BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06780.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487491 jgi|Araly1|487491|fgenesh2_kg.6__625__AT5G06780.1 2176 0.0
Ahg478573 jgi|Araly1|478573|fgenesh2_kg.3__1274__AT3G12140.3 444 1e-123
> Ahg487491 jgi|Araly1|487491|fgenesh2_kg.6__625__AT5G06780.1
Length=1504
Score = 2176 bits (1178), Expect = 0.0
Identities = 1409/1516 (93%), Gaps = 34/1516 (2%)
Strand=Plus/Plus
Query 1 AGGTttctctctcctccaacttggaacttcccgtcttcgatcttct--c-ttctctctct 57
||||||||||||||| ||||||||||||||| ||| |||||||||| | ||||||||||
Sbjct 1 AGGTTTCTCTCTCCTTCAACTTGGAACTTCCGGTCGTCGATCTTCTCCCTTTCTCTCTCT 60
Query 58 cttcATCGCACGCTGTGCCCAGCCAGCTCAAAACACTGCACTTCCGCTTTTTATCAAGAT 117
| || || | | |||||||||||||| | |||||||||||||||||| |||| |||||||
Sbjct 61 C-TC-TCTCTCACTGTGCCCAGCCAGGTAAAAACACTGCACTTCCGC-TTTT-TCAAGAT 116
Query 118 CAATCTCTA-C-CAATACTTAGAAAAGTTCTTTCCTTTTTGTCAAATTCTTTCAATTTCT 175
||||||||| | | || | || ||||||||||||||||||||||||||||||||||||||
Sbjct 117 CAATCTCTATCTCTATTCATAAAAAAGTTCTTTCCTTTTTGTCAAATTCTTTCAATTTCT 176
Query 176 CTCTTCAATTCCCTACGAATTA--CTCACTTCGGATCCAATCAGCTCTTTATAGCCTCTG 233
| ||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 177 CACTTGAATTCCCTACGAATTACTCTCACTTCGGATCCAATCAGCTCGTTATATCCTCTG 236
Query 234 CGTTTGGGAGTCAATCTTTCTCTCTTCGACAATTAAGGGTTTCGTATAAAGATTGCTGTT 293
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||
Sbjct 237 CGTTTGGGAGTCAATCTTTCTCTCTTCGATAATAAAGGGTTTCGTATAAAGATTGCGGTT 296
Query 294 TTACGACAGGATTCTGAATAAGGAGAAGAAGGGTTGGTTTCATTTGGATGGAAAGTATAT 353
|||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||
Sbjct 297 TTACGACAGGATTCTGTGTAAGGAGAAGAAGGGCTAGTTTCATTTGGATGGAAAGTATAT 356
Query 354 GGTAGGTCTACACATTAATATGGAAGCGCAGATTCATATACTTGAGCAGGAAGCTTATTC 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGTAGGTCTACACATTAATATGGAAGCGCAGATTCATATACTTGAGCAGGAAGCTTATTC 416
Query 414 TGCTGTATTAAGAGCTTTTCAAGCACAGGCTGATGAATTTTCTTGGGATAAAGCAAC-CG 472
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 417 TGCTGTATTAAGGGCTTTTCAAGCACAGGCTGATGAATTTTCTTGGGATAAA-CAAGACG 475
Query 473 TGATGACAAACCTACGTAAAGAATTGAGGATATCTGATGATGAAAACCGACAACTGTTGA 532
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 476 TGATGACAAACCTACGTAAAGAATTGAGGATATCTGATGATGAAAACCGAGAACTGTTGA 535
Query 533 ACAATGTCCATAATGATGATCTTATCAAAAGAATAAGAGATTCGAGACCAAGAGGTGGAA 592
||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 536 ACAATCTTCATAATGATGATCTTATCAAAAGAATAAGAGATTCGAGACCTAGAGGTGGAA 595
Query 593 ACCAGGTTGTTAGACATCAGTCCCTCGATGTTCATCCTAGTCCGACTTTTTCAGCTTCTC 652
||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct 596 ACCAGGTTGTTAGACATCAATCCCTCGATGTTCTTCCTAGTCCGACCTTTTCAGCTTCTC 655
Query 653 GGAAGAAACAGAAGACGTTCCAATCCTATCCGTCGATTGGTTCTACTAGAAGTAAGTCAT 712
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 656 GAAAGAAACAGAAGACGTTCCAATCCTATCCGTCGATTGGTTCTACTAGAAATAAGTCGT 715
Query 713 TCAATAACCGTGTAGTATCAGCAAATGAACCTGCGGAAGCTCTTATTGGAAGAAAAGTGT 772
||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||
