BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06740.1
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892601 jgi|Araly1|892601|Al_scaffold_0006_597 3053 0.0
Ahg900529 jgi|Araly1|900529|Al_scaffold_0004_1179 2109 0.0
> Ahg892601 jgi|Araly1|892601|Al_scaffold_0006_597
Length=1965
Score = 3053 bits (1653), Expect = 0.0
Identities = 1865/1968 (95%), Gaps = 12/1968 (1%)
Strand=Plus/Plus
Query 1 ATGAGATTTTCTCTTGCGTGGAAGCTCCTGTTCTTGA---T-ACTA-A-CTTGTAAGATC 54
||||||||||||||||||||||||||||||||||||| | |||| | |||||||| ||
Sbjct 1 ATGAGATTTTCTCTTGCGTGGAAGCTCCTGTTCTTGATTCTAACTATAGCTTGTAAGCTC 60
Query 55 GAGACACAAGTGAAGTGCTTAAAGTTCGATTTCCCTGGGTTTAATGTGAGCAATGAACTG 114
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 61 GAGACACAAGTGAAGTGCTTAGAGTTCAATTTCCCTGGGTTTAATGTGAGCAATGATCTG 120
Query 115 GAATTGATCCGAGATAACTCATACATTGTCTTTGGAGCAATCCAAGTGACTCCTGATGTT 174
|| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 GACTTGATCCGAGACAACTCATACATTGTCCTTGGAGCAATCCAAGTGACTCCTGATGTT 180
Query 175 ACTGGTGGACCTGGTGGCACTATCGCAAACCAAGCAGGCAGAGCACTCTACAAAAAGCCT 234
| |||||| ||||||||| ||||||| |||||||| |||||||| || ||||| ||||||
Sbjct 181 AGTGGTGGGCCTGGTGGCTCTATCGCCAACCAAGCGGGCAGAGCTCTATACAATAAGCCT 240
Query 235 TTCAGGCTATGGAGCAAACACAAGAGTGCTACTTTCAACACCACTTTCGTTATTAACATC 294
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TTCAGGCTATGGAGCAAAGACAAGAATGCTACTTTCAACACCACTTTCGTTATTAACATC 300
Query 295 TCTAACAAAACCGATCCCGGAGGCGAAGGCTTAGCTTTCGTTCTCACACCCGAGGAGACT 354
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 TCGAACAAAACCGATCCCGGAGGCGAAGGCTTAGCTTTCGTTCTCACACCCGAGAAGACC 360
Query 355 GCTCCTCAGAACAGCTCAGGTATGTGGCTCGGTATGGTCAACGAAAGAACAAATAGGAAT 414
||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| | || |
Sbjct 361 GCTCCTCAGAACAGCTCAGGTATGTGGCTCGGTCTGGTCAATGAAAGGACAAACATGACT 420
Query 415 AAT-GAGTCGAGGATCGTTTCGGTTGAGTTCGACACAAGGAAGAGTCATTCGGATGATCT 473
| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| |
Sbjct 421 -CTCGAGTCGAGGATCGTTTCTGTTGAGTTCGACACAAGGAAGAGCCATCCGGATGATAT 479
Query 474 TGATGGAAACCATGTGGCTCTAAATGTGAACAACATCAATTCGGTTGTTCAAGAATCCTT 533
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 TGATGGAAACCATGTGGCTCTAAATGTGAACAACATCAATTCTGTTGTTCAAGAATCCTT 539
Query 534 GAGCGGTCGAGGGATCAAGATCGATTCCGGACTTGACTTAACCGCACATGTGCGGTATGA 593
||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 540 GAGTGGTCGAGGGATCAAGATCGATTCCGGAGTTGACTTAACCGCTCATGTGCGGTATGA 599
