BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06700.1
Length=2207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487481 jgi|Araly1|487481|fgenesh2_kg.6__615__AT5G06700.1 3121 0.0
Ahg904095 jgi|Araly1|904095|Al_scaffold_0003_1223 941 0.0
> Ahg487481 jgi|Araly1|487481|fgenesh2_kg.6__615__AT5G06700.1
Length=2081
Score = 3121 bits (1690), Expect = 0.0
Identities = 1974/2106 (94%), Gaps = 39/2106 (2%)
Strand=Plus/Plus
Query 109 ACACCACATTCCCCACTACTAGTG-ACCATCCACCTCTCCGTCTATGGCGTCAGACGCCG 167
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1 ACACCACATTCCCCACTACTAGTGCCCCCTCCACCTCTCCGTCTATGGCGTCAGACGCCG 60
Query 168 TTAAGTATATGCCAATCCACGGCGGAGG---AACAACAGCAACAACCGCCGCCGACATCA 224
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 61 TTAAGTATATGCCAATCCACGGCGGAGGAACAACAACAACAACAACCGCCGCCGACATCA 120
Query 225 AGAGCTTCTTCTCCGCTCTAAAACCCaaaaaaaCCTCAACTTTCGCTTACGCTTTCGTCA 284
||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 AGAGCTTCTTCTCTGCTTTGAAACCCAAAAAAACCTCAACTTTCGCTTACGCTTTTGTCA 180
Query 285 TAACCTTTGTCTCATTCACTCTCTTCTTTGCTTTTAGTCCTTCTCCAAACTCATCTTCTC 344
||||||| ||||| || ||||| || |||||||||||||||||||||||||| |||||||
Sbjct 181 TAACCTTCGTCTCTTTTACTCTGTTTTTTGCTTTTAGTCCTTCTCCAAACTCTTCTTCTC 240
Query 345 CTTGGTTCTCTAACATCTTCACTTCCTCCTCCACAACCACAA---C--T-TCAGACAACA 398
|||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 241 CTTGGTTCTCTAACATCTTCACTTCCTCCTCCACAACCACAACTTCGGTATCAGACAACA 300
Query 399 CTTCCGGATCTCAGTTCTCTTCAATTTTCTCATATATTCTTCCCAATGTCACTTCAACCA 458
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 301 CTTCCGGATCTCAGTTCTCTTCAATTTTCTCTTATATTCTTCCCAATGTCACTACAACCA 360
Query 459 AACCCACCAATAGATCCAGTGACGCCACAGATTCTCTCTCTGTTAACGCCACTTCTCCAC 518
||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 361 AACCCACCAATAGATCCAGTGACGCTACAGATCCTATCTCTGTTAACGCCACTTCTCCGT 420
Query 519 CTCTCAATTCGAATTCCAAAAACGGAACTTTACAAACACCGGCGCCGGAAACTCACACTC 578
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct 421 CTCTCAATTCGAATTCCAAAAACGGTACTTTACAAGCACCGGCGCCGGAAACTCATACTC 480
Query 579 CGGTTGCTAAAAACACAACCTTTGAGTCTCCGATCGTAAACGGAACCAACCCAGATGCAA 638
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 CGATTGCTAAAAACACAACCTTTGAGTCTCCGATCGTAAACGGAACCAACCCAGTTGCAA 540
Query 639 AGAACAACACTTCATCTCATCCTCTGCTTTCAGACAAATCTTCAACGACGGGATCGAATA 698
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGAACAACACTTTATCTCATCCTCTGCTTTCAGACAAATCTTCAACGACGGGATCGAATA 600
Query 699 ATCAGTCACGGACCACC-GCCGATACTGAAACCGTGAATAGAAACCAAACAACATCTCCG 757
||||||||||||||||| | |||||||||||||||||| |||||||| || ||| |||||
Sbjct 601 ATCAGTCACGGACCACCAG-CGATACTGAAACCGTGAAGAGAAACCAGACGACAGCTCCG 659
Query 758 GCGCCGTCGAAAGCACCCGTGTCGGTAGATCTGAAGACCAATTCCAGTTCCAATTCATCA 817
| |||||| ||| |||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 660 GTGCCGTCAAAATCACCGGTGTCGGTGGATCTGAAGGCCAATTCCAGTTCCAATTCATCA 719
Query 818 ACTGCTTCGTCTACACCGAAAAAGCAGACTAAAACCGTTGATTTGGTTTCGTCGGTGAAG 877
