BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06680.1
Length=3089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487478 jgi|Araly1|487478|fgenesh2_kg.6__612__AT5G06680.1 4822 0.0
> Ahg487478 jgi|Araly1|487478|fgenesh2_kg.6__612__AT5G06680.1
Length=3020
Score = 4822 bits (2611), Expect = 0.0
Identities = 2879/3006 (96%), Gaps = 28/3006 (1%)
Strand=Plus/Plus
Query 101 aaaaaaaggtgaaatcgaa--gaagaaga-aaaaaaaggcaaaagCTTGA-ATTGATTAT 156
|||||||| |||||||||| |||||||| |||||||||||||||||| | |||| ||
Sbjct 24 AAAAAAAGTTGAAATCGAATCGAAGAAGATAAAAAAAGGCAAAAGCTT-ACATTG---AT 79
Query 157 GGAAGACGACGATCAGCAGAAGGCTGCAGATCTAGTACAAGAGCTTGTTCTTCGTCTCGT 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 GGAAGACGACGATCAGCAGAAGGCTGCAGATCTAGTACAAGAGCTTGTTCTTCGTCTCGT 139
Query 217 CTCACAAAACCCTCAAACCCCTAATCTCGATCCCAATTCTCCCGCCTTCCTCAAAACCCT 276
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CTCCCAAAACCCTCAAACCCCTAATCTCGATCCCAATTCTCCCGCCTTCCTCAAAACCCT 199
Query 277 TCGTTACGCTTTTCGTATCCTCTCTAGTCGTCTTACTCCTTCCGTCCTCCCTGACGCCAC 336
||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 200 TCGTTACGCCTTTCGTATCCTCTCTAGCCGCCTTACTCCCTCCGTCCTCCCTGACGCCAC 259
Query 337 CGCTATCGCTGAGTCTCTCAAACGCCGTCTCGCTACTCAGGGTAAGTCCTCCGACGCACT 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 CGCTATCGCTGAGTCTCTCAAACGCCGTCTCGCTACTCAGGGTAAGTCCTCCGACGCACT 319
Query 397 CGCTTTTGCCGATCTCTACACTAAGTTCGCTTCCAAAACTGGACCTGGCAGTGTCAATAA 456
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 320 CGCTTTTGCCGATCTCTACACTAAGTTCGCTTCCAAGACTGGACCAGGCAGTGTCAATAA 379
Query 457 CAAATGGGCTCTTGTTTATTTGCTTAAAATTGTTTCTGACGATCGTAAATCGGCTATAAA 516
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 380 TAAATGGGCTCTTGTTTATTTGCTTAAAATCGTTTCTGATGATCGTAAATCGGCTATAAA 439
Query 517 TGGTCTTGATTCCTCGGTTTTGTTACCTAATTTGGGGATTGGTGATACTGGTAATGGGGT 576
|||||||||||| |||||||||||||||||||||||| |||||||| |||||||| | ||
Sbjct 440 TGGTCTTGATTCGTCGGTTTTGTTACCTAATTTGGGGCTTGGTGATGCTGGTAAT-GTGT 498
Query 577 TTT-GAGCCGTGGAGAGGCTAAGAAGAAGGATTGGAGTAATGGGGTTTTGTTGGTTAGTA 635
||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TTTCGCGCCGTGGGGAGGCTAAGAAGAAGGATTGGAGTAATGGGGTTTTGTTGGTTAGTA 558
Query 636 AAGATCCTGAGAATTTGAGGGATATTGCGTTTAGAGAGTATGCCATTTTGGTTAAGGAAG 695
||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 559 AAGATCCTGAGAATTTGCGAGATATTGCGTTTAGAGAGTATGCGGTTTTGGTTAAGGAAG 618
Query 696 AGAATGAAGTGACGGAGGAGGTTCTAGTGAGGGATGTTTTGTATGCTAGCCAAGGAATTG 755
||||||||||||| |||||||||||||| |||||||||||||||||| |||||| ||||
Sbjct 619 AGAATGAAGTGACTGAGGAGGTTCTAGTTAGGGATGTTTTGTATGCTTCCCAAGGTATTG 678
Query 756 ATGGGAAATATGTCAAATTTAACAGTGAAATCGACGGTTATGCCGTGCAGGAGTCTGTTA 815
