTCGAATCCAAAGGCTGACAAAAC 1420
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 1367 TAGAAGAAGAGGAAGATGCTAAAGCAGCTCTCTTGAGTCGAATCCAACGGCTTACGAAAC 1426
Query 1421 TAATTCTCGTGTCTAATAAAACTCCACAAACATCGCGGTTTTCTTATCGTGCTGATCCTC 1480
||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1427 TAATTCTCGTGTCTACTAAAACTCCACAAACATCGCGGTTGTCTTATCGTGTTGATCCTT 1486
Query 1481 GGAGGAGACACTCA-TT-------CGGA---G--AA-G-A-GG--AGCTTGCTTACCTAC 1522
|||||||||||||| || ||| | || | | || |||||||||||||||
Sbjct 1487 GGAGGAGACACTCATTTGGAGAAGAGGAGTTGATAATGCATGGCCAGCTTGCTTACCTAC 1546
Query 1523 CGCATAAGAGGCGCGACTTGACAGATGATGAGAACCTTGAATTGTATGTTTCTCGTGAAG 1582
|| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1547 CGTATAAGAGGCGCGACTTGACGGATGATGAGAACCTTGAATTCTATGTTTCTCGTGAAG 1606
Query 1583 GGACTCCTGAGATTATAGATGATGCGTTTATAGAAGAAAAGAAGACAAGGAAGCATGGCC 1642
||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1607 GGACTCCTGAGATTACAGATGATGCGTTTAGAGAAGAAAAGAAGACAAGGAAGAATGGCC 1666
Query 1643 TACTGAACTGGTTGAAAATTAAGAAAAAAGACAGCAGTTTGGGGGGATCAAGCCTCAGTG 1702
||||||||||||||||| ||||||||||||| | ||||||||||||||| | | |
Sbjct 1667 TACTGAACTGGTTGAAACTTAAGAAAAAAGAAAACAGTTTGGGGGGATC-A-----A--G 1718
Query 1703 ACAAGTCGAGTGCAGTCAAGTCCAACAGTACACCGTCAACTCCTCAAGGAGAAGGCAGTG 1762
| | || |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 -C-A-TC-AGTG-A--CAAGTCCAACAGTACACCGTCAACTCCTCAAGGAGAAGGCAGTA 1771
Query 1763 ATTTTCATACAGAATCTAGACTTTCAGAAGGCTCCGCATTGGCAGATCAAAT-TATAGAG 1821
|||||| ||||| ||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 1772 ATTTTCGTACAGGATCTAGACTTTCAGAAGGCTCCGCATTGGCAGATCAACTCT-TAGAG 1830
Query 1822 ACTATGGAGAATAG-AGAAGCTCATGAAGACAGTTTTCATGAGATTGAGACACCTGAGAC 1880
|||| ||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1831 ACTAGGGATAAT-GAAGAAGCTCATGAAGATAGTTTTCATGAGATTGAGACACCTGAGAC 1889
Query 1881 TAGAATAAAAATGATCGACCAGATGGAAATACTGAGGGAACAGCAAAAGACTTTATCAGA 1940
||||||||||||||| | |||||||||| |||||||||||| ||||||| |||||| ||
Sbjct 1890 CAGAATAAAAATGATCAATCAGATGGAAACACTGAGGGAACAACAAAAGATTTTATCTGA 1949
Query 1941 GGAGATGGCACAACAATCAAGGTCTTTTAAACTGTTGTCAGAAGAGGCTGCCAAAGCCCC 2000
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1950 GGAGATGGTGCAACAATCAAGGTCTCTTAAACTGTTGTCAGAAGAGGCTGCCAAAGCCCC 2009
Query 2001 TCAAAATGAAGAAATTAAAGCAGAGATTATAAACCTCAATGGCGACATCAAGGCAAAGAA 2060
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 2010 TCAAAATGAAGAAATTAAAGTGGAGATTAAAAACCTCAATGGCGACATCAAGGCAAAGAA 2069
Query 2061 CGACCAGATTGCTACGTTGGGGAAACAAATACTGGATTTTGTTATAGCATCACATGATGA 2120
