BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06720.1
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487484 jgi|Araly1|487484|fgenesh2_kg.6__618__AT5G06720.1 1655 0.0
> Ahg487484 jgi|Araly1|487484|fgenesh2_kg.6__618__AT5G06720.1
Length=1213
Score = 1655 bits (896), Expect = 0.0
Identities = 1031/1097 (94%), Gaps = 5/1097 (0%)
Strand=Plus/Plus
Query 1 ATGATCAGTCAAGAAATACGCGTTTAATCGACTTTTTCTCTCTATATATACAATTCTTTC 60
||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||
Sbjct 1 ATGATCAGTCAAGAAATACGCGTTTAATCAACTTTTCCTCTCTATATATACAATTATTTC 60
Query 61 AAAATGATCAAACATAGTCATAAGTTCCGCACCAATCAGTGGAAATAACTAATCAAAACT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAATGATCAAGCATAGTCATAAGTTCCGCACCAATCAGTGGAAATAACTAATCAAAACT 120
Query 121 CTGTATCATCGTTTT-CAAAACCTAATTAATGGCTGTAACAAATCTTCCTACTTGTGATG 179
|| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTATATCATGGTTTTCCAAAACCTAATTAATGGCTGTAACAAATCTTCCTACTTGTGATG 180
Query 180 GTTTGTTCATTATCAGTCTTATTGTCATCGTTTCTTCAATATTTGGGACATCATCTGCGC 239
|||||||||| ||| |||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 181 GTTTGTTCATCATCGGTCTTATTGTTATCGTTTCTTCAATGTTTAGGACATCATCTGCGC 240
Query 240 AACTAAACGCAACATTTTACTCTGGGACTTGTCCC-AACGCCTCTGCCATCGTACG-CAG 297
||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| | |
Sbjct 241 AACTAAACGCAACGTTTTACTCTGGGACTTG-CCCTAACGCCTCTGCCATCGTACGTC-G 298
Query 298 CACTATTCAGCAAGCTCTTCAATCCGATACAAGAATCGGAGCCAGCCTCATCCGCCTTCA 357
|||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||
Sbjct 299 CACTATTCAGCAAGCTCTTCAATCTGATGCAAGAATTGGAGCCAGCCTAATCCGCCTTCA 358
Query 358 TTTTCATGACTGTTTTGTTAATGGATGTGATGCATCGATCTTGCTTGACGACACTGGAAG 417
|||||| || || ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 359 TTTTCACGATTGCTTTGTTAATGGCTGTGATGCATCGATCTTGCTTGACGACAGTGGAAG 418
Query 418 CATCCAGAGCGAGAAGAACGCTGGTCCGAATGTAAACTCAGCTAGAGGATTCAACGTTGT 477
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 419 CATCCAGAGCGAGAAGAACGCTGGTCCGAATGCAAACTCAGCTAGAGGGTTCAACGTTGT 478
Query 478 TGATAATATCAAGACTGCCCTCGAAAACGCTTGCCCTGGTGTTGTCTCTTGCTCTGACGT 537
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGATAATATCAAGACTGCCCTTGAAAACGCTTGCCCTGGTGTTGTCTCTTGCTCTGACGT 538
Query 538 TTTAGCCCTTGCCTCTGAGGCTTCTGTGTCTTTGGCAGGAGGGCCATCATGGACTGTATT 597
|||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 539 TTTAGCTCTTGCCTCAGAGGCCTCTGTATCTTTGGCAGGAGGGCCATCATGGACTGTATT 598
Query 598 ATTAGGAAGAAGAGATAGTCTCACGGCCAACCTCGCCGGTGCAAATTCGTCCATTCCTTC 657
|||||||||||||||| ||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 599 ATTAGGAAGAAGAGATGGTCTCACTGCAAACCTAGCCGGGGCAAATTCGTCCATTCCTTC 658
Query 658 TCCCATCGAAAGCCTAAGCAACATCACATTTAAATTTTCGGCTGTCGGGCTTAATACAAA 717
||| ||||||| || ||||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 659 TCCGGTCGAAAGTCTTAGCAACATCACATCTAAATTTTCGGCTGTCGGGCTAAATATGAA 718
Query 718 CGATCTGGTAGCCTTATCTGGTGCGCATACGTTCGGGCGTGCTCGATGTGGAGTATTCAA 777
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 719 CGATCTAGTTGCCTTATCTGGTGCGCATACGTTCGGGCGTGCTCGATGTGGAGTCTTCAA 778
Query 778 CAACAGACTATTTAACTTCAGCGGGACAGGAAATCCCGATCCAACTCTAAACTCAACGCT 837
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 779 CAACAGACTATTTAACTTCAGCGGGACAGGAAATCCCGACCCGACTCTAAACTCAACGCT 838
Query 838 TCTGAGCACTCTTCAACAGCTATGTCCTCAAAACGGTAGCGCATCAACGATCACCAATCT 897
||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 839 TCTCAGCACTCTTCAACAGCTATGTCCTCAAAACGGCAGCGTATCAACGATCACCAATCT 898
Query 898 TGATTTGAGCACACCAGATGCGTTCGATAACAATTACTTCGCCAACCTTCAGAGCAACGA 957
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 899 CGATCGGAGCACACCAGATGCGTTCGATAACAATTACTTCACCAACCTTCAGAGCAACAA 958
Query 958 TGGACTTCTTCAGTCAGACCAAGAGCTGTTCTCTACCACCGGTTCATCCACCATCGCGAT 1017
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 959 TGGGCTTCTTCAGTCAGACCAAGAGCTATTCTCTACCACCGGTTCATCCACCATCGCGAT 1018
Query 1018 TGTTACTTCGTTCGCAAGTAACCAGACTCTGTTTTTTCAGGCCTTTGCACAGTCCATGAT 1077
||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1019 TGTTACTTCATTTGCAAGTAACCAGACTCTGTTTTTTCAGGCCTTTGCTCAGTCCATGAT 1078
Query 1078 CAATATGGGGAATATTA 1094
||| |||||||||||||
Sbjct 1079 CAACATGGGGAATATTA 1095
Score = 189 bits (102), Expect = 4e-47
Identities = 116/122 (95%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 1127 TTAGACTGTAAGAAGGTTAATGGAAGTTGATTTCCTTAAAGCTCATTTTCTTTGAAAAAA 1186
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1093 TTA-ACTGTAAGAAGGTTAATGGAAGTTGATTTCCTTAAAGCTCCTTTTCTTTGAAAAAA 1151
Query 1187 C--ATTGGCAAGCTTTGGTTGAATAATTTTTGTTATCATAATCACATCAAATCTGTATTG 1244
| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1152 CATATTGGCAATCTTTGGTTGAATAATTTTTGTTATCATAATCACATCAAATATGTATTG 1211
Query 1245 CA 1246
||
Sbjct 1212 CA 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48721087926
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5