||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 679 ATGGGAAATATGTGAAATTTAACAGCGAAATTGACGGTTATGCGGTGCAGGAGTCTGTTA 738
Query 816 AGGTGCCTCGAGCTACGAGGATTATGGTTCGTATGCTCTCTGAGCTTGGTTGGTTGTTTA 875
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 739 AGGTGCCTCGAGCTACTAGGATTATGGTACGTATGCTCTCTGAGCTTGGCTGGTTGTTTA 798
Query 876 GAAAGGTTAAGACTTTTATAACTGAGAGTATGGATCGGTTTCCAGCTGAGGATGTGGGAA 935
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 799 GAAAGGTTAAGACTTTTATAACCGAGAGTATGGATCGGTTTCCAGCTGAGGAAGTGGGAA 858
Query 936 CTGTTGGGCAAGCGTTTTGTGCGGCGTTGCAAGATGAGCTTTCTGATTATTATAAGTTGT 995
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 859 CTGTTGGGCAAGCGTTTTGTGCGGCATTGCAAGATGAGCTCTCTGATTATTATAAGTTAT 918
Query 996 TAGCTGTGCTAGAAGCGCAGGCCATGAATCCTATTCCTTTGGTTTCTGAATCAGCAAGCT 1055
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 919 TGGCTGTGCTTGAAGCACAGGCCATGAATCCTATTCCTTTGGTTTCTGAATCAGCTAGCT 978
Query 1056 CAAACAATTACCTTTCTTTGAGGAGGTTGTCGGTATGGTTTGCGGAGCCTATGGTGAAAA 1115
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 CAAGTAATTACCTTTCTTTGAGGAGGTTGTCGGTATGGTTTGCGGAGCCTATGGTGAAAA 1038
Query 1116 TGAGACTGATGGCTGTTTTGGTTGACAAGTGTAAGGTTTTGAGAGGTGGGGCGATGGCTG 1175
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1039 TGAGACTGATGGCTGTTTTGGTTGACAAGTGTAAGGTACTGAGAGGTGGGGCGATGGCTG 1098
Query 1176 GGGCTATCCATTTGCACGCACAGCATGGTGATCCGCTTGTTCATGATTTTATGATGAGTT 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1099 GGGCTATCCATTTGCACGCACAGCATGGTGATCCGCTTGTTCATGATTTTATGATGAATC 1158
Query 1236 TGCTTCGATGTGTGTGTTCTCCGCTATTTGAAATGGTGAGAAGTTGGGTTCTAGAAGGGG 1295
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1159 TGCTCCGATGTGTGTGTTCTCCGCTGTTTGAAATGGTGAGAAGTTGGGTTCTAGAAGGAG 1218
Query 1296 AGTTGGAAGATACTTTTGGTGAATTCTTTGTCGTAGGTCAGCCGGTTAAAGTCGATTTGC 1355
||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct 1219 AGTTGGAAGATACTTTTGGTGAATTCTTTATCGTTGGTCAGCCTGTTAAAGTCGATTTGC 1278
Query 1356 TTTGGAGAGAAGGCTATAAGCTCCACCCAGCAATGCTTCCATCTTTTATTTCACCAAGTC 1415
||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1279 TTTGGAGAGAAGGTTATAAGCTCCACCCAGCGATGCTTCCGTCTTTTATTTCACCGAGTC 1338
Query 1416 TAGCTCAGAGAATTCTGAGAACTGGGAAATCTATAAACTTTCTTCGTGTTTGCTGTGATG 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 TAGCTCAGAGAATTCTGAGAACTGGGAAATCTATAAACTTTCTTCGTGTTTGCTGTGATG 1398
Query 1476 ACCACGGGTGGGCTGATGCAGCTTCAGAAGCAGCAGCTGCCTCTGGGACAACAACTAGGC 1535
| |||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1399 ATCACGGGTGGGCTGATGCAGCTTCAGAAGCAGCAGCTGCATCTGGGACGACGACTAGGC 1458
Query 1536 GAGGAGGTCTCGGGTATGGTGAAACAGATGCACTTGAACATCTTGTAACCGAGGCAGCAA 1595
