BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G06760.1

Length=856
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg325294 jgi|Araly1|325294|fgenesh1_pm.C_scaffold_6000514           688    0.0  


> Ahg325294 jgi|Araly1|325294|fgenesh1_pm.C_scaffold_6000514
Length=471

 Score =  688 bits (372),  Expect = 0.0
 Identities = 446/480 (93%), Gaps = 12/480 (3%)
 Strand=Plus/Plus

Query  118  ATGCAGTCGATGAAAGAAACAGCTTCGAATATTGCAGCTTCTGCAAAATCTGGCATGGAC  177
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    ATGCAGTCGATGAAAGAAACAGCTTCGAATATTTCAGCTTCTGCAAAATCTGGCATGGAC  60

Query  178  AAAACCAAAGCTACCTTGGAGGAAAAGGCGGAGAAGATGAAGACACGAGACCCTGTTCAG  237
            ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct  61   AAAACCAAAGCTACCTTGGAGGAAAAGGCTGAGAAGATGACGACACGAGACCCTGTTCAG  120

Query  238  AAACAGATGGCTACACAGGTTAAAGAAGATAAGATCAATCAAGCTGAGATGCAGAAGAGA  297
            |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  121  AAACGGATGGCTACACAGGTTAAAGAAGATAAGATCAATCAAGCCGAGATGCAGAAGAGA  180

Query  298  GAAACGCGTCAGCACAACGCGGCCATGAAAGAAGCGGCTGGAGCCGGAACCGGTTTAGGT  357
            ||||||||| || |||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct  181  GAAACGCGTGAGTACAACGCGGCCAGGAAAGAAGCGGCTGGAGCTGGAACCGGTTTAGGT  240

Query  358  TTGGGGACGGCCACTCACTCGACCACTGGACAAGTCGGACACGGCACTGGGACACATCAG  417
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  241  TTGGGGACGGCCACTCACTCGACCACTGGACAAGTCGGACACGGCACTGGGACACACCAG  300

Query  418  ATGTCGGCTCTGCCTGGTCACGGAACGGGACAACTGACCGACCGCGTTGTGGAGGGCACG  477
            ||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||| |||
Sbjct  301  ATGTCGGCTTTGCCTGGTCACGGAACAGGACAACTGACAGACCGGGTTGTGGAGGGTACG  360

Query  478  GCTGTGACCGACCCGATTGGAAGGAACACTGGAACTGGTCGGACAAC--C-GCTCATAAC  534
            ||||||||||||||||| |||||||||||||||| ||||||||||||  | |||||||||
Sbjct  361  GCTGTGACCGACCCGATCGGAAGGAACACTGGAAATGGTCGGACAACAACTGCTCATAAC  420

Query  535  ACTCACGTTGGTGGTGGTGGTGCCACCGGGTACGGAACCGGCGGGGGATATACTGGATAA  594
            || ||||| |||  ||||    ||   |  |||||||||||||||||||||| |||||||
Sbjct  421  ACCCACGTCGGTCCTGGT----CC---G--TACGGAACCGGCGGGGGATATAGTGGATAA  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31680144027


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5