BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06750.1
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487487 jgi|Araly1|487487|fgenesh2_kg.6__621__AT5G06750.1 2156 0.0
> Ahg487487 jgi|Araly1|487487|fgenesh2_kg.6__621__AT5G06750.1
Length=1478
Score = 2156 bits (1167), Expect = 0.0
Identities = 1285/1341 (96%), Gaps = 12/1341 (1%)
Strand=Plus/Plus
Query 126 TTTTTGTTTTCGCAATCTCCGATTCGTTAACTCGTTTTCTCTCTTCACCTGTTTCAAGCT 185
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 TTTTTTTTTTCTCAATCTCCGATTCGTTAACTCGTTTTCTCTCTTCACCTGTTTCAAGCT 124
Query 186 TTTCGATCCAACAAATCACGAGATTCCTCTTTCCGGTGTGGTCTCCGGCGACCTAAAATA 245
|||||||||||||||||||||||||| |||||||||| |||||||||||||||| || |
Sbjct 125 TTTCGATCCAACAAATCACGAGATTCATCTTTCCGGTCTGGTCTCCGGCGACCT--AA-A 181
Query 246 AAGAGTTAATTCTCGTGGTCGTGGAGAGCAAATGAGGGATGTTCTCCTGGTTAGCGAGAA 305
||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AAGAGTTTATTCTCGT-G--GTGGAGAGCAAATGAGGGATGTTCTCCTGGTTAGCGAGAA 238
Query 306 TGGCTCTTTTTTGTTTACGACCTATGCGGCGATACGGTCGTATGAACAGAGATGATGACG 365
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 239 TGGCTCTTTTTTGTTTACGACCTATGCGTCGATACGGCCGTATGAACAGAGATGAT---G 295
Query 366 ATGATGATGATCACGACGGTGACTCTTCTTCCTCCGGTGACTCCCTTCTTTGGTCTAGAG 425
||||||||||||| |||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 296 ATGATGATGATCATGACGGTGA--C-TCTTCCTCCGGTGACTCGCTTCTTTGGTCTAGAG 352
Query 426 AACTCGAGAGACATTCTTTCGGAGATTTCTCTATTGCTGTTGTGCAAGCTAACGAGGTTA 485
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 353 AACTCGAGAGACATTCTTTCGGACATTTCTCTATTGCTGTTGTGCAAGCTAACGAGGTTA 412
Query 486 TTGAAGATCATAGTCAAGTCGAGACTGGAAACGGTGCCGTTTTCGTCGGAGTTTACGATG 545
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 413 TTGAAGATCATAGTCAAGTCGAGACCGGAAACGGTGCCGTTTTTGTCGGAGTCTACGATG 472
Query 546 GTCATGGTGGTCCTGAAGCTTCTAGATACATCTCTGATCATCTCTTTTCTCATTTGATGA 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GTCATGGTGGTCCTGAAGCTTCTAGATACATCTCTGATCATCTCTTTTCTCATTTGATGA 532
Query 606 GAGTTTCGAGAGAAAGGAGTTGTATTTCAGAGGAGGCTTTAAGAGCTGCATTTTCTGCTA 665
||||||||||||||||||||| ||| ||||||||| || | |||||||| ||||||||||
Sbjct 533 GAGTTTCGAGAGAAAGGAGTTCTATCTCAGAGGAGACTCTGAGAGCTGCTTTTTCTGCTA 592
Query 666 CTGAGGAAGGGTTTCTCACGCTTGTGCGAAGGACTTGCGGGTTGAAACCGTTGATTGCAG 725
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 593 CAGAGGAAGGGTTTCTCACGCTTGTGCGAAGGACTTGCGGGTTAAAACCGTTGATTGCAG 652
Query 726 CTGTTGGATCTTGTTGTTTGGTTGGAGTTATTTGGAAAGGGACTTTGCTTATCGCTAATG 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CTGTTGGATCTTGTTGTTTGGTTGGAGTTATTTGGAAAGGGACTTTGCTTATCGCTAATG 712
Query 786 TTGGTGATTCTCGTGCTGTGCTTGGTTCCATGGGTAGTAATAATAATAGGTCAAACAAGA 845
