BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06810.1
Length=3426
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892608 jgi|Araly1|892608|Al_scaffold_0006_604 5175 0.0
> Ahg892608 jgi|Araly1|892608|Al_scaffold_0006_604
Length=3435
Score = 5175 bits (2802), Expect = 0.0
Identities = 3232/3439 (94%), Gaps = 32/3439 (1%)
Strand=Plus/Plus
Query 1 ATGAAACTTCGGCAAAACCCTAGTAGATTCACGTCTGTTCTCAAATGGGTATCACAACTT 60
|||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1 ATGAAACTTCTGCAAAACCCTAGTAGATTCACGTCTCTGCTCAAATGGGTATCACAACTT 60
Query 61 TCTCTAGAAACCCAATTAAAACCCTCAATTTCTGGAACTGGGTTTCTCCTCCGATGTGCC 120
|||||||||||||| ||||||||| ||||||||||||||| |||||||||||| || ||
Sbjct 61 TCTCTAGAAACCCATTTAAAACCCCCAATTTCTGGAACTGAATTTCTCCTCCGACGTACC 120
Query 121 CAAACCCCTAGATCTTTCGCCACCGTCACCGGTAACGAAGTTTGCAGTGAGAAATCGAAA 180
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CAAAACCCTAGATCTTTCGCCACCGTCACCGGTAACGAAGTTTCCAGTGAGAAATCGAAT 180
Query 181 GTGAAGAGAACCCGAAATGGGTTTAAAATCACTCCCA-ATGTTAGGAAATTAGCTGAGGA 239
||||||||||| ||||||||||||| ||||||||||| | |||||||||||||||||||
Sbjct 181 GTGAAGAGAACTCGAAATGGGTTTAGAATCACTCCCACA-ATTAGGAAATTAGCTGAGGA 239
Query 240 AGCAATGTTGGATTATTTCTATTCCACTAGGGGTTTACAGTATATGGTTGCAGAGAGTAT 299
||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 240 AGCAATGTTGGATTACTTCTATTCCACTAGGGGTTTGCAGTACATGGTTGCTGAGAGTAT 299
Query 300 GAGCAAGAACAGTCCAATTTTTATTGATAATCTTTTGAAGAAAGTTGATTGTGTTACTGC 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGCAAGAACAGTCCAATGTTTATTGATAATCTTTTGAAGAAAGTTGATTGTGTTACTGC 359
Query 360 TTCTGATATCAACCAATCTATTACTCGATATCTACGGTTTCACCCTGTCAATGAATTCGA 419
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 360 TTCTGATATCAACCAATCTATTACCCGATATCTACGGTTTCACCCGGTGAATGAATTCGA 419
Query 420 GCCTTTCCTTGAGAGTTCAGGTTTGAATCCCAGTGAGTATAATCATTTGGTTCCCTGTGA 479
|||||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 420 GCCTTTTCTTGAGAGTTCAGGTTTGAAGCCCACTGAGTATAGTCATTTGGTTCCCTGTGA 479
Query 480 TAAGGTCTTCTTGGATGAAGAAGGC-TTTTTGCTGGAGAACCATCATGTTTTGTGTTATA 538
||||||||||||||| |||||| || |||||||| |||||||||||||||||||||||||
Sbjct 480 TAAGGTCTTCTTGGAAGAAGAA-GCTTTTTTGCTTGAGAACCATCATGTTTTGTGTTATA 538
Query 539 GTGGTGTTGACCCTAAGAGGATTGGGAAGATCTTCAAGGAAGCTAGGGAAGTTTTTAGTT 598
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 539 GTGGTGTTGACCCTAAGAAGATTGGGAAGATCTTCAAGGAAGCTAGGGAAGTTTTTGGGT 598
Query 599 ATGAAACCGGGGTTTTAGCTTCTAAGATTAAGGCGTATGAGGATTTGGGGTTTAGCAGAT 658
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 ATGAAACCGGGGTTTTAGCTTCTAAGATTAAGGCGTAAGAGGATTTGGGGTTTAGCAGAT 658
Query 659 -TGTTTCTATCTAAGCTTATCGTTTGTAGTCCGAGAGTCTTGA-TGGGTCATACGAATAT 716
| |||||||| ||||||||||||||||| |||||| |||||| |||| |||||||| |
Sbjct 659 AT-TTTCTATCGAAGCTTATCGTTTGTAGCCCGAGAATCTTGATTGGG-AATACGAATGT 716
