BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06680.1 Length=3089 Score E Sequences producing significant alignments: (Bits) Value Ahg487478 jgi|Araly1|487478|fgenesh2_kg.6__612__AT5G06680.1 4822 0.0 > Ahg487478 jgi|Araly1|487478|fgenesh2_kg.6__612__AT5G06680.1 Length=3020 Score = 4822 bits (2611), Expect = 0.0 Identities = 2879/3006 (96%), Gaps = 28/3006 (1%) Strand=Plus/Plus Query 101 aaaaaaaggtgaaatcgaa--gaagaaga-aaaaaaaggcaaaagCTTGA-ATTGATTAT 156 |||||||| |||||||||| |||||||| |||||||||||||||||| | |||| || Sbjct 24 AAAAAAAGTTGAAATCGAATCGAAGAAGATAAAAAAAGGCAAAAGCTT-ACATTG---AT 79 Query 157 GGAAGACGACGATCAGCAGAAGGCTGCAGATCTAGTACAAGAGCTTGTTCTTCGTCTCGT 216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 80 GGAAGACGACGATCAGCAGAAGGCTGCAGATCTAGTACAAGAGCTTGTTCTTCGTCTCGT 139 Query 217 CTCACAAAACCCTCAAACCCCTAATCTCGATCCCAATTCTCCCGCCTTCCTCAAAACCCT 276 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140 CTCCCAAAACCCTCAAACCCCTAATCTCGATCCCAATTCTCCCGCCTTCCTCAAAACCCT 199 Query 277 TCGTTACGCTTTTCGTATCCTCTCTAGTCGTCTTACTCCTTCCGTCCTCCCTGACGCCAC 336 ||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||| Sbjct 200 TCGTTACGCCTTTCGTATCCTCTCTAGCCGCCTTACTCCCTCCGTCCTCCCTGACGCCAC 259 Query 337 CGCTATCGCTGAGTCTCTCAAACGCCGTCTCGCTACTCAGGGTAAGTCCTCCGACGCACT 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 CGCTATCGCTGAGTCTCTCAAACGCCGTCTCGCTACTCAGGGTAAGTCCTCCGACGCACT 319 Query 397 CGCTTTTGCCGATCTCTACACTAAGTTCGCTTCCAAAACTGGACCTGGCAGTGTCAATAA 456 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 320 CGCTTTTGCCGATCTCTACACTAAGTTCGCTTCCAAGACTGGACCAGGCAGTGTCAATAA 379 Query 457 CAAATGGGCTCTTGTTTATTTGCTTAAAATTGTTTCTGACGATCGTAAATCGGCTATAAA 516 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 380 TAAATGGGCTCTTGTTTATTTGCTTAAAATCGTTTCTGATGATCGTAAATCGGCTATAAA 439 Query 517 TGGTCTTGATTCCTCGGTTTTGTTACCTAATTTGGGGATTGGTGATACTGGTAATGGGGT 576 |||||||||||| |||||||||||||||||||||||| |||||||| |||||||| | || Sbjct 440 TGGTCTTGATTCGTCGGTTTTGTTACCTAATTTGGGGCTTGGTGATGCTGGTAAT-GTGT 498 Query 577 TTT-GAGCCGTGGAGAGGCTAAGAAGAAGGATTGGAGTAATGGGGTTTTGTTGGTTAGTA 635 ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 499 TTTCGCGCCGTGGGGAGGCTAAGAAGAAGGATTGGAGTAATGGGGTTTTGTTGGTTAGTA 558 Query 636 AAGATCCTGAGAATTTGAGGGATATTGCGTTTAGAGAGTATGCCATTTTGGTTAAGGAAG 695 ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| Sbjct 559 AAGATCCTGAGAATTTGCGAGATATTGCGTTTAGAGAGTATGCGGTTTTGGTTAAGGAAG 618 Query 696 AGAATGAAGTGACGGAGGAGGTTCTAGTGAGGGATGTTTTGTATGCTAGCCAAGGAATTG 755 ||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |||| Sbjct 619 AGAATGAAGTGACTGAGGAGGTTCTAGTTAGGGATGTTTTGTATGCTTCCCAAGGTATTG 678 Query 756 ATGGGAAATATGTCAAATTTAACAGTGAAATCGACGGTTATGCCGTGCAGGAGTCTGTTA 