BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06800.1
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487493 jgi|Araly1|487493|fgenesh2_kg.6__627__AT5G06800.1 1899 0.0
> Ahg487493 jgi|Araly1|487493|fgenesh2_kg.6__627__AT5G06800.1
Length=1421
Score = 1899 bits (1028), Expect = 0.0
Identities = 1310/1434 (91%), Gaps = 68/1434 (5%)
Strand=Plus/Plus
Query 85 tttttttgatt-aatcgaatctttgttttctttttcaacttcgaacttttgatttcCCTC 143
|||||||| || ||||||||| || ||| |||||||||||| ||||||| ||||||||
Sbjct 43 TTTTTTTGGTTGAATCGAATC--TG-TTT-TTTTTCAACTTCAAACTTTTTTTTTCCCTC 98
Query 144 CGTTCAATATATCATTGAACTT--AAC--AATCATATGTTTCTGTGGCAATTTGTGTCTT 199
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 99 CGTTCAATATATCATTGAACTTACAACAAAATCATATGTTTCTGTGGCAATTTGTGTCTT 158
Query 200 TCTTGCTTGTTATATGATGGATAACATCAACTTTGAATTCTCAAACGCTTCACAAGGAAG 259
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 159 TCATGCTTGTTATTTGATGGATAACATCAACTTTGAATTCTCAAACGCTTCACAAGAAAG 218
Query 260 CCGGCTACAGTTGCAGCAACAACCGCCCCAGCCGTTTAATTTACAAGACTTGAATATGAT 319
|||||||||| | || |||||||||||||||||||| |||||||||||
Sbjct 219 CCGGCTACAG-T-----------CG---CAGCCGTTTAATTTACAAGATTTGAATATGAT 263
Query 320 TCAATACAATCAACCATCATCTCCTTGGACTACGGAGACCTTCTCTGGTCTAACTCCGTA 379
|||||||||||||||| |||||||||||||||| || |||||||||||||| |||||||
Sbjct 264 TCAATACAATCAACCACCATCTCCTTGGACTACCGAAACCTTCTCTGGTCTTTCTCCGTA 323
Query 380 CGATTGCACAGCCAATCAATCTTTTCCCGTACAATGTTCATCTTCAAAACCCTACCCTTC 439
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 CGATTGCACTGCCAATCAATCTTTTCCCGTACAATGTTCATCTTCAAAACCCTACCCTTC 383
Query 440 CTCGTTTCATCCGTACCATCATCAATCTTCTGATTCTCCATCATTAGACCAATCTGTATC 499
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 384 CTCGTTTCATCCGTACCATCATCAATCTTCTGATCCTCCATCATTAGACCAATCTGTATC 443
Query 500 GATGATTCCTATGCAGCCTCTTCCGGATCAATATATGAAGCCATTATATCAAAGATCTTG 559
|||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||
Sbjct 444 GATGCTTCCTATGCAGCCTCTTCCGGATCAATATTTGAAACCATTCTATCAAAGATCATG 503
Query 560 CTCGAACGATTTTGCCGCAACAAATGCTTCATCAGCCTCTTACTCGCTTTCTTTTGAAGC 619
| |||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 504 CGCGAATGATTTCGCCGCAACAAATGCATCATCAGCCTCATACTCGCTTTCTTTTGAAGC 563
Query 620 AAGTCATGATCCACAAGAACTATGCAGAAGGACCTATAGTAATTCTAATGTAACACATCT 679
|| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 564 AAATCATGATCCACAAGAACTATGCAGGAGGACCTATAGTAGTTCTAATGTAACACATCT 623
Query 680 TAATTTCACATCATCACAACATCAACCTAAACAGAGTCATCCAAGATTTTCTTCTCCTCC 739
||||| | |||| || | ||||||||||| | ||||||||||||||||||||||||
Sbjct 624 GAATTT--C-TCAT--CATTA-CAACCTAAACAAAATCATCCAAGATTTTCTTCTCCTCC 677
Query 740 TTCATTCTCAATCCATGGAGGGTCTATGGCTCCTAACTGTGTGAACAAGACACGGATAAG 799