|||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 720 ACTGCTTCTTCTACACCGGAAAAGCAGACTAAAAGCGTTGATTTGGTTTCGTCGGTGAAG 779
Query 878 CAAGAGATCGAGAAATGGAGTGAATCTTTGAAGAATTGTGAGTTCTTCGACGGTGAATGG 937
||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| |||
Sbjct 780 CAAGAGATCGAGAAATGGAGTGAATCTCTGAAAAATTGCGAGTTCTTCGACGGTGAGTGG 839
Query 938 ATCAAAGATGATTCGTATCCGCTTTATAAACCTGGTTCGTGTAATCTTATCGATGAACAG 997
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 840 ATCAAAGATGATTCGTACCCGCTTTATAAACCCGGTTCGTGTAAGCTTATCGATGAACAG 899
Query 998 TTCAATTGTATTACCAACGGAAGACCAGACAAAGATTTCCAGAAATTGAAGTGGAAACCT 1057
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 900 TTCAATTGTATTTCAAACGGAAGACCCGACAAAGATTTCCAGAAATTGAAGTGGAAACCT 959
Query 1058 AAGAAATGTAGTTTACCAAGGTTAAATGGAGCTATATTGTTGGAGATGCTTAGAGGAAGA 1117
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 960 AAGAAATGTAGTTTACCAAGGTTAAATGGAGCTATTTTGCTGGAGATGCTTAGAGGAAGA 1019
Query 1118 AGACTTGTCTTTGTGGGTGATTCACTAAATAGGAACATGTGGGAATCTCTGGTTTGTATT 1177
||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1020 AGACTAGTCTTTGTGGGTGATTCTCTAAATAGGAACATGTGGGAATCACTGGTTTGTATT 1079
Query 1178 CTCAAAGGATCAGTGAAAGATGAGACTAAAGTCTATGAGGCTAGAGGAAGACATCATTTC 1237
|| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1080 CTTAAAGGATCAGTGAAAGATGAAACCAAAGTCTATGAGGCTAGAGGAAGACATCATTTT 1139
Query 1238 CGTGGGGAGGCTGAGTACTCATTCGTCTTCCAAGATTATAACTGCACGGTGGAGTTCTTT 1297
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CGTGGGGAGGCTGAGTACTCTTTCGTCTTCCAAGATTATAACTGCACGGTGGAGTTCTTT 1199
Query 1298 GTTTCACCCTTCTTGGTTCAAGAGTGGGAAATTGTAGACAAGAAAGGAACAAAGAAGGAG 1357
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTTTCACCGTTCTTGGTTCAAGAATGGGAAATTGTAGACAAGAAAGGAACAAAGAAGGAG 1259
Query 1358 ACTTTAAGGTTGGATTTGGTTGGGAAGTCCTCTGAGCAGTACAAAGGAGCTGATGTTATT 1417
|||||| || |||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 1260 ACTTTACGGCTGGATTTGGTTGGGAAGTCCTCTGAGCAGTACAAGGGAGCGGATATTATT 1319
Query 1418 GTCTTTAATACCGGACATTGGTGGACTCATGAGAAAACATCCAAAGGGGAGGATTATTAT 1477
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1320 GTATTTAATACCGGACATTGGTGGACTCACGAGAAAACATCTAAAGGGGAGGATTATTAT 1379
Query 1478 CAAGAAGGAAGTAATGTTTATCATGAACTCGCTGTTCTTGAAGCTTTTCGTAAAGCTTTG 1537
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1380 CAAGAAGGAAGCAATGTTTATCACGAACTCGCTGTTCTTGAAGCTTTTCGTAAAGCTTTG 1439
Query 1538 ACTACATGGGGTCGATGGGTTGAGAAGAATGTGAATCCGGCAAAGTCCCTCGTTTTCTTT 1597
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1440 ACTACATGGGGTCGATGGGTCGAGAAGAATGTGAATCCTGCAAAGTCCCTCGTTTTCTTT 1499
Query 1598 CGGGGCTATTCCGCATCCCATTTCAGTGGTGGGCAATGGAACTCAGGAGGAGCATGCGAT 1657
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CGGGGCTACTCCGCCTCCCATTTCAGTGGTGGGCAATGGAACTCAGGAGGAGCATGCGAT 1559
Query 1658 AGCGAAACAGAACCGATCAAGAACGATACATACCTAACCCCGTACCCGTCTAAAATGAAA 1717
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1560 AGCGAAACAGAACCGATCAAGAATGATACATACCTAACCCCATACCCGTCTAAAATGAAG 1619