815 ||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct 679 ATGGGAAATATGTGAAATTTAACAGCGAAATTGACGGTTATGCGGTGCAGGAGTCTGTTA 738 Query 816 AGGTGCCTCGAGCTACGAGGATTATGGTTCGTATGCTCTCTGAGCTTGGTTGGTTGTTTA 875 |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| Sbjct 739 AGGTGCCTCGAGCTACTAGGATTATGGTACGTATGCTCTCTGAGCTTGGCTGGTTGTTTA 798 Query 876 GAAAGGTTAAGACTTTTATAACTGAGAGTATGGATCGGTTTCCAGCTGAGGATGTGGGAA 935 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 799 GAAAGGTTAAGACTTTTATAACCGAGAGTATGGATCGGTTTCCAGCTGAGGAAGTGGGAA 858 Query 936 CTGTTGGGCAAGCGTTTTGTGCGGCGTTGCAAGATGAGCTTTCTGATTATTATAAGTTGT 995 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | Sbjct 859 CTGTTGGGCAAGCGTTTTGTGCGGCATTGCAAGATGAGCTCTCTGATTATTATAAGTTAT 918 Query 996 TAGCTGTGCTAGAAGCGCAGGCCATGAATCCTATTCCTTTGGTTTCTGAATCAGCAAGCT 1055 | |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 919 TGGCTGTGCTTGAAGCACAGGCCATGAATCCTATTCCTTTGGTTTCTGAATCAGCTAGCT 978 Query 1056 CAAACAATTACCTTTCTTTGAGGAGGTTGTCGGTATGGTTTGCGGAGCCTATGGTGAAAA 1115 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 979 CAAGTAATTACCTTTCTTTGAGGAGGTTGTCGGTATGGTTTGCGGAGCCTATGGTGAAAA 1038 Query 1116 TGAGACTGATGGCTGTTTTGGTTGACAAGTGTAAGGTTTTGAGAGGTGGGGCGATGGCTG 1175 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1039 TGAGACTGATGGCTGTTTTGGTTGACAAGTGTAAGGTACTGAGAGGTGGGGCGATGGCTG 1098 Query 1176 GGGCTATCCATTTGCACGCACAGCATGGTGATCCGCTTGTTCATGATTTTATGATGAGTT 1235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1099 GGGCTATCCATTTGCACGCACAGCATGGTGATCCGCTTGTTCATGATTTTATGATGAATC 1158 Query 1236 TGCTTCGATGTGTGTGTTCTCCGCTATTTGAAATGGTGAGAAGTTGGGTTCTAGAAGGGG 1295 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1159 TGCTCCGATGTGTGTGTTCTCCGCTGTTTGAAATGGTGAGAAGTTGGGTTCTAGAAGGAG 1218 Query 1296 AGTTGGAAGATACTTTTGGTGAATTCTTTGTCGTAGGTCAGCCGGTTAAAGTCGATTTGC 1355 ||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| Sbjct 1219 AGTTGGAAGATACTTTTGGTGAATTCTTTATCGTTGGTCAGCCTGTTAAAGTCGATTTGC 1278 Query 1356 TTTGGAGAGAAGGCTATAAGCTCCACCCAGCAATGCTTCCATCTTTTATTTCACCAAGTC 1415 ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 1279 TTTGGAGAGAAGGTTATAAGCTCCACCCAGCGATGCTTCCGTCTTTTATTTCACCGAGTC 1338 Query 1416 TAGCTCAGAGAATTCTGAGAACTGGGAAATCTATAAACTTTCTTCGTGTTTGCTGTGATG 1475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1339 TAGCTCAGAGAATTCTGAGAACTGGGAAATCTATAAACTTTCTTCGTGTTTGCTGTGATG 1398 Query 1476 ACCACGGGTGGGCTGATGCAGCTTCAGAAGCAGCAGCTGCCTCTGGGACAACAACTAGGC 1535 | |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| Sbjct 1399 ATCACGGGTGGGCTGATGCAGCTTCAGAAGCAGCAGCTGCATCTGGGACGACGACTAGGC 1458 Query 1536 GAGGAGGTCTCGGGTATGGTGAAACAGATGCACTTGAACATCTTGTAACCGAGGCAGCAA 1595 