BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06690.2
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487479 jgi|Araly1|487479|fgenesh2_kg.6__613__AT5G06690.1 867 0.0
> Ahg487479 jgi|Araly1|487479|fgenesh2_kg.6__613__AT5G06690.1
Length=761
Score = 867 bits (469), Expect = 0.0
Identities = 508/526 (97%), Gaps = 5/526 (1%)
Strand=Plus/Plus
Query 1 ATGGCATTTGAAAACTTAAAAATATCTCGTCACATATCTTCATCGACAAAAAATTTACTG 60
||||||| |||||||||||||||||||| ||| |||||||||||| | ||||||||||||
Sbjct 1 ATGGCATATGAAAACTTAAAAATATCTCATCATATATCTTCATCGTC-AAAAATTTACTG 59
Query 61 AAAGCGaaaaaaa-TAATGGCAGCTTTGGCATCAAACCCCCAAATGCTAACTAGACAAGC 119
||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 AAAGC-AAAAAAACTAATGGCAGCTTTGGCATCAAACCCTCAAATGCTAACTAGACAAGC 118
Query 120 TCACGGTAACAAGAAGGAACAATTGTGGAGGAAAGAGAGTTTAAATTTGGAGAAGAAGTG 179
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 119 CCACGGTAACAAGAAGGAACAATTTTGGAGGAAAGAGAGTTTGAATTTGGAGAAGAAGTG 178
Query 180 TGGGTTTTGTGTGAGCGTTTACAGTAATGAAAAGCTTGGGAGGTCACATATGGAGAAAGA 239
||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 179 TGGGTTTTGTGTGAGTGTTTACAATAATGAAAAGCTTGGGAGGCCACATATGGAGAAAGA 238
Query 240 GTGGAGACTAAAAGCCTTTTGGTCAAACATAGCTCAGCCTACGACTTTGGAGATGGAACC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTGGAGACTAAAAGCCTTTTGGTCAAACATAGCTCAGCCTACGACTTTGGAGATGGAACC 298
Query 300 CATTAACAACGTTGAAGAACTCGATGCTGTTCTCTCTCACGCACGCCAACTCTCTCAGCC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CATTAACAACGTTGAAGAACTCGATGCTGTTCTCTCTCACGCACGCCAACTCTCTCAGCC 358
Query 360 TATCATCATCGAATGGATGGCTTCTTGGTGTCGAAAATGTATTTACTTGAAGCCTAAGTT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 359 TATCATCATCGAATGGATGGCTTCTTGGTGTCGAAAATGTATTTACTTGAAGCCGAAGTT 418
Query 420 GGAGAAATTAGCGGCAGAATATAATAACCGAGCAAAGTTTTACTATGTGGATGTAAACAA 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGAGAAATTAGCTGCAGAATATAATAACCGAGCAAAGTTTTACTATGTGGATGTAAACAA 478
Query 480 GGTCCCTCAAACCTTGGTGAAACGTGGAAACATTTCGGTAAAATGC 525
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 GGTCCCTCAAACCTTGGTGAAACGTGGAAACATTTCG--AAAATGC 522
Score = 224 bits (121), Expect = 9e-58
Identities = 211/249 (85%), Gaps = 27/249 (11%)
Strand=Plus/Plus
Query 745 CAGTTATGGAAGGAAGATGAGATGAAAGAGGAGGTGATTGGAGGTCACAAAGGATGGCTT 804
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 531 CAGTTATGGAAGGAAGATGAGATGAAAGAAGAGGTGATAGGAGGTCACAAAGGATGGCTT 590
Query 805 GTCATCGAAGAAGTTAGAGAATTGATCAACAAATTTGTCTAGTTCTCTCttttttttcat 864
|||||||||||||||||||||||||||||||||| |||||||||| | ||||||| | |
Sbjct 591 GTCATCGAAGAAGTTAGAGAATTGATCAACAAATATGTCTAGTTCACA-TTTTTTTCC-T 648
Query 865 ttcctaccttttttttttcttttaaaaaaaaTTAATATGTACAGTCAGTTTTCTTATTTT 924
| ||| |||||||||||| | || | | | |||||||||||||||||||||
Sbjct 649 T-CCT---TTTTTTTTTTCTCT-AA------T-A-T--GTACAGTCAGTTTTCTTATTTA 693
Query 925 CTTTCTTTA---T--A---C-AATTTCAAACTTAAAAACTCCtttttttGATAATCAAGA 975
|||| |||| | | | |||||||||||||||||||| |||||| | |||||||||
Sbjct 694 CTTTATTTACAGTCTATATCCAATTTCAAACTTAAAAACTC-TTTTTTCGGTAATCAAGA 752
Query 976 AATTTCACA 984
|||||||||
Sbjct 753 AATTTCACA 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36941106573
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5