Query 1718 GTGCTTGAGAAAGTGTTAAGAGGTATGAAAACACCTGTCACTTATCTAAACATCACGAGA 1777
||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1620 GTGCTTGAGAAAGTGCTAAGAGGTATGAAAACACCCGTCACGTATCTAAACATCACGAGA 1679
Query 1778 TTAACGGACTACAGGAAGGACGGTCACCCGTCAGTATACCGGAAACAGAGCTTATCGGAA 1837
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1680 TTAACGGACTACAGGAAGGACGGTCACCCATCAGTATACCGGAAACACAGCTTATCGGAA 1739
Query 1838 AAAGAGAAAAAGTCGCCATTGCTGTACCAAGACTGCAGCCATTGGTGCCTCCCCGGG-GT 1896
||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1740 AAAGAGAAAAAAACGCCTTTGCTGTACCAAGACTGCAGCCATTGGTGCCT-CCCGGGAGT 1798
Query 1897 TCCAGACTCTTGGAATGAAATCCTCTACGCTGAGCTGATCGTCAAACTCAATCAGCTCAG 1956
||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1799 TCCCGACTCTTGGAATGAAATCCTCTACGCGGAGCTGATCGTCAAACTCAATCAGGTCAG 1858
Query 1957 CCAAACACAACGAAAAACTTAAGGTTCTTCCACCCCCAATACTTGTTTGATCTCAACACT 2016
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1859 CCAAACACAACGTAAAACTTAAGGTTCTTCCA-CCCCAATACTTGTTTGATCTCAACACT 1917
Query 2017 TTTACTTTCTATTTTGATGGTAATTGTTGATTATAGAATGTGTAGAGTAAAAAAGAAAGA 2076
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1918 TTTACTTTCTATTTTGATGGTAATTGTTGATTATAGAATGTGTAGAGTAAAA--GA---- 1971
Query 2077 TGGAATATAATGGATCACTCGATATCTTTGTTACTATTGGTTTGTAAATGCTTTTGTCAC 2136
| | | | ||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1972 TC-A-----------C-C-CGATATCTTTGTTACCATTGGTT-GTAAATGCTTTTGTCAC 2016
Query 2137 GACGAATACAATATTTAGCTCCAAAGAGAGGTTACATATTCATATTTCTTATAATGGAAT 2196
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2017 GACGAATACTATATTTAGCTCCAAAGAGAGGTTACATATTCATATTT---ATAATGGAAT 2073
Query 2197 TGATTC 2202
||||||
Sbjct 2074 TGATTC 2079
> Ahg904095 jgi|Araly1|904095|Al_scaffold_0003_1223
Length=1680
Score = 941 bits (509), Expect = 0.0
Identities = 896/1079 (83%), Gaps = 41/1079 (4%)
Strand=Plus/Plus
Query 887 GAGAAATG-GAGT-GAATCTTTGAAGAATTGTGAGTTCTTCGACGGTGAATGGATCAAAG 944
|||||| | || | || ||| |||||| ||| ||||| ||||| || || ||| ||||||
Sbjct 567 GAGAAAAGTGA-TCGAGTCTCTGAAGAGTTGCGAGTTTTTCGAGGGAGATTGGGTCAAAG 625
Query 945 ATGATTCGTATCCGCTTTATAAACCTGGTTCGTGTAATCTTATCGATGAACAGTTCAATT 1004
| |||||||||||||| || ||||| || ||||||||||| |||||||||||||| ||||
Sbjct 626 ACGATTCGTATCCGCTCTACAAACCCGGGTCGTGTAATCTGATCGATGAACAGTTTAATT 685
Query 1005 GTAT-TACCAACGGAAGACCAGACAAAGATTTCCAGAAATTGAAGTGGAAACCTAAGAAA 1063
|||| | | ||||||||||| ||| ||||||||||||||||| |||||||| ||||||
Sbjct 686 GTATCT-CTAACGGAAGACCTGACGTGGATTTCCAGAAATTGAAATGGAAACCAAAGAAA 744
Query 1064 TG-TAGTTTACCAAGGTTAAATGGAGCTATATTGTTGGAGATGCTTAGAGGAAGAAGACT 1122
|| | |||||||||||||||||||| || |||| |||||||| ||||||||| ||| ||
Sbjct 745 TGCT-CTTTACCAAGGTTAAATGGAGGTAAATTGCTGGAGATGATTAGAGGAAAAAGGCT 803
Query 1123 TGTCTTTGTGGGTGATTCACTAAATAGGAACATGTGGGAATCTCTGGTTTGTATTCTCAA 1182
|| ||||| || ||||| || ||||| ||||||||||| ||| ||||||| ||||| ||
Sbjct 804 AGTGTTTGTTGGAGATTCGCTGAATAGAAACATGTGGGAGTCTTTGGTTTGCATTCTTAA 863