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1459 GAGGAGGTCTCGGGTATGGTGAAACAGATGCACTTGAACATCTTGTTACCGAGGCAGCAA 1518 Query 1596 AGAGAATCGACAAGCATCTGTTGGATGTTCTATATAAGAGATATAAATTTAAGGAGCATT 1655 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1519 AAAGAATCGACAAGCATCTGTTGGATGTTCTATATAAGAGATATAAATTCAAGGAGCATT 1578 Query 1656 GTCTTGCGATTAAGCGTTATTTACTACTTGGTCAAGGTGATTTTGTCCAGTACTTGATGG 1715 ||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1579 GTCTTGCCATTAAGCGTTATTTACTACTTGGTCAAGGTGATTTTGTTCAATACTTGATGG 1638 Query 1716 ATATTGTAGGACCCAAGCTTTCTGAGCCAGCCAATAATATTAGTTCATTTGAGCTAGCTG 1775 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1639 ATATTGTAGGACCTAAGCTTTCTGAGCCAGCCAATAATATTAGTTCATTTGAACTAGCTG 1698 Query 1776 GGTTTCTTGAGGCTGCAATACGAGCATCAAATGCACAGTATGATGACCGTGACATGCTAG 1835 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1699 GGTTTCTTGAGGCTGCAATACGAGCATCAAATGCGCAGTATGATGACCGTGACATGCTAG 1758 Query 1836 ACAGATTGAGAGTGAAGATGATGCCTCATGGCAGTGGAGACAGAGGCTGGGATGTATTCT 1895 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1759 ACAGATTGAGAGTGAAGATGATGCCTCATGGCAGTGGAGACAGAGGCTGGGATGTATTCT 1818 Query 1896 CATTGGAATACGAGGCAAGGGTTCCATTAGATACCGTGTTTACTGAGTCTGTTTTGTCTA 1955 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1819 CATTGGAATATGAGGCAAGGGTTCCATTAGATACCGTGTTTACTGAGTCTGTTTTGTCCA 1878 Query 1956 AATACCTGAGAGTGTTCAATTTTCTCTGGAAGTTGAAACGGGTAGAGCATGCTCTTATCG 2015 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1879 AATACCTGAGAGTGTTCAATTTTCTCTGGAAGTTGAAACGGGTAGAGCATGCTCTTATCG 1938 Query 2016 GAATTTGGAAGACCATGAAACCAAATTGCATCACTTCGAACTCATTTGTTAAGCTTCAAA 2075 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1939 GAATTTGGAAGACCATGAAACCAAATTGCATCACTTCGAACTCATTCGTTAAGCTCCAAA 1998 Query 2076 GTTCGGTGAAGTTGCAATTACTCTCAGCCCTGAGGCGGTGCCAGGTCCTTTGGAATGAAA 2135 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1999 CTTCGGTGAAGTTGCAATTGCTCTCAGCCCTGAGGCGGTGCCAGGTCCTTTGGAATGAAA 2058 Query 2136 TGAACCATTTTGTTACTAACTTTCAGTATTACATCATGTTTGAGGTATTGGAGGTATCAT 2195 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 2059 TGAACCATTTTGTTACTAACTTTCAGTATTACATCATGTTTGAAGTATTGGAGGTGTCAT 2118 Query 2196 GGTCTAATTTCTCAAAAGAGATGGAAGCTGCTAAAGACCTCGATGATCTCTTGGCAGCGC 2255 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | Sbjct 2119 GGTCTAATTTCTCAAAAGAGATGGAAGCTGCTAAAGACTTGGATGATCTCTTGGCAGCAC 2178 Query 2256 ATGAGAAGTACCTCAACGCCATTGTTGGAAAATCTCTTCTGGGTGAACAGTCACAGACCA 2315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2179 ATGAGAAGTACCTCAACGCCATTGTTGGAAAATCTCTTCTGGGTGAACAGTCACAGACCA 2238 Query 2316 TCCGCGAATCACTTTTCGTCCTGTTTGAGCTTATATTACGGTTCAGGAGTCATGCAGATC 2375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2239 