Query 594 TGGTAAGAATCTATCGGTTTATGTCTCAAGAAACTTGGATGTGTTTGAACAGAGGAACTT 653
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 600 TGGTAAGAATCTATCGGTTTATGTCTCTAGAAACTTGGAGGTGTTTGAACAGAGGAACTT 659
Query 654 AGTGTTTTCTAGGGCTATAGATCTCTCAGCCTATCTTCCGGAGACAGTTTATGTTGGATT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGTGTTTTCTAGGGCTATAGATCTCTCAGCCTATCTTCCGGAGACAGTTTATGTTGGATT 719
Query 714 TACAGCTTCAACAAGCAATTTCACGGAGCTGAATTGTGTGAGATCATGGAGTTTTGAAGG 773
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 TACCGCTTCAACAAGCAATTTCACGGAGCTGAATTGTGTGAGATCATGGAGGTTTGAAGG 779
Query 774 TTTAAAGATCGATGGCGATGGAAACATGTTATGGCTCTGGATCACTATCCCTATAGTGTT 833
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTCAGAGATCGATGGCGATGGAAACATGTTATGGCTCTGGATCACTATCCCTATAGTGTT 839
Query 834 TATTGTTGGT-ATAGGAGCTTTCTTAGGAGCATTGTACTTGAGATCTAGGTCAAAGGCAG 892
| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 TCTTGTT-GTAATAGGAGCTTTCTTAGGGGCATTGTACTTGAGATCTAGGTCAAAGGCAG 898
Query 893 GGGAAACAAATCCGGATATAGAAGCTGAGCTAGATAATTGCGCTGCAAATCCGCAGAAGT 952
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 GGGAAACAAATCCGGATATAGAAGCTGAGCTAGATAATTGCGCTGCAAACCCGCAGAAGT 958
Query 953 TCAAGCTGAGAGAGCTAAAGAGAGCAACAGGAAACTTCGGCGCGGAGAATAAACTAGGGC 1012
|||||||||||||||| |||||||||||||| |||||||||| |||||| ||||| ||||
Sbjct 959 TCAAGCTGAGAGAGCTGAAGAGAGCAACAGGGAACTTCGGCGTGGAGAACAAACTCGGGC 1018
Query 1013 AAGGCGGGTTTGGGATGGTGTTTAAAGGGAAATGGCAGGGTAGAGACATAGCTGTGAAAC 1072
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 AAGGCGGGTTTGGGATGGTGTTTAAGGGGAAATGGCAGGGTAGAGACATAGCTGTGAAAC 1078
Query 1073 GAGTTTCCGAGAAATCGCATCAAGGGAAGCAAGAGTTTATAGCCGAGATCACAACTATTG 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1079 GAGTTTCCGAGAAATCGCATCAAGGGAAGCAAGAGTTTATAGCCGAGATCACAACGATCG 1138
Query 1133 GTAATCTGAATCATAGGAACCTGGTGAAGTTATTGGGATGGTGCTACGAGAGGAAGGAGT 1192
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 1139 GTAATCTGAATCATAGGAACCTGGTTAAATTATTGGGATGGTGCTACGAGAGAAAGGAGT 1198
Query 1193 ATCTTCTGGTTTATGAGTATATGCCTAACGGAAGCTTGGACAAATATCTTTTCTTGGAAG 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATCTTCTGGTTTATGAGTATATGCCTAACGGAAGCTTGGACAAATATCTTTTCTTGGAAG 1258
Query 1253 ACAAGTCAAGATCAAACCTAACATGGGAGACAAGGAAGAACATTATAACAGGGCTATCTC 1312
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1259 ATAAGTCAAGATCAAACCTAACATGGGAGACAAGGAAGAACATCATAACAGGGCTATCTC 1318