Sbjct 716 TCAATAACCGTGTAGTAACAGCAAATGAACCCGCTGAAGCTCTTATTGGAAGAAAAGTGT 775
Query 773 GGACAAAATGGCCTGAAGACAACAGCTTTTATGAAGCAGTAGTTACACAATACAATGCAA 832
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 776 GGACAAAATGGCCTGATGACAACAGCTTTTATGAAGCAGTAGTGACACAATACAATGCAG 835
Query 833 ATGAGGGTCGACATGCGTTGGTATATGATATAAACACAGTGAATGAGACATGGGAATGGG 892
||||||| |||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct 836 ATGAGGGGCGACATGCGTTGGTATATGACATAAACACAGCCAATGAGACGTGGGAATGGG 895
Query 893 TTGATCTTAATGAGATTCCAACGAAAGATATAAGATGGGATGGAGAGGAAGA-TGGGGTA 951
|||||||||| ||||||||| || ||||||||||||||||||||||||| || |||||||
Sbjct 896 TTGATCTTAAGGAGATTCCACCGGAAGATATAAGATGGGATGGAGAGGA-GAATGGGGTA 954
Query 952 ACTTTGAATGTAGGACATGGCGGTGGAACAACTCGTGGGAATCGAAGGACCTTAAGCCAT 1011
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 955 ACTTTAAATGTAGGACATGGCGGTGGAACAACCCGTGGGAATCGAAGAACCTTAAGCCAT 1014
Query 1012 GGTGGTAGAGGGAGAGGTCCAAGAACTCAGCCAAGAAGAGAACATTTAGCAACGGAAAAC 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GGTGGTAGAGGGAGAGGTCCAAGAACTCAGCCAAGAAGAGAACATTTAGCAACGGAAAAC 1074
Query 1072 GGTGGTGGGAGGAAGTTTTTCGGTGAGATTGAATTGTTCAACACAGACTCACTTGTGAAA 1131
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1075 GGTGGTGGGAGGAAGTTTTTCGATGAGATTGAATTGTTCAACACAGACTCACTTGTGAAA 1134
Query 1132 GAGGTCGAGAGAGTTTTTGATTCAAACCTTCCTGATCCACATGAGCTTGATAAGGCCAAG 1191
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1135 GAGGTGGAGAGAGTTTTTGATTCTAACCTTCCTGATCCACATGAGCTTGATAAGGCCAAG 1194
Query 1192 AAGCTACTCAAGGAACATGAACAGGCGCTTATTGCTGCCATTGCAAGGCTTACGGATGCT 1251
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1195 AAACTACTCAAGGAACATGAACAGGCGCTTATTGCTGCCATTGCAAGGCTTGCGGATGCT 1254
Query 1252 TCTGATTACGAAAGCGATGGAGAAGAACCGTATTCGCATGAGCTTCCAATGCTGCTGGGG 1311
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TCTGATTACGAAACCGATGGAGAAGAACCGTATTCGCATGAGCTTCCAATGCTGCTGGGA 1314
Query 1312 TGAGTA-TGTATGA-----CACCATCACCCCTAGGAAAAATGACTAGCAATATTTCTTTT 1365
||| | || || | |||||||| |||||||| ||||||| |||||||||||||||
Sbjct 1315 TGAC-ACTGGATCAAAAAACACCATCAACCCTAGGATAAATGACCAGCAATATTTCTTTT 1373
Query 1366 T-CTTCTGTT-TTGCTT-TAAGGGATCCCAGAAAATGATTTTGTTCATATATGATGAACA 1422
| ||| | || || || |||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 1374 TTCTT-T-TTATT-CTCCTAAGGGATCCTAGAAAAGGATTTTGTTCATATATGATAAACA 1430
Query 1423 ATTAGTAGTATTCTTCTAATTTGTGGTTTCAGAATGTATGAAA-ATAATCGTTAGGAATT 1481
|||||| | | ||| ||| ||||||||||||| ||||||| | ||| ||||||||||||
Sbjct 1431 -TTAGTA-T-T-CTTTTAAGTTGTGGTTTCAGA-TGTATGATATATATTCGTTAGGAATT 1485
Query 1482 TTGTTTGTAAAAACAC 1497
||||||||||||||||
Sbjct 1486 TTGTTTGTAAAAACAC 1501
> Ahg478573 jgi|Araly1|478573|fgenesh2_kg.3__1274__AT3G12140.3
Length=1347
Score = 444 bits (240), Expect = 1e-123
Identities = 700/909 (77%), Gaps = 83/909 (9%)
Strand=Plus/Plus
Query 361 CTACACATTAATATGGAAG-CGCAGATTCAT-ATACTTGAGCAGGAAGCTTATTCTGCTG 418
||||| | | |||||| || | || |||||| | ||||||||||||||| ||| | ||||
Sbjct 267 CTACATAGTGATATGG-AGACACAAATTCATCA-ACTTGAGCAGGAAGCATATACCGCTG 324
