BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06710.1
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940115 jgi|Araly1|940115|scaffold_600659.1 1616 0.0
> Ahg940115 jgi|Araly1|940115|scaffold_600659.1
Length=1072
Score = 1616 bits (875), Expect = 0.0
Identities = 985/1039 (95%), Gaps = 3/1039 (0%)
Strand=Plus/Plus
Query 58 TCTTATTTTCTTCGTAAGAGATGGAACTAGCGTTGTCTCTAGGCGACAATACTAAGAAAC 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTATTTTCTTCGTAAGAGATGGAACTAGCGTTGTCTCTAGGCGACAATACTAAGAAAC 60
Query 118 AGTTCTCTTTTATGGAGAAGAACTCGAAGATTAATAATCCCTCTGTCTCGTCGACATCTA 177
|||| |||||| |||||| |||||||||||||||||||||||||| ||||||||| || |
Sbjct 61 AGTTATCTTTTGTGGAGATGAACTCGAAGATTAATAATCCCTCTGCCTCGTCGACCTCAA 120
Query 178 CTTCCGAGAAGGATCTTGGGTTCTGCATGGCTTTAGATGTTGCTTTTGGTGGTCACAGAT 237
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 121 CTTCCGACAAGGATCTTGGGTTCTGCATGGGTTTAGATGTTGCTTTTGGTGGTCACAAAT 180
Query 238 CGTTGTCATCCTCTTCGTCTCCGTCGGTAGAGGATGAGAAGAAGAAACCGGCGCCCAGAG 297
||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||
Sbjct 181 CGTTGTCATCCTCTTCGTCTCCGCCGGTAGAAGATGAGAAGAAGAAACCGGTGCCGAGAG 240
Query 298 CaaaaaaaTCTGA-CGAATTTAGGGTTTCGTCTTCTGTAGATCCACCATTACAGCTTCAG 356
|| |||| ||||| ||| |||||||||||||| | |||||||||||| |||||||||||
Sbjct 241 CAGAAAATTCTGATGGAA-TTAGGGTTTCGTCTCCAGTAGATCCACCACTACAGCTTCAG 299
Query 357 CTTCACTTCCCTAATTGGCTCCCTGAGAACAGTAAAGGTCGACAAGGAGGAAGAATGCCC 416
|||||||| |||||||||||||||||||||||||| |||| |||||||||| |||||| |
Sbjct 300 CTTCACTTACCTAATTGGCTCCCTGAGAACAGTAAGGGTCCACAAGGAGGACGAATGCTC 359
Query 417 TTAGGAGCAGCTACGGTTGTggaggaggaagaggaggaggaggaAGCGGTGCCTAGTATG 476
| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 360 TCAGGAGCAGCTATGGTTGCAGAGGAGGAAGAGGAGGAGGAGGAAGTGGTGCCTAGTATG 419
Query 477 TCAGTATCGCCGCCGGATAGTGTAACGTCGTCGTTTCAATTGGACTTTGGGATTAAAAGT 536
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 420 TCAGTATCGCCGCCGGATAGCGTAACGTCGTCGTTTCAATTGGACTTTGGGATCAAAAGT 479
Query 537 TATGGTTATGAGAGAAGAAGCAATAAGAGAGATATTGATGATGAAGTGGAGAGATCAGCT 596
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 TATGGTTACGAGAGAAGAAGCAATAAGAGAGATATTGATGATGAAGTGGAGAGATCTGCT 539
Query 597 TCAAGAGCCAGCAACGAAGACAACGATGACGAGAATGGATCCACTAGGAAGAAACTTAGA 656
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 540 TCAAGAGCCAGCAATGAAGACAACGATGAAGAAAATGGATCCACTAGGAAGAAACTTAGA 599
Query 657 CTCTCCAAAGACCAATCTGCTTTTCTTGAAGACAGCTTCAAAGAACACAGTACCCTTAAT 716
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 600 CTCTCTAAAGACCAATCTGCTTTTCTTGAAGACAGTTTCAAAGAACACAGTACCCTTAAT 659
Query 717 CCTAAACAGAAGATTGCATTGGCGAAGCAGTTGAATCTTCGTCCTCGTCAGGTTGAAGTC 776
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 CCTAAACAGAAGATTGCGTTGGCAAAGCAGTTGAATCTTCGTCCTCGTCAGGTTGAAGTT 719
Query 777 TGGTTTCAAAACAGACGAGCCAGGACAAAGCTGAAGCAAACGGAAGTGGACTGTGAATAC 836
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 TGGTTTCAAAACAGACGAGCCAGGACAAAACTGAAGCAAACGGAAGTGGACTGTGAATAC 779
Query 837 CTAAAGAGATGCTGTGAGTCACTAACCGAAGAAAACCGGAGGCTTCAAAAAGAGGTTAAA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTAAAGAGATGCTGTGAGTCACTAACCGAAGAAAACCGGAGGCTTCAAAAAGAGGTTAAA 839
Query 897 GAATTGAGAACCTTGAAGACTTCCACACCCTTTTACATGCAACTTCCGGCCACTACTCTC 956
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 840 GAATTGAGAACCTTGAAGACTTCCACACCCTTCTACATGCAACTTCCGGCCACAACTCTC 899
Query 957 ACTATGTGCCCTTCTTGTGAACGTGTTGCCACTTCAGCAGCACAGCCCTCCACGTCAGCT 1016
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 900 ACTATGTGCCCTTCTTGCGAACGTGTTGCCACTTCAGCAGCACAGCCGGCCACGTCAGCT 959
Query 1017 GCCCACAACCTCTGTTTGTCCACGTCATCATTGATTCCGGTTAAGCCTCGGCCGGC-CAA 1075
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 960 GCCCACAACCTCGGTTTGTCCACGTCATCATTGATTCCGGTTAAGCATCGGCCGGTACAA 1019
Query 1076 ACAAGTTTCATGAAAGCAC 1094
|||||| ||||||||||||
Sbjct 1020 ACAAGTCTCATGAAAGCAC 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49674160851
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5