Query 717 TGAACTGGTTCAGGT-TGTAAAGACGTTGCAATCTTTAGGGTTTGAGTTCGAGTGGGTAA 775
|||||| | | |||| | ||||||||||| |||| | ||||||||||| || |||||||
Sbjct 717 TGAACTTGCTAAGGTCT-TAAAGACGTTGAAATCCATGGGGTTTGAGTTTGATTGGGTAA 775
Query 776 TGGAAAACTTGTCAGATGAGGGACC---TGATTGGAGCTCTGTGCATCGTGTTTTAAGCT 832
|||| ||| ||||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 776 TGGAGAACCTGTCAGATGAGGGGCCTTGTGATTGGAGCTCTGTGCATCGTGTTCTAAGCT 835
Query 833 TGCTTAGAGAAATCTGTTTTGATGAGGAAAAACTATATGGGTTAATCAGGAACTGTCCAA 892
||||||||||||||||||||||||||||| | |||| ||| ||||||||||| |||||||
Sbjct 836 TGCTTAGAGAAATCTGTTTTGATGAGGAAGAGCTATGTGGATTAATCAGGAAGTGTCCAA 895
Query 893 GTTTGCTTTTTGAGAATTCAGGGAAATGGACAGGGATTCTAGTTGGGTTTGAAACAAAGC 952
| || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 896 GACTGGTTTTTGAGAATTCAGGGAAATGGACAGTGATTCTAGTTGGGTTTGAAACAAAAC 955
Query 953 TTGGGGCATCTAGAAGTGAACTATGTTCGTTGTTTCAGAAATTCCCGCTGATTCAAGTAG 1012
| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 956 TCGGGTCATCTAGAAGTGAACTATGTTTGTTGTTTCAAAAATTCCCGCTGATTCAAGTAG 1015
Query 1013 AGAAATGTGTTTCGAATCTAAGGCAGTGCTTCTTGTTCTTGAAAGAGATCGAGATGGAAG 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGAAATGTGTTTCGAATCTAAGGCAGTGCTTCTTGTTCTTGAAAGAGATCGAGATGGAAG 1075
Query 1073 ATGATGAGATTCATAAGGTTTTCCGTTCTCATTCCTGGTGGCTTGGTTCATGTAAGTTAA 1132
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1076 ATGATGAGATTCATAAGGTTTTCCGTTCTCACTCCTGGTGGCTTGGTTCATGTAGGTTAA 1135
Query 1133 AGAAAACCAGTAGCTTGCTTGTGTTTTTGAAGGCTGGTAAAACTCGGGTTTGTCAGGTCA 1192
|||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 1136 AGAAAACCAGTAGCTTGCTTGTATTTTTGAAGGCTGGGAAAACCCGGGTTTGTCAGGTCA 1195
Query 1193 TTCAAGAAAACCCTGAAGAGATGAAAAAATGGACAATGGGTTCAAAAATCCAGCCGTTAC 1252
||||||||| ||| || ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1196 TTCAAGAAAGCCCAGAGGAGATGAAAAAATGGACAATGGGGTCAAAAATCCAGCCACTAC 1255
Query 1253 CAGCTACCAACGTAGACATTGAGTCGAAATC-AATGAAGACTCAGTTCTTATTAGACCTC 1311
||||||||||||||||||| || |||||| | |||||||||||||||||| |||||||||
Sbjct 1256 CAGCTACCAACGTAGACATAGACTCGAAA-CTAATGAAGACTCAGTTCTTGTTAGACCTC 1314
Query 1312 GGATACAAAGAAAACTCAGAGGAAATGGAGACAGCAATGAAGAATTTCCGTGGTAAAGGA 1371
||||||||||||||||| ||||||||||||| ||| | |||||||| ||||| ||| ||
Sbjct 1315 GGATACAAAGAAAACTCCGAGGAAATGGAGAGTGCACTCAAGAATTTTCGTGGCAAAAGA 1374
Query 1372 TCAGAACTCCGAGAGAGATTTAATGTCCTCGTAAGTTTGGGTTTTACCAAGAAAGATGTC 1431
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1375 TCTGAACTCCGAGAGAGATTTAATGTCCTCGTAAGTTTGGGTTTTACCGAGAAAGATGTC 1434
Query 1432 AAAGATATGGTGAAAGCATGTCCTACTATGCTCTCCCAGACCTGTGATATCCTAGAATCA 1491
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1435 AAAGATATGGTGAAAGCATGTCCTACTATGCTCTCCCAGACCTGTGATATACTAGAATCA 1494
Query 1492 AAGGTGAACTACCTTATAAAGGAATTAGGTTATCCGCTTTCGACTTTGGTGGATTTCCCT 1551
