BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06780.1 Length=1535 Score E Sequences producing significant alignments: (Bits) Value Ahg487491 jgi|Araly1|487491|fgenesh2_kg.6__625__AT5G06780.1 2176 0.0 Ahg478573 jgi|Araly1|478573|fgenesh2_kg.3__1274__AT3G12140.3 444 1e-123 > Ahg487491 jgi|Araly1|487491|fgenesh2_kg.6__625__AT5G06780.1 Length=1504 Score = 2176 bits (1178), Expect = 0.0 Identities = 1409/1516 (93%), Gaps = 34/1516 (2%) Strand=Plus/Plus Query 1 AGGTttctctctcctccaacttggaacttcccgtcttcgatcttct--c-ttctctctct 57 ||||||||||||||| ||||||||||||||| ||| |||||||||| | |||||||||| Sbjct 1 AGGTTTCTCTCTCCTTCAACTTGGAACTTCCGGTCGTCGATCTTCTCCCTTTCTCTCTCT 60 Query 58 cttcATCGCACGCTGTGCCCAGCCAGCTCAAAACACTGCACTTCCGCTTTTTATCAAGAT 117 | || || | | |||||||||||||| | |||||||||||||||||| |||| ||||||| Sbjct 61 C-TC-TCTCTCACTGTGCCCAGCCAGGTAAAAACACTGCACTTCCGC-TTTT-TCAAGAT 116 Query 118 CAATCTCTA-C-CAATACTTAGAAAAGTTCTTTCCTTTTTGTCAAATTCTTTCAATTTCT 175 ||||||||| | | || | || |||||||||||||||||||||||||||||||||||||| Sbjct 117 CAATCTCTATCTCTATTCATAAAAAAGTTCTTTCCTTTTTGTCAAATTCTTTCAATTTCT 176 Query 176 CTCTTCAATTCCCTACGAATTA--CTCACTTCGGATCCAATCAGCTCTTTATAGCCTCTG 233 | ||| |||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 177 CACTTGAATTCCCTACGAATTACTCTCACTTCGGATCCAATCAGCTCGTTATATCCTCTG 236 Query 234 CGTTTGGGAGTCAATCTTTCTCTCTTCGACAATTAAGGGTTTCGTATAAAGATTGCTGTT 293 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| Sbjct 237 CGTTTGGGAGTCAATCTTTCTCTCTTCGATAATAAAGGGTTTCGTATAAAGATTGCGGTT 296 Query 294 TTACGACAGGATTCTGAATAAGGAGAAGAAGGGTTGGTTTCATTTGGATGGAAAGTATAT 353 |||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| Sbjct 297 TTACGACAGGATTCTGTGTAAGGAGAAGAAGGGCTAGTTTCATTTGGATGGAAAGTATAT 356 Query 354 GGTAGGTCTACACATTAATATGGAAGCGCAGATTCATATACTTGAGCAGGAAGCTTATTC 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GGTAGGTCTACACATTAATATGGAAGCGCAGATTCATATACTTGAGCAGGAAGCTTATTC 416 Query 414 TGCTGTATTAAGAGCTTTTCAAGCACAGGCTGATGAATTTTCTTGGGATAAAGCAAC-CG 472 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 417 TGCTGTATTAAGGGCTTTTCAAGCACAGGCTGATGAATTTTCTTGGGATAAA-CAAGACG 475 Query 473 TGATGACAAACCTACGTAAAGAATTGAGGATATCTGATGATGAAAACCGACAACTGTTGA 532 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 476 TGATGACAAACCTACGTAAAGAATTGAGGATATCTGATGATGAAAACCGAGAACTGTTGA 535 Query 533 ACAATGTCCATAATGATGATCTTATCAAAAGAATAAGAGATTCGAGACCAAGAGGTGGAA 592 ||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 536 ACAATCTTCATAATGATGATCTTATCAAAAGAATAAGAGATTCGAGACCTAGAGGTGGAA 595 Query 593 ACCAGGTTGTTAGACATCAGTCCCTCGATGTTCATCCTAGTCCGACTTTTTCAGCTTCTC 652 ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| Sbjct 596 ACCAGGTTGTTAGACATCAATCCCTCGATGTTCTTCCTAGTCCGACCTTTTCAGCTTCTC 655 Query 653 GGAAGAAACAGAAGACGTTCCAATCCTATCCGTCGATTGGTTCTACTAGAAGTAAGTCAT 712 | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 656 GAAAGAAACAGAAGACGTTCCAATCCTATCCGTCGATTGGTTCTACTAGAAATAAGTCGT 715 Query 713 TCAATAACCGTGTAGTATCAGCAAATGAACCTGCGGAAGCTCTTATTGGAAGAAAAGTGT 772 ||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| Sbjct 716 