||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 678 TTCATTCTCAACCCATGGAGGGTCGGTGGCTCCAAACTGTGTGAACAAGACACGGATAAG 737
Query 800 ATGGACTCAAGATCTTCATGAGAAGTTTGTGGAGTGCGTTAATCGTC-TTGGTGGCGCTG 858
||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 738 ATGGACTCAAGATCTTCATGAGAAGTTTGTGGAGTGCGTTAATCG-CATTGGTGGTGCTG 796
Query 859 ATAAGGCGACGCCCAAGGCGATATTGAAGCGGATGGATTCTGATGGACTCACAATATTTC 918
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 797 ATAAGGCAACGCCCAAGGCGATATTGAAGTTGATGGATTCTGATGGACTCACAATATTTC 856
Query 919 ACGTTAAAAGCCACTTACAGAAGTATAGAATTGCGAAATACATGCCTGAGTCTCAAGAAG 978
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 857 ATGTTAAAAGCCACTTACAGAAGTATAGAATTGCGAAATACATGCCCGAGTCTCAAGAAG 916
Query 979 GCAAGTTTGAGAAAAGAGCTTGTGCAAAAGAGCTGTCTCAGCTTGACACAAGAACTGGAG 1038
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 917 GCAAGTTTGAGAAAAGAGCTTGTGCGAAAGAGCTGTCTCAGCTTGACACAAGAACTGGAG 976
Query 1039 TGCAAATTAAAGAGGCACTTCAGCTTCAACTAGATGTTCAGAGGCATCTTCATGAACAAC 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TGCAAATTAAAGAGGCACTTCAGCTTCAACTAGATGTTCAGAGGCATCTTCATGAACAAC 1036
Query 1099 TAGAGATTCAACGAAACCTACAACTAAGAATCGAAGAACAAGGGAAACAACTGAAAATGA 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TAGAGATTCAACGAAACCTACAACTAAGAATCGAAGAACAAGGGAAACAACTGAAAATGA 1096
Query 1159 TGATGGAACAACAACaaaaaaaC-AAAGAGAGTCTTCTGAAGAAGCTACCAGACGCTGAA 1217
||||||||||||||||||||| | |||||||||||||| || | || |||||||||||||
Sbjct 1097 TGATGGAACAACAACAAAAAA-CGAAAGAGAGTCTTCT-AA-A-GCCACCAGACGCTGAA 1152
Query 1218 GCATCATTGTCTCTTCTCGATCCCCATATTCACTCTCCTCCTTCGCCTTTCTTGGTACAC 1277
|||||||||| |||||||| | || || ||||||||||||||||||||||||||||
Sbjct 1153 GCATCATTGTGTCTTCTCGCTTCCGATG---ACTCTCCTCCTTCGCCTTTCTTGGTACAA 1209
Query 1278 GACGCTGAAGCCCTGATGCTAACAAGTTATGAAGACACTCAACTCCAGTCCACCAAAAGT 1337
||| |||||||| ||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1210 GACACTGAAGCCTTGATGCTAACAAGTTATGAAGACACTCAACTCCAGTC-A--AA--G- 1263
Query 1338 TGAAAAATGAGAGATACTCTGGCTAAATTAGAAAAGGCCTAAAGCATGTTTCTACTCTAT 1397
| | | || | | | |||| |||||||||||||||||||||||||||||||
Sbjct 1264 --A----T-A-AG-T--T--GAA-AAAT-AGAAAAGGCCTAAAGCATGTTTCTACTCTAT 1308
Query 1398 TCAAAGTGGTATAAAGTTATAAGAGTCGCGACAAGA-A-TGTCCAAAGTGCT---ACACA 1452
|||||||||| ||||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 1309 TCAAAGTGGTGTAAAGTTATAAGAGTCGCGACAAGAGAATGTCCAAAGTGCTGCTACACA 1368
Query 1453 CACTAACACTTG-GAAACAGAATCAGGTACTAAATGTGAGCAAGTGGTGTGTGA 1505
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1369 CACTAACACTTGAGAA-CAGAATCAGGTACTAAATGTGAGCAAGTGGTGTGTGA 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58354255340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5