|||||||||||||||||||| |||||||||||||| | |||||||||||| |||||||||
Sbjct 1495 AAGGTGAACTACCTTATAAACGAATTAGGTTATCCTCATTCGACTTTGGTAGATTTCCCT 1554
Query 1552 TCATGTTTAAAGTTCACTCTTCAGCGGATGAAGCTCAGATTTGCAATGTTCTCTTGGCTT 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TCATGTTTAAAGTTCACTCTTCAGCGGATGAAGCTCAGATTTGCAATGTTCTCTTGGCTT 1614
Query 1612 CAAGCCCGAGGAAAAGTAGACCGCAAGATCAAAGTTAGCACAATGCTCGCTTGCTCGGAC 1671
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1615 CAAGCCCGAGGAAAAGTAGACCGCAAGATCAAAGTTAGTACTATGCTCGCTTGCTCGGAC 1674
Query 1672 AAAATATTC--G-TAATGTCTTTTATGCGAAACCCTAGATTCAAAAGTCTTCTTCTCAAT 1728
||||| ||| | |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1675 AAAATTTTCGTGATAATGTCTTTTATGCGAAACCCTAGATTCAAAAG---TCTTCTCAAT 1731
Query 1729 TGGGTATCACAAGCTTTTGCAGAAACCCCTTTAAAACCCCAACTTTC--TA-GAAACCCT 1785
|||||||||||||||||| ||||||||||||| ||||||||| |||| | ||||||||
Sbjct 1732 TGGGTATCACAAGCTTTTACAGAAACCCCTTTTAAACCCCAAGTTTCAGGAGGAAACCCT 1791
Query 1786 AGATTTTTCGCCACCCAAAGAGCACTCGTCGATGCTGAAGTTTCCGGCGAGAAATGGGGT 1845
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 AGATCTTTCGCCACCCAGAGAGCACTCGTCGATGCTGAAGTTTCCGGCGAGAAATGGGGT 1851
Query 1846 CTTAGAACTCGAAACGAGATTCGTAAAGTGGCTCAAGTTGCGATGTTTGATTACTTTTAT 1905
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1852 CTTAGAACTCGAAACGAGATTCGTAAAGTGGCTCAGGTTGCGATGTTTGATTACTTCTAT 1911
Query 1906 CAAACGAGAGGTTTGCAGTTTCTGGTTGCTGAGAGTATGAGTAAGAATGCTCCTGTTTTT 1965
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1912 CAAACGAGAGGTTTGCAGTTTCTGGTTGCTGAGAGTATGAGTAGGAATGCTCCTGTTTTT 1971
Query 1966 AATGATAATCTTTTGAAGAAGCTTAATGGTTGtgatgttgatgttgatgatgatgatgat 2025
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1972 AATGATAATCTTTTGAAGAAGCTAAATGGTTGTGATGTTGA---TGATGATGATGATG-- 2026
Query 2026 ATAGTTAAAGCTATTACTAGGTTTCTATGGTTTCATCCTGTTAATGAATTTGAGCCCTTT 2085
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2027 -TAGTTAAAGCCATTACTAGGTTTCTATGGTTTCATCCTGTGAATGAATTTGAGCCTTTT 2085
Query 2086 TTAGAGAGTTTAGGTTTGAAGCCGTCAGAGTTTAGTCATTTGATTCCTTGTGATAAGATG 2145
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2086 TTAGAGAGTTTAGGTTTGAAGCCGTCAGAGTTTAGTCACTTGATTCCTTGTGATAAGATG 2145
Query 2146 TTTTTGAATGAAGATGCTTTTTTGCTGGAGAACTATCATGTCTTTTGGAACTATGGAATT 2205
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct 2146 TTTTTGAATGAAGATGCTTTTTTGTTGGAGAATTATCATGTGTTTTGGAACTATGGAATT 2205
Query 2206 GGAAGGGAGAAGATGGGGAAGATCTTTAAGGAAGCTAGGGAAGTTTTCGGGTATGAAACC 2265
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 GGAAGAGAGAAGATGAGGAAGATCTTTAAGGAAGCTAGGGAAGTTTTCGGGTATGAAACC 2265
Query 2266 GGGGTTTTAGCTTCCAAGATTAAGTCTTATGAGGATTTGGGGTTTAGCAAATTGTTTCTA 2325
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 2266 GGGGTTTTAGCTTCCAAGATTAAGGCTTATGAGGATTTGGGGTTTAGCAAGTTGTTTCTA 2325