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1459 GAGGAGGTCTCGGGTATGGTGAAACAGATGCACTTGAACATCTTGTTACCGAGGCAGCAA 1518
Query 1596 AGAGAATCGACAAGCATCTGTTGGATGTTCTATATAAGAGATATAAATTTAAGGAGCATT 1655
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1519 AAAGAATCGACAAGCATCTGTTGGATGTTCTATATAAGAGATATAAATTCAAGGAGCATT 1578
Query 1656 GTCTTGCGATTAAGCGTTATTTACTACTTGGTCAAGGTGATTTTGTCCAGTACTTGATGG 1715
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1579 GTCTTGCCATTAAGCGTTATTTACTACTTGGTCAAGGTGATTTTGTTCAATACTTGATGG 1638
Query 1716 ATATTGTAGGACCCAAGCTTTCTGAGCCAGCCAATAATATTAGTTCATTTGAGCTAGCTG 1775
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1639 ATATTGTAGGACCTAAGCTTTCTGAGCCAGCCAATAATATTAGTTCATTTGAACTAGCTG 1698
Query 1776 GGTTTCTTGAGGCTGCAATACGAGCATCAAATGCACAGTATGATGACCGTGACATGCTAG 1835
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1699 GGTTTCTTGAGGCTGCAATACGAGCATCAAATGCGCAGTATGATGACCGTGACATGCTAG 1758
Query 1836 ACAGATTGAGAGTGAAGATGATGCCTCATGGCAGTGGAGACAGAGGCTGGGATGTATTCT 1895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 ACAGATTGAGAGTGAAGATGATGCCTCATGGCAGTGGAGACAGAGGCTGGGATGTATTCT 1818
Query 1896 CATTGGAATACGAGGCAAGGGTTCCATTAGATACCGTGTTTACTGAGTCTGTTTTGTCTA 1955
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1819 CATTGGAATATGAGGCAAGGGTTCCATTAGATACCGTGTTTACTGAGTCTGTTTTGTCCA 1878
Query 1956 AATACCTGAGAGTGTTCAATTTTCTCTGGAAGTTGAAACGGGTAGAGCATGCTCTTATCG 2015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 AATACCTGAGAGTGTTCAATTTTCTCTGGAAGTTGAAACGGGTAGAGCATGCTCTTATCG 1938
Query 2016 GAATTTGGAAGACCATGAAACCAAATTGCATCACTTCGAACTCATTTGTTAAGCTTCAAA 2075
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1939 GAATTTGGAAGACCATGAAACCAAATTGCATCACTTCGAACTCATTCGTTAAGCTCCAAA 1998
Query 2076 GTTCGGTGAAGTTGCAATTACTCTCAGCCCTGAGGCGGTGCCAGGTCCTTTGGAATGAAA 2135
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CTTCGGTGAAGTTGCAATTGCTCTCAGCCCTGAGGCGGTGCCAGGTCCTTTGGAATGAAA 2058
Query 2136 TGAACCATTTTGTTACTAACTTTCAGTATTACATCATGTTTGAGGTATTGGAGGTATCAT 2195
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 2059 TGAACCATTTTGTTACTAACTTTCAGTATTACATCATGTTTGAAGTATTGGAGGTGTCAT 2118
Query 2196 GGTCTAATTTCTCAAAAGAGATGGAAGCTGCTAAAGACCTCGATGATCTCTTGGCAGCGC 2255
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 2119 GGTCTAATTTCTCAAAAGAGATGGAAGCTGCTAAAGACTTGGATGATCTCTTGGCAGCAC 2178
Query 2256 ATGAGAAGTACCTCAACGCCATTGTTGGAAAATCTCTTCTGGGTGAACAGTCACAGACCA 2315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 ATGAGAAGTACCTCAACGCCATTGTTGGAAAATCTCTTCTGGGTGAACAGTCACAGACCA 2238
Query 2316 TCCGCGAATCACTTTTCGTCCTGTTTGAGCTTATATTACGGTTCAGGAGTCATGCAGATC 2375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2239 TCCGCGAATCACTTTTCGTCCTGTTTGAGCTTATATTACGGTTCAGGAGTCATGCAGATC 2298
