BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06770.1
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325295 jgi|Araly1|325295|fgenesh1_pm.C_scaffold_6000515 1144 0.0
> Ahg325295 jgi|Araly1|325295|fgenesh1_pm.C_scaffold_6000515
Length=726
Score = 1144 bits (619), Expect = 0.0
Identities = 691/726 (95%), Gaps = 3/726 (0%)
Strand=Plus/Plus
Query 164 ATGGATGCTCGTAAGAGAGGACGCCCTGAAGCTGCTGCCTCTCACAACTCCAATGGCGGA 223
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGACGCTCGCAAGAGAGGACGCCCTGAAGCTGCTGCCTCACACAACTCCAATGGCGGA 60
Query 224 TTCAAGAGGTCTAAGCAAGAGATGGAATCAATTTCAACTGGTTTAGGAAGCAAATCCAAG 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCAAGAGGTCTAAGCAAGAGATGGAATCAATTTCAACTGGTTTAGGAAGCAAATCCAAG 120
Query 284 CCATGCACTAAATTTTTCAGCACTTCTGGATGTCCATTTGGTGACAATTGCCACTTCTTG 343
|||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||
Sbjct 121 CCATGCACTAAATTTTTCAGCACTTCTGGATGCCCCTTCGGTGACAATTGTCACTTCTTG 180
Query 344 CACTATGTGCCCGGTGGGTACAATGCTGCAGCGCAGATGACAAATCTCCGACCACCGGTT 403
|||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CACTATGTACCTGGTGGGTACAATGCTGCAGCGCAGATGACAAATCTCCGACCACCAGTT 240
Query 404 TCTCAAGTTTCCAGAAATATGCAAGGATCTGGTGGTCCCGGCGGCAGATTCTCAGGGAGA 463
|||||||||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 241 GCTCAAGTTTCGAGAAATATGCAAGGATCTGGTGGTGTGGGAGGCAGATTCTCAGGGAGA 300
Query 464 GGAGATCCAGGATCAGGCCCTGTTTCAATCTTTGGTGCTTCT---ACTTCCAAGATCAGT 520
|||||||||| || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GGAGATCCAGTATTAGGCCCTGTTTCAATCTTTGGTGCTTCTGCTACTTCCAAGATCAGT 360
Query 521 GTAGATGCTTCTTTAGCCGGTGCCATCATTGGAAAAGGTGGAATCCATTCCAAACAGATA 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTAGATGCTTCTTTAGCCGGTGCCATCATTGGAAAAGGTGGAATCCATTCCAAACAGATA 420
Query 581 TGCCGTGAAACAGGAGCAAAATTATCGATTAAAGATCATGAAAGAGACCCAAACTTGAAG 640
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGCCGTCAAACAGGAGCGAAATTATCGATTAAAGATCATGAAAGAGACCCAAACTTGAAG 480
Query 641 ATTATCGAGCTGGAAGGAACATTTGAACAGATCAATGTAGCGAGTGGGATGGTGAGAGAG 700
||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 ATTATTGAGCTAGAAGGAACATTTGAACAGATCAATATAGCGAGTGGGATGGTGAGAGAG 540
Query 701 CTTATAGGGAGGCTTGGATCAGTGAAGAAACCTCAAGGGATTGGTGGTCCTGAAGGGAAA 760
|| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 541 CTCATAGGGAGGCTTGGATCAGCCAAGAAACCTCAAGGGATTAGTGGTCCTGAAGGGAAA 600
Query 761 CCACATCCTGGGAGCAACTACAAAACCAAGATCTGTGATAGGTACTCTAAAGGGAACTGT 820
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 601 CCACATCCTGGGAGCAACTACAAGACCAAGATCTGTGACAGGTACTCTAAAGGGAACTGT 660
Query 821 ACATATGGAGATAGATGCCATTTTGCTCATGGTGAATCTGAGCTGCGCAGGTCAGGAATC 880
|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 661 ACATATGGAGATAGATGCCATTTTGCGCATGGTGAAGCCGAGCTGCGCAGGTCAGGAATC 720
Query 881 GCTTAG 886
||||||
Sbjct 721 GCTTAG 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744594115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5