Query 2326 TCGAAACTTATAGTTTGTAGCCCAAGTATCTTGATTGGGGATATGAATGTTGGACTGGCT 2385
||||||||||| ||||||||||| ||||| ||||||||| || |||||||||||||||
Sbjct 2326 TCGAAACTTATCGTTTGTAGCCCGAGTATTTTGATTGGGAATGCGAATGTTGGACTGGCG 2385
Query 2386 AAGGTCATGGAGATGCTGAAAGCTATTGGTTTTGGTGTTGATTGGGTAACAGAGAACTTG 2445
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 2386 AAGGTCATGGAGATGCTGAAAGCTATTAGTTTTGGTGTCGATTGGGTAACAGAGAACTTG 2445
Query 2446 TCAGAGGAGGTGTCTTATGATTGGAGCTCTATGCATAGATGTCTAAGTTTTCTTAGAGAT 2505
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 2446 TCAGAGGAGGTGTCTTATGATTGGAGCTCTATGCATAGGTGTCTAAGTTTTCTCAGAGAT 2505
Query 2506 TTGTATGTTGATGAAAATGAGCTATGTGAGTTAATCAGAAAGATGCCAAGACTTATTTTC 2565
||| ||||||||| ||||||||| ||||||||||||| ||| ||||| ||| ||||||
Sbjct 2506 ATGTGTGTTGATGAGAATGAGCTACGTGAGTTAATCAGGAAGCGGCCAAAACTAATTTTC 2565
Query 2566 GAGGATTCAGGGGAATGGACATTGATTCTAGCTGGGTTTGAAGCAAAACTAGGGTCATCC 2625
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2566 GAGGATTCAGGGGAATGGACAATGATTCTAGCTGGGTTTGAAGCAAAACTAGGGTCATCC 2625
Query 2626 AGAAGTGAACTCTCTTCGTTGTTTCAGAAATTCCCTCAGTGTCAGAGTTTAGGTAAATTT 2685
||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct 2626 AGAAGTGAACTCTCTTCGTTGTTTCAGAAATTCCCACAGAGTCAGAGTATAGGTAAATTT 2685
Query 2686 GTTTTGAATTTAAGGCATTGCTTCTTGTTTCTGAAAGATATTGAGATGGATGATGACGAG 2745
|||| |||||||||||||||||||||||| |||||||||||||| ||||| | ||| ||
Sbjct 2686 GTTTCGAATTTAAGGCATTGCTTCTTGTTCCTGAAAGATATTGATATGGAGGCTGATGAA 2745
Query 2746 ATCGGTAAGATTTTCCGTTTGCACTCTTTGTGGATTGGTGTATCTCGTTTGAAGCAAACC 2805
||||||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||
Sbjct 2746 ATCGGTAAGATTTTCCGTTTGCATTCTTCGTGGCTTGGTGTAACTCGTTTGAAGCAAACC 2805
Query 2806 AGTACCTTACTTATCAATTTGAAGGGTGGGAAAGGGCGGCTATGTCAAGTCATTCAAGAA 2865
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 2806 AGTACCTTACTTATCAATTTGAAAGGTGGGAAAGGGCGGCTTTGTCAAGTCATTCAGGAA 2865
Query 2866 AATCCAGAAGAGATGAAAAAATGGATTATGGGGTTAAGAGTCCAGCCATTACCAGCTACT 2925
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2866 AATCCAGAAGAGATGAAAAAATGGATTATGGGGTTAAGAGTCCAGCCGTTACCAGCTACT 2925
Query 2926 GGATACAAGGTAAACACAAAGTCGAAAACAATGAAGACTCAGTTCTTGTTAGACCTCGGA 2985
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2926 GGATGCAAGGTAGACACAAAGTCGAAAACAATGAAGACTCAGTTCTTGTTAGACCTCGGA 2985
Query 2986 TACAAAGAAAACTCTGAGGAAATGGAGAGAGCACTCAAGAATTTCCGTGGCAAAGGATCT 3045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2986 TACAAAGAAAACTCTGAGGAAATGGAGAGAGCACTCAAGAATTTCCGTGGCAAAGGATCT 3045
Query 3046 GAACTCCGAGAGAGATTTAATGTCCTCGTGAGTTTCGGTCTTACTGAGAAAGATGTCAAA 3105
||||||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||||
Sbjct 3046 GAACTCCGAGAGAGATTTAATGTGCTCGTGAGTTTTGGTTTTACCGAGAAAGATGTCAAA 3105