Query 2376 GTTTGTATGAAGGAATTCACGAGTTGCAAATAAGATCTAAAGAATCAGGACGAGaaaaaa 2435
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2299 GTTTGTATGAAGGAATTTACGAGTTGCAAATAAGATCTAAAGAATCAGGACGAGAAAAAA 2358
Query 2436 aCAAATCGCAAGAGCCCGGTTCATGGATCAGTGAGGGTAGGAAGGGCTTAACACAGCGTG 2495
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2359 ACAAATCGCTAGAGCCCGGTTCATGGATCAGTGAGGGTAGGAAGGGCTTAACACAGCGTG 2418
Query 2496 CTGGAGAATTTCTACAAAGCATGAGTCAAGATATGGACAGTATTGCAAAGGAATACACAT 2555
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2419 CGGGAGAATTTCTACAAAGCATGAGTCAAGATATGGACAGTATTGCAAAGGAATACACAT 2478
Query 2556 CGTCACTTGATGGATTCCTATCTCTCTTGCCTCTGCAACAATCTGTAGATCTCAAGTTTC 2615
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2479 CTTCACTCGATGGATTCCTATCTCTTTTGCCTCTGCAACAATCTGTAGATCTCAAGTTTC 2538
Query 2616 TCTTTTTCCGGCTTGACTTCACTGAGTTCTACAGCCGATTGCATTCCAAAGGATAAGAAA 2675
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2539 TCTTCTTCCGGCTTGACTTCACTGAGTTCTACAGCCGATTGCATTCCAAAGGATAAGAAA 2598
Query 2676 GTTGAAAGAGTATCAGGTTTAGTTGAAAAGCATATTGCACAATCGCAAGAGAAGAAGACA 2735
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2599 GTTGAAAGAGTATCAGGTTTAGTTGAAAAGCATATTGCACAATAGCAAGAGAAGAAGACA 2658
Query 2736 TTATCTACGTCTTTCACTAACCGCTGACTGCAGCATGGGCTCTCCTGAACCAGGGATGCA 2795
| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2659 TGATCTACGTCTTTCACTAACCGCTGACTGCAGCATGGGCTC-C-TGAACCAGGGATGCA 2716
Query 2796 GAGGTTCTTTTCTTAAAATCTAGGTGCGTGGGAGAATCTGTTTCTTATTTA-GAGACTGC 2854
|||||||| |||||||||||||||||||||| ||||||| || |||||||| ||||||||
Sbjct 2717 GAGGTTCTATTCTTAAAATCTAGGTGCGTGGAAGAATCT-TT-CTTATTTACGAGACTGC 2774
Query 2855 CTCATAGATTTTCTGTCTTTTGCATAGATTG-TTTTTTCAA-TGGCTTGTTTCAAAGTTT 2912
|||||||||||| ||||||||||| |||||| |||||| || ||||||||||||||||||
Sbjct 2775 CTCATAGATTTTGTGTCTTTTGCACAGATTGCTTTTTTTAAATGGCTTGTTTCAAAGTTT 2834
Query 2913 AGGATTGGGAAACAGATTCTTTGTGTTGGTAAATTGGGGAAGGTTTGTGTTTGAGTTTGT 2972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2835 AGGATTGGGAAACAGATTCTTTGTGTTGGTAAATTGGGGAAGGTTTGTGTTTGAGTTTGT 2894
Query 2973 GCTATAAGTCTGATGATCTCCAGCTTTAGttttttttCTT-----C-TTC-T----GTGG 3021
||||| ||||||||||||||||||||||||||||||| || | ||| | ||||
Sbjct 2895 GCTATCAGTCTGATGATCTCCAGCTTTAGTTTTTTTTTTTTTTTACGTTCCTCCATGTGG 2954
Query 3022 TTCACTGATTTGTATGATTTGTTTTATGACTTGGTTGATATAAGAAGGAATCAGTTGCTT 3081
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2955 TTCACTGATTTGTATGATTTGTTTTGTGACTTGGTTGATATAAGAAGGAATCAGTTGCTT 3014
Query 3082 CTTCAT 3087
||||||
Sbjct 3015 CTTCAT 3020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116670420435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5