Query 1313 AAGCTTTGGAGTATCTTCACAATGGATGTGAGAAGAGGATACTTCACAGAGACATAAAAG 1372
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1319 AAGCTTTGGAGTATCTTCACAATGGATGTGAGAAGAGGATACTTCACAGAGACATAAAGG 1378
Query 1373 CAAGCAACGTAATGCTGGACTCCGACTTCAACGCAAAGCTCGGCGACTTCGGGCTTGCGA 1432
|||||||||||||||| ||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 1379 CAAGCAACGTAATGCTAGACTCGGATTTCAACGCCAAGCTCGGCGATTTCGGGCTTGCGA 1438
Query 1433 GGATGATTCAGCAAAGCGAAATGACACATCATTCGACCAAGGAGATCGCTGGAACACC-G 1491
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |
Sbjct 1439 GGATGATTCAGCAAAGCGAAATGACACACCATTCAACCAAGGAGATCGCTGGGACACCTG 1498
Query 1492 GGATACATGGCTCCTGAGACTTTTCTCAACGGGAGAGCCACAGTTGAAACAGATGTGTAT 1551
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GG-TACATGGCTCCGGAGACTTTTCTCAACGGGAGAGCCACAGTTGAAACAGATGTGTAT 1557
Query 1552 GCGTTCGGAGTTCTAATGCTTGAAGTAGTCTCGGGGAAGAAACCAAGCTATGTCTTGGTC 1611
||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 1558 GCGTTTGGAGTTCTAATGCTCGAAGTAGTCTCAGGGAAGAAACCTTGCTATGTCTTGGTC 1617
Query 1612 AAAGACAACCAGAACAATTACAACAATAGCATTGTGAATTGGCTATGGGAGCTATACAGA 1671
|| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AAGGAGAACCAGAGCAATTACAACAATAGCATTGTGAATTGGCTATGGGAGCTATACAGA 1677
Query 1672 AATGGAACCATCACGGATGCTGCCGATCCGGGAATGGGAAATTTGTTCGATAAAGAAGAA 1731
|||| |||||||| |||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 1678 AATGAAACCATCATGGATGCAGCGGATCCGGGAATGGGAAGTTTGTTCGATAAAGAAGAA 1737
Query 1732 ATGAAAAGCGTTTTGCTCTTAGGACTAGCTTGCTGCCACCCGAATCCGAACCAAAGACCG 1791
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1738 ATGAAAAGTGTTTTGCTCTTAGGACTCGCTTGCTGCCACCCGAATCCGAACCAAAGACCC 1797
Query 1792 TCCATGAAAACAGTGTTGAAGGTCTTGACGGGTGAGACTAGCCCACCGGATGTTCCTACA 1851
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1798 TCCATGAAAACGGTTTTGAAGGTCTTGACGGGTGAGACTAGCCCACCCGATGTTCCTACA 1857
Query 1852 GAGAGACCAGCTTTCGTGTGGCCAGCGATGCCTCCATCTTTCAGTGACATTGACTACTCT 1911
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1858 GAGAGACCGGCTTTCGTGTGGCCAGCAATGCCTCCATCTTTCAGTGACATTGACTACTCT 1917
Query 1912 CTTACAGGGAGTCAGATCAATTCACTTACGGAGCTTACTGGCAGATGA 1959
||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct 1918 CTTACAGGGAGTCAGATCAATTCCCTTACCGAGCTTACTGGCCGATGA 1965
> Ahg900529 jgi|Araly1|900529|Al_scaffold_0004_1179
Length=1950
Score = 2109 bits (1142), Expect = 0.0