Query 3106 GATATGGTGAAAGCATGTCCTAGTATCCTCACCCAGGCATGTGATATCTTAGAATCAAAG 3165
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3106 GATATGGTGAAAGCATGTCCTAGTATCCTCTCCCAGGCATGTGATATCTTAGAATCAAAG 3165
Query 3166 GTGAACTACCTTGTAAAGGAATTAGGTTATCCGCTTTCGACATTGGTGACTTTCCCAACA 3225
|| ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3166 GTTAACTACCTTATAAACGAATTAGGTCATCCGCTTTCGACATTGGTGACTTTCCCAACA 3225
Query 3226 TGTCTTAAGTACACTCTTCAGCGGATGAAGCTTCGATTTTCAATGTTCTCTTGGCTTCAA 3285
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3226 TGTCTTAAGTACACTCTTCAGCGGATGAAGCTTCGATTTGCAATGTTCTCTTGGCTTCAA 3285
Query 3286 GATCGAGGAAAAGCAGACCCAAAGCTT-CAAGTTAGTACTATACTTGTGTGCTCGGACAA 3344
||||||||||| ||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 3286 GATCGAGGAAAGGCAGACCCAAAGCTTGCA-GTTAGTACTATACTTGTGTGCTCTGACAA 3344
Query 3345 GTTCTTTGCCACTAGATTTGTAAACCGTCACCCCGATGGGCCTAAGCATTTGGAAGACCT 3404
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3345 GTTCTTTGCCACTAGATTTGTAAACCGTCACCCCGATGGGGCTAAGCATTTGGAAGACCT 3404
Query 3405 GAAGAAACTACTTGTGTGT 3423
||||||||| || |||||
Sbjct 3405 GAAGAAACTGTTTCTGTGT 3423
Score = 1201 bits (650), Expect = 0.0
Identities = 1224/1489 (82%), Gaps = 88/1489 (6%)
Strand=Plus/Plus
Query 1888 ATGTTTGATTACTTTTA-TCAAACGAGAGGTTTGCAGTTTC-TGGTTGCTGAGAGTATGA 1945
||||| |||||||| || || || || ||||||||| | | ||||||||||||||||||
Sbjct 244 ATGTTGGATTACTTCTATTC-CACTAGGGGTTTGCAG-TACATGGTTGCTGAGAGTATGA 301
Query 1946 GTAAGAA-TGCTCCTGTTTTTAATGATAATCTTTTGAAGAAGCTTAATGGTTGtgatgtt 2004
| ||||| | ||| | |||| |||||||||||||||| | || | | ||| ||
Sbjct 302 GCAAGAACAG-TCCAATGTTTATTGATAATCTTTTGAAG-A----AA--G-T-TGA--TT 349
Query 2005 gatgttgatgatgatgatgatAT-AGTTAAAGCTATTACTAGGTTTCTATGGTTTCATCC 2063
| |||| | || | |||||| | || ||||||| | | |||| ||||||| ||
Sbjct 350 G-TGTT-A--CTGCTTCTGATATCA-ACCAATCTATTACCCGATATCTACGGTTTCACCC 404
Query 2064 TGTTAATGAATTTGAGCCCTTTT-TAGAGAGTTTAGGTTTGAAGCCGTCAGAGTTTAGTC 2122
|| |||||||| ||| |||||| | ||||||| |||||||||||| | |||| |||||
Sbjct 405 GGTGAATGAATTCGAG-CCTTTTCTTGAGAGTTCAGGTTTGAAGCCCACTGAGTATAGTC 463
Query 2123 ATTTGATTCCTTGTGATAAGATGTT-TTTGAATGAAGATGCTTTTTTGCTGGAGAACTAT 2181
||||| |||| ||||||||| | || || ||| ||||| ||||||||||| |||||| ||
Sbjct 464 ATTTGGTTCCCTGTGATAAGGTCTTCTTGGAA-GAAGAAGCTTTTTTGCTTGAGAACCAT 522
Query 2182 CATGTCTTT-TGGAACTA-TGGAATTGGA-AGGGAGAAGATGGGGAAGATCTTTAAGGAA 2238
||||| ||| || | || ||| || || ||||||| ||||||||||| ||||||
Sbjct 523 CATGT-TTTGTGTTA-TAGTGGTGTT-GACCCTAAGAAGATTGGGAAGATCTTCAAGGAA 579
Query 2239 GCTAGGGAAGTTTTCGGGTATGAAACCGGGGTTTTAGCTTCCAAGATTAAGTCTTATGAG 2298
|||||||||||||| |||||||||||||||||||||||||| ||||||||| | || |||
Sbjct 580 GCTAGGGAAGTTTTTGGGTATGAAACCGGGGTTTTAGCTTCTAAGATTAAGGCGTAAGAG 639
Query 2299 GATTTGGGGTTTAGCAAAT-TGTTTCTATCGAAACTTATAGTTTGTAGCCCAAGTATCTT 2357