Query 1183 AGGATCAGTGAAAGATGAGACTAAAGTCTATGAGGCTAGA-GGAAGACATCATTTCCGTG 1241
|||||||||||||||||||| | |||||| ||||||| | ||||| ||||| ||||||
Sbjct 864 AGGATCAGTGAAAGATGAGAGTCAAGTCTTTGAGGCT-CATGGAAGGCATCAATTCCGTT 922
Query 1242 GGGAGGCTGAGTACTCATTCGTCTTCCAAGATTATAACTGCACGGTGGAGTTCTTTG-TT 1300
|||||||||||||||| || |||||| |||||||||| ||||| ||||||||||||| |
Sbjct 923 GGGAGGCTGAGTACTCCTTTGTCTTCAAAGATTATAATTGCACTGTGGAGTTCTTTGCAT 982
Query 1301 TCACCCTTCTTGGTTCAAGAGTGGGAAATTGTAGACAAGAAAGGAACAAAGAAGGAGACT 1360
| || |||||||||||||| |||||| || ||| || || || || ||||||||||||
Sbjct 983 T-GCCTTTCTTGGTTCAAGAATGGGAAGTTACAGAGAATAACGGGACGAAGAAGGAGACT 1041
Query 1361 TTAAGGTTGGATTTGGTTGGGAAGTCCTCTGAGCAGTACAAAGGAGCTGATGTTATTGTC 1420
|| |||| |||||||| |||||||| || ||||||||||||||||| ||| || ||||
Sbjct 1042 TTGCGGTTAGATTTGGTCGGGAAGTCATCGGAGCAGTACAAAGGAGCGGATATTCTTGTA 1101
Query 1421 TTTAATACCGGACATTGGTGGACTCATGAGAAAACATCCAAAGGGGAGGATTATTATCAA 1480
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1102 TTCAATACCGGACATTGGTGGACTCATGAGAAAACTTCCAAAGGGGAGGATTATTATCAA 1161
Query 1481 GAAGGAAGTAATGTTTATCATGAA-CTCGCTGTTCTTGAAGCTTTTCGTAAAGCTTTGAC 1539
||||| || |||||| | | ||| |||| ||| |||||||||||| ||||| |||||
Sbjct 1162 GAAGGGAGCAATGTTCACCC-GAAACTCGATGTGGATGAAGCTTTTCGAAAAGCATTGAC 1220
Query 1540 TACATGGGGTCGATGGGTTGAGAAGAATGTGAATCCG--GCAAAGTCCCTCGTTTTCTTT 1597
|| ||||||||||||||||| |||||||||||||| | ||| ||||| ||||| |||
Sbjct 1221 GACTTGGGGTCGATGGGTTGATAAGAATGTGAATCCAAAG-AAA-TCCCTTGTTTT-TTT 1277
Query 1598 CGG-GGCTATTCCGCATCCCATTTCAGTGGTGGGCAATGGAACT-CAGGAGGAGCATGCG 1655
| | || |||||| | || |||||||| || ||||||||||| | | |||||||||||||
Sbjct 1278 CCGTGGTTATTCCCCGTCACATTTCAGCGGCGGGCAATGGAA-TGCGGGAGGAGCATGCG 1336
Query 1656 AT-AGCGAAACAGAACCGATCAAGAACGATACATACCTAACCCCGTACCCGTCTAAA-AT 1713
|| | ||||||||||||||||||||||| || |||||||| || ||| || | || ||
Sbjct 1337 ATGAT-GAAACAGAACCGATCAAGAACGAGACTTACCTAACTCCTTACATGT-TGAAGAT 1394
Query 1714 GAA-AGTGCTTGAGAA-AGTGT-TAAGAGGTATGAAAACACCTGTCACTTATCTAAACAT 1770
| | | | ||||| || ||| | | || || |||||||| |||||||| ||||| |||||
Sbjct 1395 GGAGA-TACTTGA-AAGAGT-TCTCAGTGGAATGAAAACGCCTGTCACGTATCTCAACAT 1451
Query 1771 CACGAGATTAACGGACTACAGGAAGGACGGTCACCCGTC-AGTATACCGGAAACAGAG-C 1828
|||||| ||||| || ||||||||||||| ||| ||||| | ||||||||||||| | |
Sbjct 1452 CACGAGGTTAACTGATTACAGGAAGGACGCTCATCCGTCGA-TATACCGGAAACAAAAAC 1510
Query 1829 TTATCGGAAAAAGAGAA--AAAGTCGCCATTGCTGTACCAAGACTGCAGCCATTGGTGCC 1886
| ||| | | |||| || ||| || |||||| ||||||||||||| ||||| |||||||
Sbjct 1511 T-ATCCGCAGAAGA-AAGTAAA-TCACCATTGTTGTACCAAGACTGTAGCCACTGGTGCC 1567
Query 1887 TCCCCGGGGTTCCAGACTCTTGGAATGAAATCCTCTACGCTGAGCTGA-TCGTCAAACT 1944
|||| ||||| || || |||||||| ||||| ||||| || ||| | | |||| |||||
Sbjct 1568 TCCCTGGGGTGCCTGATTCTTGGAACGAAATTCTCTATGCCGAGAT-ACTCGTAAAACT 1625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83074824345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5