TCAATAACCGTGTAGTAACAGCAAATGAACCCGCTGAAGCTCTTATTGGAAGAAAAGTGT 775 Query 773 GGACAAAATGGCCTGAAGACAACAGCTTTTATGAAGCAGTAGTTACACAATACAATGCAA 832 |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 776 GGACAAAATGGCCTGATGACAACAGCTTTTATGAAGCAGTAGTGACACAATACAATGCAG 835 Query 833 ATGAGGGTCGACATGCGTTGGTATATGATATAAACACAGTGAATGAGACATGGGAATGGG 892 ||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||||| Sbjct 836 ATGAGGGGCGACATGCGTTGGTATATGACATAAACACAGCCAATGAGACGTGGGAATGGG 895 Query 893 TTGATCTTAATGAGATTCCAACGAAAGATATAAGATGGGATGGAGAGGAAGA-TGGGGTA 951 |||||||||| ||||||||| || ||||||||||||||||||||||||| || ||||||| Sbjct 896 TTGATCTTAAGGAGATTCCACCGGAAGATATAAGATGGGATGGAGAGGA-GAATGGGGTA 954 Query 952 ACTTTGAATGTAGGACATGGCGGTGGAACAACTCGTGGGAATCGAAGGACCTTAAGCCAT 1011 ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 955 ACTTTAAATGTAGGACATGGCGGTGGAACAACCCGTGGGAATCGAAGAACCTTAAGCCAT 1014 Query 1012 GGTGGTAGAGGGAGAGGTCCAAGAACTCAGCCAAGAAGAGAACATTTAGCAACGGAAAAC 1071 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 GGTGGTAGAGGGAGAGGTCCAAGAACTCAGCCAAGAAGAGAACATTTAGCAACGGAAAAC 1074 Query 1072 GGTGGTGGGAGGAAGTTTTTCGGTGAGATTGAATTGTTCAACACAGACTCACTTGTGAAA 1131 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1075 GGTGGTGGGAGGAAGTTTTTCGATGAGATTGAATTGTTCAACACAGACTCACTTGTGAAA 1134 Query 1132 GAGGTCGAGAGAGTTTTTGATTCAAACCTTCCTGATCCACATGAGCTTGATAAGGCCAAG 1191 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1135 GAGGTGGAGAGAGTTTTTGATTCTAACCTTCCTGATCCACATGAGCTTGATAAGGCCAAG 1194 Query 1192 AAGCTACTCAAGGAACATGAACAGGCGCTTATTGCTGCCATTGCAAGGCTTACGGATGCT 1251 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1195 AAACTACTCAAGGAACATGAACAGGCGCTTATTGCTGCCATTGCAAGGCTTGCGGATGCT 1254 Query 1252 TCTGATTACGAAAGCGATGGAGAAGAACCGTATTCGCATGAGCTTCCAATGCTGCTGGGG 1311 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 TCTGATTACGAAACCGATGGAGAAGAACCGTATTCGCATGAGCTTCCAATGCTGCTGGGA 1314 Query 1312 TGAGTA-TGTATGA-----CACCATCACCCCTAGGAAAAATGACTAGCAATATTTCTTTT 1365 ||| | || || | |||||||| |||||||| ||||||| ||||||||||||||| Sbjct 1315 TGAC-ACTGGATCAAAAAACACCATCAACCCTAGGATAAATGACCAGCAATATTTCTTTT 1373 Query 1366 T-CTTCTGTT-TTGCTT-TAAGGGATCCCAGAAAATGATTTTGTTCATATATGATGAACA 1422 | ||| | || || || |||||||||| |||||| ||||||||||||||||||| |||| Sbjct 1374 TTCTT-T-TTATT-CTCCTAAGGGATCCTAGAAAAGGATTTTGTTCATATATGATAAACA 1430 Query 1423 ATTAGTAGTATTCTTCTAATTTGTGGTTTCAGAATGTATGAAA-ATAATCGTTAGGAATT 1481 |||||| | | ||| ||| ||||||||||||| ||||||| | ||| |||||||||||| Sbjct 1431 -TTAGTA-T-T-CTTTTAAGTTGTGGTTTCAGA-TGTATGATATATATTCGTTAGGAATT 1485 Query 1482 TTGTTTGTAAAAACAC 1497 |||||||||||||||| Sbjct 1486 TTGTTTGTAAAAACAC 1501 > Ahg478573 jgi|Araly1|478573|fgenesh2_kg.3__1274__AT3G12140.3 Length=1347 Score = 444 bits (240), Expect = 1e-123 Identities = 700/909 (77%), Gaps = 83/909 (9%) Strand=Plus/Plus Query 361 CTACACATTAATATGGAAG-CGCAGATTCAT-ATACTTGAGCAGGAAGCTTATTCTGCTG 418 ||||| | | |||||| || | || |||||| | ||||||||||||||| ||| | |||| Sbjct 267 CTACATAGTGATATGG-AGACACAAATTCATCA-ACTTGAGCAGGAAGCATATACCGCTG 324 Query 419 TATTAAGAGCTTTTCAAGCACAGGCTGATG-AATTTTCTTGGGATAAAGCAACCGTGATG 