Identities = 1718/1988 (86%), Gaps = 71/1988 (4%)
Strand=Plus/Plus
Query 1 ATGAGATTTTCTCTTGCGTGGAAGCTCCTGTTCTTGA---T-AC--TAACTTGTAAGATC 54
|||| || ||||| |||||| |||||||||||||||| | || ||||||||||||||
Sbjct 1 ATGAAATATTCTCCTGCGTGCAAGCTCCTGTTCTTGATTCTAACTATAACTTGTAAGATC 60
Query 55 GAGACACAAGTGAAGTGCTTAAAGTTCGATTTCCCTGGGTTTAATGTGAGCAAT-GAACT 113
|| ||||||||||||||| | |||||| ||||| || |||||| | | | | | |||||
Sbjct 61 GAAACACAAGTGAAGTGCATGAAGTTCAATTTCTCTAAGTTTAACG-GTG-ATTCGAACT 118
Query 114 GGAATTGATCCGAGA-TAACTCATACATTGTC-TTTGGAGCAATCCAAGTGACTCCTGAT 171
| | || | | | | |||| |||||| | |||| |||| ||||||||||||||||
Sbjct 119 TG---T-AT-CTAAACT-ACTCCGACATTG-CTTTTGAAGCACTCCAAGTGACTCCTGAA 171
Query 172 GTTACTGGTGGACCTGGTGGCACTATCGCAAACCAAGCAGGCAGA-GCAC--TCTACAAA 228
| || |||| || | | ||||| | |||| | || || |||| |||||||
Sbjct 172 G---CTCGTGG---TGCT--C-CTATCACGAACCTCTC-GG--GACGCACGGTCTACAAG 219
Query 229 AAGCC-TTTCAGGCTATGGAGCAAACACAAG-AGTGCTACTTTCAACACCACTTTCGTTA 286
| || ||||||||||||||| ||| |||| | | ||||||| ||||||||||||||||
Sbjct 220 GA-CCGTTTCAGGCTATGGAGAAAAGGCAAGAAAT-CTACTTTTAACACCACTTTCGTTA 277
Query 287 TTAACATCTCTAACAAAACCG-ATCCCGGAGGCGAAGGCTTAG-CTTTCGTTCTCACACC 344
|||||||| ||| |||||| || |||||||||||||||| |||| |||||||||||
Sbjct 278 TTAACATCAAGAACCAAACCGAAT-TTGGAGGCGAAGGCTTAGCCTTT-GTTCTCACACC 335
Query 345 CGAGGAG-ACTGCTCCTCAGAACAGCTCAGGTATGTGGCTCGG-TATGGTCAACGAAAGA 402
||| || || | |||||| |||||||| |||||||||||||| | || | ||||||||
Sbjct 336 TGAGAAGAAC-GTTCCTCAAAACAGCTCGGGTATGTGGCTCGGCT-TGATGAACGAAAGG 393
Query 403 ACAAATAGGAATAATGAGTCGAGGATCGTTTCGGTTGAGTTCGACACAAGGAAGAGTCAT 462
|||||| ||| | ||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct 394 ACAAATGGGACTCGCGAGTCGAGGATTGTTGCGGTTGAGTTCGACACAAGGAAGAGCCAT 453
Query 463 TCGGATGATCTTGATGGAAACCATGTGGCTCTAAATGTGAACAACATCAATTCGGTTGTT 522
| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 454 CCTGATGATCTTGATGGAAACCATGTGGGTCTAAATGTGAACAACATAAATTCGGTTGTT 513
Query 523 CAAGAATCCTTGAGCGGTCGAGGGATCAAGATCGATTCC-GGACTTGACTTAACCGCACA 581
|||||||| |||||| |||||||||||| |||| ||||| | | |||| || ||||||||
Sbjct 514 CAAGAATCGTTGAGCAGTCGAGGGATCACGATCAATTCCAGTA-TTGATTTTACCGCACA 572
Query 582 TGTGCGGTATGATGGTAAGAATCTATCGGTTTATGTCTCAAGAAACTTGGATGTGTTTGA 641
||| |||||||||||||||||||| ||||| ||||||||||||||| |||| || |||
Sbjct 573 TGTACGGTATGATGGTAAGAATCTTTCGGTATATGTCTCAAGAAACCTGGAGGTACATGA 632