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 2070 CGACCAGATTGCTACGTTGGGGAAACAAATTTTGGATTTTGTTATAGCATCACAAGATGA 2129
Query 2121 ATTGGAT-AAATCTGATATCGTGCAGGCTGTTTCTGAAATGAGGGCTCAACTAAATGAGA 2179
||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2130 ATTGG-TAAAATCTGATATCGTACAGGCTGTTTCTGAAATGAGGGCTCAACTAAATGAGA 2188
Query 2180 AATGTTTTGAACTCGAGGTTAAAGCTGCAGATAATCGTATCATTCAGGAACAACTC-ACC 2238
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2189 AATCTTTTGAACTCGAGGTTAAAGCTGCAGATAATCGTATCATTCAGGAACAACTCAACC 2248
Query 2239 GAAAAGACAAGTTTCTGTGAAGATTTGCAAGAAGAGGTTGCAAACCTAAAGCAGCAGCTC 2298
|||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2249 -AAAAGACATGTTTATGTGAAGAGTTGCAAGAAGAGGTTGCAAACCTAAAGCAGCAGCTC 2307
Query 2299 TCTGACGCCCTGGAACTGGGAGATATCAACTCGGTCACATGTCACATGCAACAATCTTCT 2358
||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||
Sbjct 2308 TCTGACGCCCTGGAACTGGTAGATATCAGCTCGGTCACAAGTCACATGCAAAAATCTTCT 2367
Query 2359 CAATCGCCAAACAAAAATGAAGAAAAAGTCATAGAAGCACAGGCATTTGAGATTGAAGAG 2418
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2368 GAATCGCCAAACAAAAATAAAGAAAAAGTCATAGAGGCACAGGCATTTGAGATTGAAGAG 2427
Query 2419 CTTAAACTGAAAGCTGCAGAACTAAGTGAAC-TGAATGAACAACTAGAAATCCGAAACAA 2477
||||||||||||||| |||||||||||| || ||||||||||||||||| ||||||| ||
Sbjct 2428 CTTAAACTGAAAGCTACAGAACTAAGTG-ACTTGAATGAACAACTAGAACTCCGAAATAA 2486
Query 2478 GAAACTAGCTGAAGAGAGTTCATATGCGAAAGAGCTTGCTTCAGCGGCTGCTATTGAGCT 2537
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2487 GAAACTAGCTGACGAGAGTTCATATGCGAAAGAGCTTGCTTCAGCGGCTGCTACTGAGCT 2546
Query 2538 CAAGGCATTGTCTGAGGAAATAGCAAGACTTATGAATCACAACGAGAGACTAGCAGCTGA 2597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2547 CAAGGCATTGTCTGAGGAAATAGCAAGACTTATGAATCACAACGAGAGACTAGCAGCTGA 2606
Query 2598 TCTGGCAGCAGTGCAGAAGAGCTCTGTTACAACACCACAGGGAAAGACAGGAAACCTGAG 2657
|||| ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 2607 TCTGACAGCAGTGCAGAAGAGCTCTGTT---ACACCACGGGGCAAGACAGGAAACCTGAG 2663
Query 2658 GAATGGAAGAAGGGAGAGTGTTTCAAAGAGGAAAGAGCAAGAAAACTCGTTGATGGAACT 2717
|||| |||| || ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 2664 GAATAGAAGGAGAGAGAGTGTTACAAAGAGGAAAGAGCAAGACAACTCGTTGATGGAACT 2723
Query 2718 GAAGAGAGAACTGACTGTGAGCAAGGAACGTGAAGTTTCATTCGAAGCTGCTCTCATTGA 2777
|||||||||||||| | ||||||||||||||||||||||||| |||||| |||| ||||
Sbjct 2724 GAAGAGAGAACTGAGTATGAGCAAGGAACGTGAAGTTTCATTTGAAGCTACTCTGGTTGA 2783
Query 2778 AAAAATTCAGAGGGAAGCCGAGCTACAAAGAACAGTAGAAGAGTCGAAACAAAGGGAAGC 2837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2784 AAAAATTCAGAGGGAAGCCGAGCTACAAAGAACAGTAGAAGAGTCGAAACAAAGGGAAGC 2843