|||||||||||||||| || | ||||||||||| ||||| ||||||||||| || |||||
Sbjct 640 GATTTGGGGTTTAGCAGATAT-TTTCTATCGAAGCTTATCGTTTGTAGCCCGAGAATCTT 698
Query 2358 GATTGGGGATATGAATGTTGGACTGGCTAAGGTCATGGAGATGCTGAAAGCTATTGGTTT 2417
||||||| ||| |||||||| ||| ||||||||| | ||| | ||||| | || || ||
Sbjct 699 GATTGGGAATACGAATGTTGAACTTGCTAAGGTCTTAAAGACGTTGAAATCCATGGGGTT 758
Query 2418 TG-GTGTTGATTGGGTAACAGAGAACTTGTCAGAGGAGGTGTCTTATGATTGGAGCTCTA 2476
|| || |||||||||||| |||||| ||||||| |||| | ||| |||||||||||||
Sbjct 759 TGAGT-TTGATTGGGTAATGGAGAACCTGTCAGATGAGGGGCCTTGTGATTGGAGCTCTG 817
Query 2477 TGCATAGATG-TCTAAGTTTTCTTAGAG--ATTTGTATGTTGATGA-AAATGAGCTATGT 2532
||||| | || |||||| || ||||||| || ||| | ||||||| || |||||||||
Sbjct 818 TGCATCG-TGTTCTAAGCTTGCTTAGAGAAATCTGT-T-TTGATGAGGAA-GAGCTATGT 873
Query 2533 -GAGTTAATCAGAAAGATG-CCAAGACTTATTTTCGAGGATTCAGGGGAATGGACATTGA 2590
|| |||||||| ||| || |||||||| |||| ||| |||||||| |||||||| |||
Sbjct 874 GGA-TTAATCAGGAAG-TGTCCAAGACTGGTTTTTGAGAATTCAGGGAAATGGACAGTGA 931
Query 2591 TTCTAGCTGGGTTTGAAGCAAAACTAGGGTCATCCAGAAGTGAACTCTCTTCGTTGTTTC 2650
|||||| |||||||||| ||||||| |||||||| ||||||||||| | || ||||||||
Sbjct 932 TTCTAGTTGGGTTTGAAACAAAACTCGGGTCATCTAGAAGTGAACTATGTTTGTTGTTTC 991
Query 2651 AGAAATTCCCTCAG-TGTCAGAGTTTAG-GTAAATTTGTTTTGAATTTAAGGCATTGCTT 2708
| |||||||| | | | ||| || ||| | |||| ||||| |||| ||||||| |||||
Sbjct 992 AAAAATTCCCGCTGAT-TCA-AG--TAGAG-AAATGTGTTTCGAATCTAAGGCAGTGCTT 1046
Query 2709 CTTGTTTC-TGAAAGATATTGAGATGGATGATGACGAGA-TCGGTAAGATTTTCCGTT-T 2765
|||| ||| ||||||| || |||||||| ||||| |||| || |||| ||||||||| |
Sbjct 1047 CTTG-TTCTTGAAAGAGATCGAGATGGAAGATGATGAGATTC-ATAAGGTTTTCCGTTCT 1104
Query 2766 GCACTCTTTGTGGATTGGTGT-ATCTCGTTTGAAGCAAACCAGTACCTTACTTATCA-AT 2823
||||| | |||| ||||| | || | | || ||| ||||||||| ||| ||| | | |
Sbjct 1105 -CACTCCTGGTGGCTTGGT-TCATGTAGGTTAAAGAAAACCAGTAGCTTGCTTGT-ATTT 1161
Query 2824 TTGAAGGGTGGGAAAGGGCGGCTATGTCAAGTCATTCAAGAAAATCCAGAAGAGATGAAA 2883
||||||| ||||||| ||| | ||||| ||||||||||||| ||||| |||||||||
Sbjct 1162 TTGAAGGCTGGGAAAACCCGGGTTTGTCAGGTCATTCAAGAAAGCCCAGAGGAGATGAAA 1221
Query 2884 AAATGGATTATGGGGTTAAGAGTCCAGCCATTACCAGCTACTGGATACAAGGTAAACACA 2943
||||||| ||||||| || | |||||||| |||||||||| ||| ||| ||| |
Sbjct 1222 AAATGGACAATGGGGTCAAAAATCCAGCCACTACCAGCTAC------CAACGTAGACATA 1275
Query 2944 AAGTCGAAAAC-AATGAAGACTCAGTTCTTGTTAGACCTCGGATACAAAGAAAACTCTGA 3002
| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1276 GACTCG-AAACTAATGAAGACTCAGTTCTTGTTAGACCTCGGATACAAAGAAAACTCCGA 1334
Query 3003 GGAAATGGAGAGAGCACTCAAGAATTTCCGTGGCAAAGGATCTGAACTCCGAGAGAGATT 3062
|||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1335 GGAAATGGAGAGTGCACTCAAGAATTTTCGTGGCAAAAGATCTGAACTCCGAGAGAGATT 1394
Query 3063 TAATGTCCTCGTGAGTTTCGGTCTTACTGAGAAAGATGTCAAAGATATGGTGAAAGCATG 3122