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 713 TTGGTGATTCTCGTGCTGTGCTTGGTTCCATGGGTAGTAATAATAGTAGGTCAAACAAGA 772
Query 846 TTGTAGCTGAGCAACTGACTAGTGATCACAATGCTGCTTTGGAAGAAGTTAGACAAGAGC 905
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTGTAGCTGAGCAATTGACAAGTGATCACAATGCTGCTTTGGAAGAAGTTAGACAAGAGG 832
Query 906 TTAGGTCGTTGCATCCTGATGATTCACATATCGTTGTCCTTAAACATGGTGTGTGGCGCA 965
|||||||||||||||| |||||| | ||||||||||| || |||||||||||||||||||
Sbjct 833 TTAGGTCGTTGCATCCGGATGATCCGCATATCGTTGTTCTCAAACATGGTGTGTGGCGCA 892
Query 966 TCAAAGGCATCATTCAGGTATCTAGATCAATAGGGGATGCATATTTAAAGCGCCCAGAGT 1025
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 893 TCAAAGGCATCATTCAGGTATCTAGATCAATAGGGGATGCATACTTAAAGCGCCCAGAGT 952
Query 1026 TCTCACTTGACCCTTCATTTCCGCGGTTCCATCTCGCTGAAGAACTACAAAGACCTGTTT 1085
|||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 953 TCTCTCTTGACCCTTCATTTCCGCGGTTCCATCTCGCTGAACAGCTACAAAGACCGGTTT 1012
Query 1086 TATCAGCAGAGCCTTGTGTCTACACAAGAGTCTTACAAACAAGTGACAAGTTTGTGATAT 1145
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TATCAGCAGAGCCTTCTGTCTACACAAGAGTCTTACAAACAAGTGACAAGTTTGTGATAT 1072
Query 1146 TCGCATCAGATGGACTCTGGGAACAAATGACCAACCAGCAAGCTGTAGAGATAGTGAATA 1205
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1073 TCGCATCAGATGGACTCTGGGAACAAATGACCAACCAGCAAGCTGTAGAAATAGTGAATA 1132
Query 1206 AACACCCCCGTCCTGGAATAGCGAGAAGGCTGGTGAGAAGAGCGATAACCATAGCTGCGA 1265
||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1133 AACACCCTCGTCCTGGAATAGCTCGAAGGCTGGTGAGAAGAGCGATGACCATAGCTGCGA 1192
Query 1266 AAAAGAGAGAGATGAATTACGATGATTTGAAGAAAGTGGAGAGAGGAGTGAGGAGATTCT 1325
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 AGAAGAGAGAGATGAATTACGATGATTTGAAGAAAGTGGAGAGAGGAGTGAGGAGATTCT 1252
Query 1326 TTCATGATGATATAACAGTGGTTGTGATATTCATAGACAATGAGCTTCTTATGGTGGAGA 1385
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TTCATGATGATATAACGGTGGTTGTGATATTCATAGACAATGAGCTTCTTATGGTGGAGA 1312
Query 1386 AAGCTACTGTTCCTGAATTGTCCATTAAAGGTTTTTCTCATACCGTTGGACCTTCCAAGT 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 AAGCTACTGTTCCTGAATTGTCCATTAAAGGTTTTTCTCATACCGTTGGACCTTCCAAGT 1372
Query 1446 TCAGTATCTTCCTCTCTTAGA 1466
||||||||||| |||||||||
Sbjct 1373 TCAGTATCTTCTTCTCTTAGA 1393
Score = 122 bits (66), Expect = 6e-27
Identities = 79/85 (93%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 1518 AAAAATGAACACGGATCGATTTTGTACCAACACGTTTGAGTTTAGATACAAAATTGTAGG 1577
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1394 AAAAATGAACACGGATCGATTTTGTACCAACACGTTTGATTTTAGATACAAAATTGTAGG 1453
Query 1578 TTAATAA-TCCTTGAACTGCTCATT 1601
| || || || |||||||| |||||
Sbjct 1454 TAAAAAAATCTTTGAACTGGTCATT 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60030226120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5