Query 2838 GTATCTAGAGAATGAACTTGCTAATATGTGGGGTCTTGTTGCCAAGTTGAGATCCCAAGG 2897
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 2844 GTATCTAGAGAATGAACTTGCTAATATGTGGGGTCTAGTTGCCAAGATGAGATCCCAAGG 2903
Query 2898 AGCTGCTAATTCAGGTTTGTCTGATTCAGTATCAGAGACA-AG-AA-TCGAGCATTTTGG 2954
|||||||||||||||||| ||||||||||||||||||||| | || || | |||||| |
Sbjct 2904 AGCTGCTAATTCAGGTTTATCTGATTCAGTATCAGAGACACAACAAATCTACCATTTTAG 2963
Query 2955 GACTTAA 2961
|||||||
Sbjct 2964 GACTTAA 2970
> Ahg478554 jgi|Araly1|478554|fgenesh2_kg.3__1255__AT3G12020.1
Length=3012
Score = 996 bits (539), Expect = 0.0
Identities = 803/930 (86%), Gaps = 20/930 (2%)
Strand=Plus/Plus
Query 445 GGGACCATTTTCGCATATGGAGTGACAAGCAGTGGGAAA-ACTCATACAATGCATGG-GA 502
||||| ||||| ||||||||||||||||||||| ||||| || || ||||||||||| |
Sbjct 427 GGGACGATTTTTGCATATGGAGTGACAAGCAGT-GGAAAGACACACACAATGCATGGTG- 484
Query 503 ACCAAAGATCTCCTGGTATAATACCATTAGCCGTGAAAGATGCTTTCAGCATTATACAAG 562
|||| |||||||||||||| |||||| |||| |||||||||||||||||||| | ||||
Sbjct 485 ACCAGAGATCTCCTGGTATTATACCACTAGCAGTGAAAGATGCTTTCAGCATCACCCAAG 544
Query 563 AGACACC-AAGGCGAGAATTTCTCCTACGTGTTTCCTACTTTGAAATTTATAACGAGGTT 621
|||| || || ||||||||||| || ||| |||||||| | ||||| ||||| ||||||
Sbjct 545 AGACTCCTAA-TCGAGAATTTCTTCTGCGTATTTCCTACATGGAAATATATAATGAGGTT 603
Query 622 GTCAATGATTTGTTGAATCCAGCAGGACAAAATTTGAGGATCAGAGAAGATGAGCAGGGA 681
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 604 GTCAATGATTTGTTGAATCCAGCAGGACAAAATTTGAGGATCAGAGAAGACAAGCAGGGA 663
Query 682 ACCTATATTGAAGGGATTAAAGAAGAGGTTGTTCTGTCCCCTGCTCATGTGCTTTCTCTC 741
|||| | | ||||||||||||||||| |||||| | ||||||||||||| |||||||||
Sbjct 664 ACCTTTGTCGAAGGGATTAAAGAAGAAGTTGTTTTATCCCCTGCTCATGCGCTTTCTCTT 723
Query 742 ATAGCAGCTGGAGAAGAGCACCGACATATTGGATCCACAAGTTTTAATTTGCTCAGCAGC 801
|| ||||||||||||||||| |||||| ||||||| |||| |||||||||||||||||||
Sbjct 724 ATCGCAGCTGGAGAAGAGCAACGACATGTTGGATCTACAAATTTTAATTTGCTCAGCAGC 783
Query 802 CGAAGCCATACAATGTTTACCCTGACTATAGAGAGTAGTCCCTTGGGTGACAATAATGAA 861
|| ||||||||||| ||||| |||| ||||| ||||||||||| || ||||| | | ||
Sbjct 784 CGGAGCCATACAATATTTACGTTGACGATAGAAAGTAGTCCCTTAGGCGACAAGAGTAAA 843
Query 862 GGTGGAGCAGTACACCTCTCGCAGCTGAACCTCATTGACCTGGCAGGTTCTGAGAGCTCA 921
|||| ||| ||||||||||| || ||||||||| |||| ||||||||||| ||||| |||
Sbjct 844 GGTGAAGCTGTACACCTCTCACAACTGAACCTCGTTGATCTGGCAGGTTCCGAGAGTTCA 903
Query 922 AAAGCTGAAACCAGCGGTTTAAGGCGCAAGGAAGGGTCTTATATAAATAAAAGTTTGCTA 981
|| | |||||| || ||| |||| ||||| ||||| || ||||||||||||||||||||
Sbjct 904 AAGGTTGAAACTAGTGGTGTAAGACGCAAAGAAGGATCATATATAAATAAAAGTTTGCTG 963
Query 982 ACTTTAGGGACCGTAATATCAAAGCTTACAGATA-GAAGGGCTAGTCATGTACCATATAG 1040