477 | ||||| |||||| |||| ||| |||||| | |||||||||| |||| || | |||| Sbjct 325 TTTTAAGGGCTTTTAAAGCGCAGTCTGATGCGA-TTTCTTGGGAAAAAGAAAGCTTGATA 383 Query 478 A-CAAACCTACGTAAAGAATTGAGGA-TATCTGATGATGAAAACCGACAACTGT-TGAAC 534 | | || | ||||||||||||| || |||||||||||||| | ||| | || | ||| Sbjct 384 ACCGAA-TTGCGTAAAGAATTGA-GAGTATCTGATGATGAACATCGAGAGCT-TCTGAGT 440 Query 535 AATGTCCATAATGATGAT-CTTATCAAAAGAATAAGAGATTCGAGACCA-AGAGGTGGAA 592 | || |||| |||||| | |||| | || |||||||||| |||| || |||| |||| Sbjct 441 AGGGTTAATAAGGATGATAC-TATCCAGAGGATAAGAGATTGGAGA-CAGGGAGGCGGAA 498 Query 593 ACCAGGTTGTTAGACAT----C-AGTC--CC--TCGATGTTCATCCTAGTCCGACTTTTT 643 ||| | ||||||| | | || || | ||||||| ||||||||| ||||| | Sbjct 499 GCCAAAATACTAGACATGCAACTATTCAGCCTTTTGATGTTCTTCCTAGTCCCACTTTCT 558 Query 644 CAGCT-TCTCGGAAGAAACAGAAGACGTTCCAATC--CT-ATCCGTCGATTGGTTCTACT 699 ||||| | || ||||||||||| || |||||||| | |||| || |||||| | ||| Sbjct 559 CAGCTGGC-CGAAAGAAACAGAAAACATTCCAATCTTATCATCCATCAATTGGTGCGACT 617 Query 700 AGAAGTAAGTCATTCAATA-AC-CGT-GTA-------G--TATCAGCAAATGAACCTGCG 747 ||| || ||||||||||| | || ||| | |||||| ||||||| |||| Sbjct 618 GGAAATAGGTCATTCAATAGTCGTGTGGTATCTGGTGGCATATCAGGAAATGAATCTGCT 677 Query 748 GAAGCTCTT-ATTGGAAGAAAAGTGTGGACAAAATGGCCTGAAGACAAC-AGCTTTTATG 805 |||||| || || |||||||||||||||||||||||||||||||| ||| | ||| |||| Sbjct 678 GAAGCT-TTGATCGGAAGAAAAGTGTGGACAAAATGGCCTGAAGATAACCA-CTTCTATG 735 Query 806 AAGCAGT-AGTTACACAATACAATGCAAATGAGGGTCGACATGCGTTGGTATATGATATA 864 ||||| | | | || || ||||||||| |||| ||||| ||||| ||||| ||||||||| Sbjct 736 AAGCAATTA-TAACCCAGTACAATGCAGATGATGGTCGGCATGCTTTGGTGTATGATATA 794 Query 865 AACACAG-TGAATGAGACATGGGAATGGGTTGATCTTAATGAGATTCCAACGAAAGATAT 923 | ||| | ||||| || ||||||||||||||||| || ||||| ||| || ||||||| Sbjct 795 CATGCAGCT-AATGAAACGTGGGAATGGGTTGATCTCAAGGAGATACCACCGGAAGATAT 853 Query 924 AAGATGGGATGGAGAGGA-AGATGGGGTAACTTTGAATGTAGGACATGGCGGTGGAACAA 982 | | |||||||| ||||| || ||||||| |||| || | |||||||| ||||| || Sbjct 854 ACGGTGGGATGGGGAGGAGAG-TGGGGTAGCTTTAAACATCGGACATGGAAGTGGATCAT 912 Query 983 CTC-GTGGGAATCGAAGGA-CCTTAAG-CCATGGTGGTAGAGGGAGAGGTCCAAGAA--C 1037 || |||| || ||||| | || ||| ||||||||||||||||||||| ||||||| | Sbjct 913 -TCCGTGGCAACCGAAGAAGCC--AAGTCCATGGTGGTAGAGGGAGAGGGCCAAGAATTC 969 Query 1038 -TCAGCCAAGAAGAGAACAT-TTAGCA--ACGGA-A-AAC-G---G-TGGTGG-GA--GG 1083 ||| ||||||||||||| | ||| || || | | ||| | | |||||| | || Sbjct 970 ATCAACCAAGAAGAGAAC-TCTTACCACCACCAACACAACAGAATGGTGGTGGTGGTCGG 1028 Query 1084 A-AGTTTT-TCGG-TGAGATTGAATTGTTCAACACAGACTCACTTGTGAAAGAGGTCGAG 1140 | | || || | ||| ||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 1029 AGAACTTCCTCTGATGATATTGAATTGTTCAACACAGACTCGCTTGTGAAGGAGGTGGAG 1088 Query 1141 AGAGTTTTTGATTCAAAC-CTTCCTGATCCACAT-GAGCTTGATAAGGCCAAGAAGCTAC 1198 |||||||| ||||| | | | ||||||||| | | ||||| |||||||||||||| | | Sbjct 1089 AGAGTTTTCGATTCTA-CTCATCCTGATCCGC-TCGAGCTCGATAAGGCCAAGAAAATGC 1146 Query 1199 TCAAG-GAA 1206 ||||| ||| Sbjct 1147 TCAAGAGAA 1155 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57478179705 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5