BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06790.1
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487492 jgi|Araly1|487492|fgenesh2_kg.6__626__AT5G06790.1 1219 0.0
> Ahg487492 jgi|Araly1|487492|fgenesh2_kg.6__626__AT5G06790.1
Length=975
Score = 1219 bits (660), Expect = 0.0
Identities = 886/991 (89%), Gaps = 32/991 (3%)
Strand=Plus/Plus
Query 15 agagagagaATGGCAATGCCACTCAAATCAA-CAtcttcttctatgtcttcttctcaatg 73
||||||||||||| |||||||| || | || || | |||||||||||||||||||||||
Sbjct 1 AGAGAGAGAATGGTAATGCCAC-CACTTAAATCAGCATCTTCTATGTCTTCTTCTCAATG 59
Query 74 ttcatcttcttcttcACCAACCTCAAGCTCCATGAAACTCAAATCCCTAATACAAACTCT 133
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 60 TTCATCTTCTTCTTCACCAACCTCAAGCTCCATGAAACTCAAATCTCTAATCCAAACTCT 119
Query 134 CATCATTTCTCAAGTTTGTCGGCTACTCCGAGAAATATCTAGAGTTTCATCCATTCTTGT 193
||||||||||||||||||||| ||| |||||||||| ||||||| | |||||||||||||
Sbjct 120 CATCATTTCTCAAGTTTGTCGACTAATCCGAGAAATTTCTAGAGCTACATCCATTCTTGT 179
Query 194 TAGAGTCTTGAGAAAGAAGCAATACAATTTCTTGTCAGTGTCTTCTTTACTCTATCCAAA 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TAGAGTCTTGAGAAAGAAGCAATACAATTTCTTGTCAGTGTCTTCTTTACTCTATCCAAA 239
Query 254 GAGAGTCTCAAAGAAACAAAAGAATAATATATTATTCGGCTCCTTCAGACTTCACTACAA 313
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGAGTCTCTAAGAAACAAAAGAATAATATATTATTCGGCTCCTTCAGACTTCACTACAA 299
Query 314 CTTTTGCTCCTCTCACGTAGTGCCTGTCTCTGCGCCAGTGCGTCTCCCGGAAGAGCTCTA 373
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 300 CTTTTGCTCCTCTCACGTAGTGCCTGTCTCTGCACCAGTTCGGCTCCCGGAAGAGCTTTA 359
Query 374 CTTAGCTCATCTCGTACACGAATCGACTTGGGAGTCAATGTACTCCACTGAATCCATGGA 433
||| |||||||||| | | || || ||||||||||||||||| || || || || |||||
Sbjct 360 CTTGGCTCATCTCGGATATGACTCTACTTGGGAGTCAATGTATTCAACGGATTCGATGGA 419
Query 434 TGGTCGCGATGATGATGAT---------CAAGAACCATCTCAGCTCTCTAGCTATCTAAG 484
| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 420 TAATCGCGATGATGATGATGGTGATATTCAAGAACCATCTCAGCTCTCTAGTTATCTAAG 479
Query 485 ACAGCTAGAGGATAAAGTTAAAGACGGCCAAGAAGAGGAGACAGAGACGATGATGAATGA 544
|||||||||||||||||||||||| || |||||||| || | ||||| ||||||||| ||
Sbjct 480 ACAGCTAGAGGATAAAGTTAAAGATGGTCAAGAAGAAGATAAAGAGATGATGATGAACGA 539
Query 545 GATTGATAAATTGGCTGATAGGTTTATAGCAAATTGCCATGAGAAGTTCATGTTGGAGAA 604
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 540 GATTGATAAATTGGCTGATATGTTTATAGCAAATTGTCATGAGAAGTTCATGTTGGAGAA 599
Query 605 AGTTGATTCATATAGGAGATCCCAAGGAACCCTGAATAGAAGCGGTTGATAACGATGATG 664
|||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||||
Sbjct 600 GGTTGATTCATATAGGAGATCCCAACAAACGCTGAATAGAAGCAGTTGATAATGATGATG 659
Query 665 ATGGGGCCTAAtttgtatctttcatttctttttatgtgatttcactttttccttctt-tt 723
| | ||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 660 AAGTGGCCTAATTTGTATCTTTCATTTCTTTTTATGTAATCCCACTTTTTCCTTCTTCTT 719
Query 724 cttcttttGAAACTCCTCACATGCATAGTTTGAA-TTATCTGAAAATGTGTATTGGAAGC 782
|| |||| || | | || | || || || |||||||||| |||||||||||
Sbjct 720 TTTTTTTTTT--CTTTTGA-ATT--TC-TTCAAAATTCTCTGAAAATGAGTATTGGAAGC 773
Query 783 ATAGGGATATATGGATTGTGTGGTGTTTGTTGTGTTACAGTCTAATGATGATGATATTGA 842
|||||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 774 ATAGGGG-AT--GGATTGTGTGGTGTTTGTTGTGTTACAATCTGATGATGATGATATTGA 830
Query 843 TGGTGGTGGTTTATAAACTAGAATAGACGACAGTCCAAAAAGGAGAAGAGAGGATACAAA 902
||||||||||||||||||||||| |||| | |||||||||||| |||||||||| ||||
Sbjct 831 TGGTGGTGGTTTATAAACTAGAACAGAC-A--GTCCAAAAAGGAAAAGAGAGGATGCAAA 887
Query 903 TGGAATGGATTTTTGTAACTTTGGCTTTTGTGGTTTATGACGTTCTTTTGCTACTAT--- 959
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 888 TGGAATGGATTTTTGTAACTTTGGCTTTTGTGGTTTA--A-GTTCTTTTGTTACTATATA 944
Query 960 -CTTCTGATATTGTTGTTTTCTTTTGGTTGT 989
||||||||||||||||||||||||| ||||
Sbjct 945 TCTTCTGATATTGTTGTTTTCTTTTGTTTGT 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39914694099
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5