TCCGCGAATCACTTTTCGTCCTGTTTGAGCTTATATTACGGTTCAGGAGTCATGCAGATC 2298 Query 2376 GTTTGTATGAAGGAATTCACGAGTTGCAAATAAGATCTAAAGAATCAGGACGAGaaaaaa 2435 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2299 GTTTGTATGAAGGAATTTACGAGTTGCAAATAAGATCTAAAGAATCAGGACGAGAAAAAA 2358 Query 2436 aCAAATCGCAAGAGCCCGGTTCATGGATCAGTGAGGGTAGGAAGGGCTTAACACAGCGTG 2495 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2359 ACAAATCGCTAGAGCCCGGTTCATGGATCAGTGAGGGTAGGAAGGGCTTAACACAGCGTG 2418 Query 2496 CTGGAGAATTTCTACAAAGCATGAGTCAAGATATGGACAGTATTGCAAAGGAATACACAT 2555 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2419 CGGGAGAATTTCTACAAAGCATGAGTCAAGATATGGACAGTATTGCAAAGGAATACACAT 2478 Query 2556 CGTCACTTGATGGATTCCTATCTCTCTTGCCTCTGCAACAATCTGTAGATCTCAAGTTTC 2615 | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2479 CTTCACTCGATGGATTCCTATCTCTTTTGCCTCTGCAACAATCTGTAGATCTCAAGTTTC 2538 Query 2616 TCTTTTTCCGGCTTGACTTCACTGAGTTCTACAGCCGATTGCATTCCAAAGGATAAGAAA 2675 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2539 TCTTCTTCCGGCTTGACTTCACTGAGTTCTACAGCCGATTGCATTCCAAAGGATAAGAAA 2598 Query 2676 GTTGAAAGAGTATCAGGTTTAGTTGAAAAGCATATTGCACAATCGCAAGAGAAGAAGACA 2735 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2599 GTTGAAAGAGTATCAGGTTTAGTTGAAAAGCATATTGCACAATAGCAAGAGAAGAAGACA 2658 Query 2736 TTATCTACGTCTTTCACTAACCGCTGACTGCAGCATGGGCTCTCCTGAACCAGGGATGCA 2795 | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 2659 TGATCTACGTCTTTCACTAACCGCTGACTGCAGCATGGGCTC-C-TGAACCAGGGATGCA 2716 Query 2796 GAGGTTCTTTTCTTAAAATCTAGGTGCGTGGGAGAATCTGTTTCTTATTTA-GAGACTGC 2854 |||||||| |||||||||||||||||||||| ||||||| || |||||||| |||||||| Sbjct 2717 GAGGTTCTATTCTTAAAATCTAGGTGCGTGGAAGAATCT-TT-CTTATTTACGAGACTGC 2774 Query 2855 CTCATAGATTTTCTGTCTTTTGCATAGATTG-TTTTTTCAA-TGGCTTGTTTCAAAGTTT 2912 |||||||||||| ||||||||||| |||||| |||||| || |||||||||||||||||| Sbjct 2775 CTCATAGATTTTGTGTCTTTTGCACAGATTGCTTTTTTTAAATGGCTTGTTTCAAAGTTT 2834 Query 2913 AGGATTGGGAAACAGATTCTTTGTGTTGGTAAATTGGGGAAGGTTTGTGTTTGAGTTTGT 2972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2835 AGGATTGGGAAACAGATTCTTTGTGTTGGTAAATTGGGGAAGGTTTGTGTTTGAGTTTGT 2894 Query 2973 GCTATAAGTCTGATGATCTCCAGCTTTAGttttttttCTT-----C-TTC-T----GTGG 3021 ||||| ||||||||||||||||||||||||||||||| || | ||| | |||| Sbjct 2895 GCTATCAGTCTGATGATCTCCAGCTTTAGTTTTTTTTTTTTTTTACGTTCCTCCATGTGG 2954 Query 3022 TTCACTGATTTGTATGATTTGTTTTATGACTTGGTTGATATAAGAAGGAATCAGTTGCTT 3081 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2955 TTCACTGATTTGTATGATTTGTTTTGTGACTTGGTTGATATAAGAAGGAATCAGTTGCTT 3014 Query 3082 CTTCAT 3087 |||||| Sbjct 3015 CTTCAT 3020 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 116670420435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5