Query 419 TATTAAGAGCTTTTCAAGCACAGGCTGATG-AATTTTCTTGGGATAAAGCAACCGTGATG 477
| ||||| |||||| |||| ||| |||||| | |||||||||| |||| || | ||||
Sbjct 325 TTTTAAGGGCTTTTAAAGCGCAGTCTGATGCGA-TTTCTTGGGAAAAAGAAAGCTTGATA 383
Query 478 A-CAAACCTACGTAAAGAATTGAGGA-TATCTGATGATGAAAACCGACAACTGT-TGAAC 534
| | || | ||||||||||||| || |||||||||||||| | ||| | || | |||
Sbjct 384 ACCGAA-TTGCGTAAAGAATTGA-GAGTATCTGATGATGAACATCGAGAGCT-TCTGAGT 440
Query 535 AATGTCCATAATGATGAT-CTTATCAAAAGAATAAGAGATTCGAGACCA-AGAGGTGGAA 592
| || |||| |||||| | |||| | || |||||||||| |||| || |||| ||||
Sbjct 441 AGGGTTAATAAGGATGATAC-TATCCAGAGGATAAGAGATTGGAGA-CAGGGAGGCGGAA 498
Query 593 ACCAGGTTGTTAGACAT----C-AGTC--CC--TCGATGTTCATCCTAGTCCGACTTTTT 643
||| | ||||||| | | || || | ||||||| ||||||||| ||||| |
Sbjct 499 GCCAAAATACTAGACATGCAACTATTCAGCCTTTTGATGTTCTTCCTAGTCCCACTTTCT 558
Query 644 CAGCT-TCTCGGAAGAAACAGAAGACGTTCCAATC--CT-ATCCGTCGATTGGTTCTACT 699
||||| | || ||||||||||| || |||||||| | |||| || |||||| | |||
Sbjct 559 CAGCTGGC-CGAAAGAAACAGAAAACATTCCAATCTTATCATCCATCAATTGGTGCGACT 617
Query 700 AGAAGTAAGTCATTCAATA-AC-CGT-GTA-------G--TATCAGCAAATGAACCTGCG 747
||| || ||||||||||| | || ||| | |||||| ||||||| ||||
Sbjct 618 GGAAATAGGTCATTCAATAGTCGTGTGGTATCTGGTGGCATATCAGGAAATGAATCTGCT 677
Query 748 GAAGCTCTT-ATTGGAAGAAAAGTGTGGACAAAATGGCCTGAAGACAAC-AGCTTTTATG 805
|||||| || || |||||||||||||||||||||||||||||||| ||| | ||| ||||
Sbjct 678 GAAGCT-TTGATCGGAAGAAAAGTGTGGACAAAATGGCCTGAAGATAACCA-CTTCTATG 735
Query 806 AAGCAGT-AGTTACACAATACAATGCAAATGAGGGTCGACATGCGTTGGTATATGATATA 864
||||| | | | || || ||||||||| |||| ||||| ||||| ||||| |||||||||
Sbjct 736 AAGCAATTA-TAACCCAGTACAATGCAGATGATGGTCGGCATGCTTTGGTGTATGATATA 794
Query 865 AACACAG-TGAATGAGACATGGGAATGGGTTGATCTTAATGAGATTCCAACGAAAGATAT 923
| ||| | ||||| || ||||||||||||||||| || ||||| ||| || |||||||
Sbjct 795 CATGCAGCT-AATGAAACGTGGGAATGGGTTGATCTCAAGGAGATACCACCGGAAGATAT 853
Query 924 AAGATGGGATGGAGAGGA-AGATGGGGTAACTTTGAATGTAGGACATGGCGGTGGAACAA 982
| | |||||||| ||||| || ||||||| |||| || | |||||||| ||||| ||
Sbjct 854 ACGGTGGGATGGGGAGGAGAG-TGGGGTAGCTTTAAACATCGGACATGGAAGTGGATCAT 912
Query 983 CTC-GTGGGAATCGAAGGA-CCTTAAG-CCATGGTGGTAGAGGGAGAGGTCCAAGAA--C 1037
|| |||| || ||||| | || ||| ||||||||||||||||||||| ||||||| |
Sbjct 913 -TCCGTGGCAACCGAAGAAGCC--AAGTCCATGGTGGTAGAGGGAGAGGGCCAAGAATTC 969
Query 1038 -TCAGCCAAGAAGAGAACAT-TTAGCA--ACGGA-A-AAC-G---G-TGGTGG-GA--GG 1083
||| ||||||||||||| | ||| || || | | ||| | | |||||| | ||
Sbjct 970 ATCAACCAAGAAGAGAAC-TCTTACCACCACCAACACAACAGAATGGTGGTGGTGGTCGG 1028
Query 1084 A-AGTTTT-TCGG-TGAGATTGAATTGTTCAACACAGACTCACTTGTGAAAGAGGTCGAG 1140
| | || || | ||| ||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1029 AGAACTTCCTCTGATGATATTGAATTGTTCAACACAGACTCGCTTGTGAAGGAGGTGGAG 1088
Query 1141 AGAGTTTTTGATTCAAAC-CTTCCTGATCCACAT-GAGCTTGATAAGGCCAAGAAGCTAC 1198
|||||||| ||||| | | | ||||||||| | | ||||| |||||||||||||| | |
Sbjct 1089 AGAGTTTTCGATTCTA-CTCATCCTGATCCGC-TCGAGCTCGATAAGGCCAAGAAAATGC 1146
Query 1199 TCAAG-GAA 1206
||||| |||
Sbjct 1147 TCAAGAGAA 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5