Query 642 ACAGAGGAACTTAGTGTTTTCTAGGGCTATAGATCTCTCAGCCTATCTTCCGGAGACA-G 700
||| | ||||| ||||||||| || |||||||||| |||||||||||||| |||| | |
Sbjct 633 TCAGCGAAACTTGGTGTTTTCTTGGCCTATAGATCTATCAGCCTATCTTCCAGAGA-ATG 691
Query 701 TTTATGTTGGATTTACAGCTTCAACAAGCAATTTCACGGAGCTGAATTGTGTGAGATCAT 760
|||| |||||||||| |||||||||||| |||| ||| | ||||||||||||| |||||
Sbjct 692 TTTACATTGGATTTACGGCTTCAACAAGCGATTTTACGCAACTGAATTGTGTGAAATCAT 751
Query 761 GGAGTTTTGAAGGTTTAAAGATCGATGGCGAT-GGAA-ACAT-GTTATGG--C-TCTGGA 814
||||||||||||||||| || ||||||| ||| | || | || ||| ||| | | ||||
Sbjct 752 GGAGTTTTGAAGGTTTAGAGGTCGATGGAGATCGAAATATATGGTTGTGGTCCTTGTGGA 811
Query 815 TCACTATCCCTA-TAGTGTTTATTGTTGGT-ATAGGAGCTTTCTTAGGAGCATTGTACTT 872
||| || ||||| | |||| | |||| || ||||||||||||||| | | | | |||||
Sbjct 812 TCATTACCCCTACT-GTGTGTGCTGTT-GTAATAGGAGCTTTCTTATGTGGACTATACTT 869
Query 873 GAGATCTAGGTCAAAGGCAGGGGAAACAAATCCGGATATAGAAGCTGAGCTAGATAATTG 932
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 870 AAGATCTAGGTCAAAGGCCGGGGAAACAAATCCGGATATAGAAGCTGAGCTAGATAATTG 929
Query 933 CGCTGCAAATCCGCAGAAGTTCAAGCTGAGAGAGCTAAAGAGAGCAACAGGAAACTTCGG 992
|| |||| | ||||||||||||||||| |||||||| ||||||||||| ||||||||| |
Sbjct 930 CGGTGCACACCCGCAGAAGTTCAAGCTAAGAGAGCTGAAGAGAGCAACGGGAAACTTCAG 989
Query 993 CGCGGAGAATAAACTAGGGCAAGGCGGGTTTGGGATGGTGTTTAAAGGGAAATGGCAGGG 1052
|| |||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 990 CGTGGAGAACAAACTCGGGCAAGGCGGGTTTGGGATGGTGTTTAAGGGGAAGTGGGAGGG 1049
Query 1053 TAGAGACATAGCTGTGAAACGAGTTTCCGAGAAATCGCATCAAGGGAAGCAAGAGTTTAT 1112
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1050 TAGAGATATAGCTGTGAAACGAGTTTCCGAGAAATCGCGTCAAGGGAAGCAAGAGTTCAT 1109
Query 1113 AGCCGAGATCACAACTATTGGTAATCTGAATCATAGGAACCTGGTGAAGTTATTGGGATG 1172
| ||||||||| ||| || |||||||||||||||| |||| |||||||||||||||||||
Sbjct 1110 ATCCGAGATCAAAACGATCGGTAATCTGAATCATAAGAACTTGGTGAAGTTATTGGGATG 1169
Query 1173 GTGCTACGAGAGGAAGGAGTATCTTCTGGTTTATGAGTATATGCCTAACGGAAGCTTGGA 1232
|||||||||||| ||||||| |||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1170 GTGCTACGAGAGAAAGGAGTTTCTTCTGGTTTACGAGTACATGCCGAACGGAAGCTTGGA 1229
Query 1233 CAAATATCTTTTCTTGGAAGACAAGTCAAGATCAAACCTAACATGGGAGACAAGGAAGA- 1291
|| |||| ||||| |||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct 1230 CAGATATGTTTTCGTGGAAGACAAGTCAAGTTCAAACCTAAAATGGGAGACAAGGAA-AC 1288
Query 1292 ACATTATAACAGGGCTATCTCAAGCTTTGGAGTATCTTCACAATGGATGTGAGAAGAGGA 1351