|| |||||||| || |||||||||||||| ||| || ||||| ||||||||||| ||
Sbjct 964 ACGTTAGGGACTGTGATATCAAAGCTTACGGATGTGA-GGGCTTCACATGTACCATACAG 1022
Query 1041 GGACTCTAAATTAACCAG-ACTGCTTGAGTCCTCACTGAGTGGTCATGGAC-GTGTATCT 1098
|||||||| ||||| || | | ||| | |||||| |||||||||||| || | ||||||
Sbjct 1023 AGACTCTAAGTTAACAAGGA-TCCTTCAATCCTCATTGAGTGGTCATG-ACCGAGTATCT 1080
Query 1099 CTCATATGTACAGTGACACCTGCATCAAGCAACTCTGAAGAAACACACAACACATTGAAG 1158
||||| |||||||| || ||||||||||||| || |||||||||||||||||||||||
Sbjct 1081 CTCATTTGTACAGTCACTCCTGCATCAAGCAGTTCAGAAGAAACACACAACACATTGAAA 1140
Query 1159 TTTGCTCATCGTGCAAAGCATATTGAGATTCAAGCCGCACAGAACAAGATAATTGATGAG 1218
||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 1141 TTTGCTCATCGTGCAAAGCATATTGAGATTCAAGCTGAACAAAACAAGATAATTGATGAG 1200
Query 1219 AAATCATTGATCAAGAAGTACCAATACGAGATTCGCCAACTCAAGGAGGAGCTGGAACAG 1278
|||||||| ||||||||||||||| | |||||||| ||||| ||||| ||| |||||||
Sbjct 1201 AAATCATTAATCAAGAAGTACCAACATGAGATTCGTCAACTGAAGGAAGAGTTGGAACAC 1260
Query 1279 CTTAAACAAGGAA-TTAAACCAGTTTCTCAGCTAAAGGATATCAGTGGAGATGATATCGA 1337
|||||||| |||| || ||||||| ||||||| |||||||| ||| |||||||||
Sbjct 1261 CTTAAACA-GGAAATTGTACCAGTTCCTCAGCTGAAGGATATTGGTGCAGATGATAT--- 1316
Query 1338 CATTGTTCTCCTGAAGCAGAAACTAGAAGA 1367
| ||||||||||||||||| ||||||||
Sbjct 1317 --T-GTTCTCCTGAAGCAGAAGCTAGAAGA 1343
Score = 584 bits (316), Expect = 1e-165
Identities = 682/855 (80%), Gaps = 39/855 (5%)
Strand=Plus/Plus
Query 1359 ACTAGAAGAAGAGGAAGATGCTAAAGCAGCTCTCTTGAGTCGAATCCAAAGGCTGACAAA 1418
||| ||||| |||||||| |||||||||||||||||||||||||||||| | |||| ||
Sbjct 1368 ACTCGAAGAGGAGGAAGAAGCTAAAGCAGCTCTCTTGAGTCGAATCCAACGATTGACGAA 1427
Query 1419 ACTAATTCTCGTGTCTAATAAAACTCCACAAACATCGCGGTTTTCTTATCGTGCTGATCC 1478
| ||||| | ||||| | ||||| ||| ||| |||| || || || ||||| | ||||
Sbjct 1428 ATTAATTTTGGTGTCGACTAAAAATCCCCAAGCATCTCGATTACCTCATCGTTTTAATCC 1487
Query 1479 TCGGAGGAGACACTCATTCGGAGAAGAGGAGCTTGCTTACCTACCGCATAAGAGGCGCGA 1538
|||||||||||| ||||| || ||||| ||||||||||||||||| | |||||||| ||
Sbjct 1488 TCGGAGGAGACATTCATTTGGGGAAGAAGAGCTTGCTTACCTACCATACAAGAGGCGGGA 1547
Query 1539 CTTGACAGATGATGAG-AACCTTGAATTGTATGTTTCTCGTGAAGGGAC-TCCTGAGATT 1596
| ||| || |||||| ||| |||| ||||||||||| ||| ||||| || |||||||
Sbjct 1548 CATGATGGACGATGAGCAAC-TTGACCTGTATGTTTCT-GTGGAGGGAAATCATGAGATT 1605
Query 1597 ATAGATGATGCGTTTATAGAAGAAAAGAAGACAAGGAAGCATGGCCTACTGAACTGGTTG 1656
| |||| |||||| || ||||||||| ||||| ||||||| || | | || |||||
Sbjct 1606 AGAGATAATGCGTATAGAGAAGAAAAAAAGACCCGGAAGCACGGATTGTTAAATTGGTT- 1664
Query 1657 AAAAT-TAAGAAAAAAGA-CAGCAGTTTGGGGGGATCAAGCCTCAGTGACAAGTCGAGTG 1714