|||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1395 TAATGTCCTCGTAAGTTTGGGTTTTACCGAGAAAGATGTCAAAGATATGGTGAAAGCATG 1454
Query 3123 TCCTAGTATCCTCACCCAGGCATGTGATAT-CTTAGAATCAAAGGTGAACTACCTTGTAA 3181
||||| ||| ||| ||||| | |||||||| || |||||||||||||||||||||| |||
Sbjct 1455 TCCTACTATGCTCTCCCAGACCTGTGATATACT-AGAATCAAAGGTGAACTACCTTATAA 1513
Query 3182 AGGAATTAGGTTATCCGCTTTCGACATTGGT-GACTTTCCCAACATGTCTTAA-GTACAC 3239
| |||||||||||||| | |||||| ||||| || |||||| ||||| |||| || |||
Sbjct 1514 ACGAATTAGGTTATCCTCATTCGACTTTGGTAGA-TTTCCCTTCATGT-TTAAAGTTCAC 1571
Query 3240 TCTTCAGCGGATGAAGCTTC-GATTTTCAATGTTCTCTTGGCTTCAAGATCGAGGAAAAG 3298
|||||||||||||||||| | ||||| ||||||||||||||||||||| ||||||||||
Sbjct 1572 TCTTCAGCGGATGAAGCT-CAGATTTGCAATGTTCTCTTGGCTTCAAGCCCGAGGAAAAG 1630
Query 3299 CAGACC-CAAAGCTTCAA-GTTAGTACTATACTTG-TGTGCTCGGACAA 3344
||||| ||| | | ||| ||||||||||| || | | |||||||||||
Sbjct 1631 TAGACCGCAA-GAT-CAAAGTTAGTACTATGCTCGCT-TGCTCGGACAA 1676
Score = 1059 bits (573), Expect = 0.0
Identities = 1194/1483 (81%), Gaps = 85/1483 (6%)
Strand=Plus/Plus
Query 244 ATGTTGGATTATTTCTATTC-CACTAGGGGTTTACAGTATATGGTTGCAGAGAGTATGAG 302
||||| ||||| ||||| || || || ||||| |||| | ||||||| |||||||||||
Sbjct 1894 ATGTTTGATTACTTCTA-TCAAACGAGAGGTTTGCAGTTTCTGGTTGCTGAGAGTATGAG 1952
Query 303 CAAGAACAG-TCCAATTTTTATTGATAATCTTTTGAAGAAAG-T---T-GAT-TG-TGTT 354
| ||| | ||| |||||| |||||||||||||||| ||| | | | | || ||||
Sbjct 1953 TAGGAA-TGCTCCTGTTTTTAATGATAATCTTTTGAAG-AAGCTAAATGGTTGTGATGTT 2010
Query 355 -ACTGCTTCTGAT-AT-CA-ACCAATCTATTACTCGATATCTACGGTTTCACCCTGTCAA 410
| || | |||| || | || | |||||| | | |||| ||||||| ||||| ||
Sbjct 2011 GA-TGATGATGATGATGTAGTTAAAGCCATTACTAGGTTTCTATGGTTTCATCCTGTGAA 2069
Query 411 TGAATTCGAGCCTTTCCTT-GAGAGTTCAGGTTTGAATCCCAGT--GAGTATAATCATTT 467
|||||| |||||||| || ||||||| ||||||||| || || |||| || ||| ||
Sbjct 2070 TGAATTTGAGCCTTT-TTTAGAGAGTTTAGGTTTGAA-GCC-GTCAGAGTTTAGTCACTT 2126
Query 468 GGTTCCCTGTGATAAGGTCTTCTTGGATGAAGAAGGC-TTTTTGCTGGAGAACCATCATG 526
| |||| ||||||||| | || ||| |||||| | || |||||| ||||||| ||||||
Sbjct 2127 GATTCCTTGTGATAAGATGTTTTTGAATGAAG-ATGCTTTTTTGTTGGAGAATTATCATG 2185
Query 527 T-TTTGTGTTA-TAGTGGTGTT-GACCCTA-AGAGGATTG-GGAAGATCTTCAAGGAAGC 581
| ||| || | || ||| || || | ||| || || |||||||||| ||||||||
Sbjct 2186 TGTTT-TGGAACTA-TGGAATTGGA--AGAGAGAAGA-TGAGGAAGATCTTTAAGGAAGC 2240
Query 582 TAGGGAAGTTTTTAGTTATGAAACCGGGGTTTTAGCTTCTAAGATTAAGGCGTATGAGGA 641
|||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2241 TAGGGAAGTTTTCGGGTATGAAACCGGGGTTTTAGCTTCCAAGATTAAGGCTTATGAGGA 2300
Query 642 TTTGGGGTTTAGC-AGATTGTTTCTATCTAAGCTTATCGTTTGTAGTCCGAG-AGTCTTG 699
||||||||||||| || ||||||||||| || |||||||||||||| ||||| | | |||
Sbjct 2301 TTTGGGGTTTAGCAAG-TTGTTTCTATCGAAACTTATCGTTTGTAGCCCGAGTA-TTTTG 2358