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 ACATTATAAGAGGGATATCTCAAGCTTTGGAGTATCTTCACAATGGATGTGAGAAGAGGA 1348
Query 1352 TACTTCACAGAGACATAAAAGCAAGCAACGTAATGCTGGACTCCGACTTCAACGCAAAGC 1411
||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1349 TACTTCATAGAGACATAAAAGCAAGCAACGTAATGCTGGACTCGGATTTCAACGCAAAGC 1408
Query 1412 TCGGCGACTTCGGGCTTGCGAGGATGATTCAGCAAAGCGAAATGACACATCATTCGACCA 1471
| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1409 TTGGCGATTTCGGGCTTGCGAGGATGATTCAGCAAAGCGAAATGACACACCATTCGACAA 1468
Query 1472 AGGAGATCGCTGGAACACCGGGATACATGGCTCCTGAGACTTTTCTCAACGGGAGAGCCA 1531
| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1469 ATGAGATTGCTGGAACACCGGGATACATGGCTCCCGAGACTTTTCTCAACGGGAGAGCTA 1528
Query 1532 CAGTTGAAACAGATGTGTATGCGTTCGGAGTTCTAATGCTTGAAGTAGTCTCGGGGAAGA 1591
| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 1529 CGGTTGAAACGGATGTGTATGCATTCGGAGTTCTAATGCTCGAAGTAGTCTCCGGGAAGA 1588
Query 1592 AACCAAGCTATGTCTTGGTCAAAG-ACAACCAGAACAATTACAACAATAGCATTGTGAAT 1650
||| || ||||||||||| |||| | ||| ||| ||||||||| |||||||||||||||
Sbjct 1589 AACTGAGTTATGTCTTGGT-AAAGGAGAACGAGAGCAATTACAAGAATAGCATTGTGAAT 1647
Query 1651 TGGCTATGGGAGCTATACAGAAATGGAACCATCACGGATGCTGCCGATCCGGGAATGGGA 1710
|||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||||||
Sbjct 1648 TGGCTATGGGAGCTATACAGAAATGGAACCATAATGGATGCTGCGGATCCAAGAATGGGA 1707
Query 1711 AATTTGTTCGATAAAGAAGAAATGAAAAGCGTTTTGCTCTTAGGACTAGCTTGCTGCCAC 1770
| |||||| ||| ||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 1708 AGTTTGTTTGATGAAGAAGAGATGAAAAGCGTTTTGCTCTTAGGACTCGCTTGTTGCCAC 1767
Query 1771 CCGAATCCGAACCAAAGACCGTCCATGAAAACAGTGTTGAAGGTCTTGACGGGTGAGACT 1830
|| |||||||||| |||||| ||||||||||| || |||||||||||||||||||| |||
Sbjct 1768 CCAAATCCGAACCTAAGACCTTCCATGAAAACTGTTTTGAAGGTCTTGACGGGTGAAACT 1827
Query 1831 AGCCCACCGGATGTTCCTACAGAGAGACCAGCTTTCGTGTGGCCAGCGATGCCTCCATCT 1890
|||||||| ||||| |||||||||||||| |||||||| ||||||| ||||||||||||
Sbjct 1828 AGCCCACCCGATGTGCCTACAGAGAGACCGGCTTTCGTATGGCCAGTAATGCCTCCATCT 1887
Query 1891 TTCAGTGACATTGACTACTCTCTTACAGGGAGTCAG-ATCAATTCACTTACGGAGCTTAC 1949
|| ||| |||||||||||||||||||||| ||| | || || || || |||||||
Sbjct 1888 TTTGGTGTTGTTGACTACTCTCTTACAGGGAGCCAGGA-CA-TT-AC---CG-AGCTTAC 1940
Query 1950 TGGCAGAT 1957
|||| |||
Sbjct 1941 TGGCCGAT 1948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5