||| |||||||| ||| || ||||| | | ||| || ||| |||| ||||
Sbjct 1665 AAAGCCTAAGAAAAGAGATCA-CAGTTCAAG----T---GCC--AGCGACCAGTCAAGTG 1714
Query 1715 CAGTCAAGTCCAACAGTACACCGTCAACTCCTCAAGGAGAAGGCAGTGATTTTCATACAG 1774
||||| || ||||| ||||| |||||||||||||| | ||||||| || | || ||||
Sbjct 1715 TGGTCAAATCTAACAGCACACCATCAACTCCTCAAGGGGGAGGCAGTCATCTGCACACAG 1774
Query 1775 AATCTAGACTTTCAGAAGGCTCCGCATTGGCA-G-ATCAAAT-TATAGAGACTATGGA-G 1830
|||| ||||||||||||||||| || || | | | | ||| | | |||| ||| ||| |
Sbjct 1775 AATCAAGACTTTCAGAAGGCTC-GCCTTTG-ATGGAACAACTCTC-AGAGCCTAGGGAAG 1831
Query 1831 AATAGAGAAGCTC-ATGAAGACAGTTTTCATGAGATTGAGACACCTGAGACTAG-AATAA 1888
| ||||||||| | |||||||||| ||||| || |||| || |||||||| |||||
Sbjct 1832 AC-AGAGAAGCTTTA-GAAGACAGTTCCCATGAAATGGAGATTCCGGAGACTAGCAATAA 1889
Query 1889 AAATGATCGACCAGATGGAAATACT-GAGGGAACAGCAAAAGACTTTATCAGAGGAGATG 1947
|| ||| ||| || |||| | || |||||||||| |||||| |||||| || ||| |
Sbjct 1890 AA-TGAGCGATGAGTTGGATCT-CTTGAGGGAACAGAAAAAGATTTTATCTGAAGAGGCG 1947
Query 1948 GCACAACAATCAAGGTCTTTTAAACTGTTGTCAGAAGAGGCTGCCAAAG-CCCCTCAAAA 2006
|||| |||| ||| ||||| |||| ||||||||| || ||| | |||| ||||||||||
Sbjct 1948 GCACTGCAATTAAGTTCTTTAAAACGGTTGTCAGATGAAGCTAC-AAAGTCCCCTCAAAA 2006
Query 2007 TGAAGAAATTAAAGCAGAGATTATAA--ACCTCAATGGCGACATCAAGGCAAAGAACGAC 2064
||| || ||||||| || |||| || || |||||| ||||||||| |||||||| |||
Sbjct 2007 TGAGGAGATTAAAGGGGAAATTA-AAGTAC-TCAATGACGACATCAAAGCAAAGAATGAC 2064
Query 2065 CAGATTGCTACGTTGGGGAAACAAATACTGGATTTTGTTAT-AGCATCACATGATGAATT 2123
|||||||||||||||| |||||||||| ||||||||||||| | |||| ||||| | |||
Sbjct 2065 CAGATTGCTACGTTGGAGAAACAAATATTGGATTTTGTTATGA-CATCTCATGAGGCATT 2123
Query 2124 GGATAAATCTGATATCGTGCAGGCTGTTTCTGAAATGAGGGCTCAACTAAATGAGAAATG 2183
|||||||||||||||| ||||||| ||| |||| |||||| |||||| ||||||||||
Sbjct 2124 GGATAAATCTGATATCATGCAGGCAGTTGCTGAGCTGAGGGATCAACTTAATGAGAAATC 2183
Query 2184 TTTTGAACTCGAGGT 2198
|||||||||||||||
Sbjct 2184 TTTTGAACTCGAGGT 2198
> Ahg940133 jgi|Araly1|940133|scaffold_600677.1
Length=248
Score = 132 bits (71), Expect = 2e-29
Identities = 86/93 (92%), Gaps = 2/93 (2%)
Strand=Plus/Plus
Query 328 GATCGTGTTTTCGGGCCTACTACGACTACACGCAATGTCTATGATGTTGCTGCTCAGCAT 387
||||||||||||| |||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 79 GATCGTGTTTTCGTGCCTACGACGACTATACACAATGTCTATGATGTTGCTGCTCAGCAT 138
Query 388 GTCGTTAATGGTGCTATGGCG-GGGG-TCAATG 418
||||||||||||||||||| | |||| ||||||
Sbjct 139 GTCGTTAATGGTGCTATGGTGCGGGGATCAATG 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111794869075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5