Query 700 A-TGGGTCATACGAATATTGAACTGGTTCAGGTTGTAAAGACGTTGCAATCT-TTAGGGT 757
| |||| || ||||| ||| ||||| |||| | ||| | || || || ||| | |
Sbjct 2359 ATTGGG-AATGCGAATGTTGGACTGGCGAAGGTCATGGAGATGCTGAAAGCTATTA-GTT 2416
Query 758 TTGAGT-TCGAGTGGGTAATGGAAAACTTGTCAGATGAGG-GAC--CTGATTGGAGCTCT 813
||| || |||| ||||||| || ||||||||||| |||| | | |||||||||||||
Sbjct 2417 TTG-GTGTCGATTGGGTAACAGAGAACTTGTCAGAGGAGGTGTCTTATGATTGGAGCTCT 2475
Query 814 GTGCAT-CGTGTTTTAAGCTTGCTTAGAGAAATCTGTTTTGATGAGGAA-AAACTATATG 871
||||| ||| | |||| || || ||||| || ||| ||||||| ||| | ||| ||
Sbjct 2476 ATGCATAGGTG-TCTAAGTTTTCTCAGAGATATGTGTGTTGATGA-GAATGAGCTACGTG 2533
Query 872 GGTTAATCAGGAA-CTGTCCAAGTTTGCTTTTTGAGAATTCAGGGAAATGGACAGGGATT 930
|||||||||||| | | |||| | |||| ||| |||||||| |||||||| ||||
Sbjct 2534 AGTTAATCAGGAAGC-GGCCAAAACTAATTTTCGAGGATTCAGGGGAATGGACAATGATT 2592
Query 931 CTAGTTGGGTTTGAAACAAAGCTTGGGGCATCTAGAAGTGAACTATGTTCGTTGTTTCAG 990
|||| |||||||||| |||| || ||| |||| ||||||||||| | |||||||||||||
Sbjct 2593 CTAGCTGGGTTTGAAGCAAAACTAGGGTCATCCAGAAGTGAACTCTCTTCGTTGTTTCAG 2652
Query 991 AAATTCCCGCTGATTCA-AGTAGA-G-AAATGTGTTTCGAATCTAAGGCAGTGCTTCTTG 1047
|||||||| | || ||| |||| | | |||| |||||||||| ||||||| |||||||||
Sbjct 2653 AAATTCCCACAGAGTCAGAGTATAGGTAAATTTGTTTCGAATTTAAGGCATTGCTTCTTG 2712
Query 1048 TTCTTGAAAGAGATCGAGATGGAAGATGATGAGATTC-ATAAGGTTTTCCGTTCT-CATT 1105
||| ||||||| || || ||||| | |||||| | || |||| ||||||||| | ||||
Sbjct 2713 TTCCTGAAAGATATTGATATGGAGGCTGATGA-AATCGGTAAGATTTTCCGTT-TGCATT 2770
Query 1106 CCTGGTGGCTTGGT-TCATGTAAG-TTAAAGAAAACCAGTAGCTTGCTTGTGTTTTTG-A 1162
| | |||||||||| | | | | || ||| ||||||||| ||| ||| | |||| |
Sbjct 2771 CTTCGTGGCTTGGTGT-AACT-CGTTTGAAGCAAACCAGTACCTTACTTATCAATTTGAA 2828
Query 1163 AGGCTGGTAAAACTCGGGTTTGTCAGGTCATTCAAGAAAACCCTGAAGAGATGAAAAAAT 1222
||| ||| ||| ||| ||||||| |||||||| ||||| || ||||||||||||||||
Sbjct 2829 AGG-TGGGAAAGGGCGGCTTTGTCAAGTCATTCAGGAAAATCCAGAAGAGATGAAAAAAT 2887
Query 1223 GGACAAT-GGGTTCAAAAATCCAGCCGTTACCAGCTAC------CAACGTAGACATTGAG 1275
||| || ||||| || | ||||||||||||||||||| ||| ||||||| ||
Sbjct 2888 GGATTATGGGGTT-AAGAGTCCAGCCGTTACCAGCTACTGGATGCAAGGTAGACACAAAG 2946
Query 1276 TCGAAATCAATGAAGACTCAGTTCTTATTAGACCTCGGATACAAAGAAAACTCAGAGGAA 1335
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2947 TCGAAAACAATGAAGACTCAGTTCTTGTTAGACCTCGGATACAAAGAAAACTCTGAGGAA 3006
Query 1336 ATGGAGACAGCAATGAAGAATTTCCGTGGTAAAGGATCAGAACTCCGAGAGAGATTTAAT 1395
||||||| |||| | |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 3007 ATGGAGAGAGCACTCAAGAATTTCCGTGGCAAAGGATCTGAACTCCGAGAGAGATTTAAT 3066
Query 1396 GTCCTCGTAAGTTTGGGTTTTACCAAGAAAGATGTCAAAGATATGGTGAAAGCATGTCCT 1455
|| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3067 GTGCTCGTGAGTTTTGGTTTTACCGAGAAAGATGTCAAAGATATGGTGAAAGCATGTCCT 3126
Query 1456 ACTATGCTCTCCCAGACCTGTGATATCCTAGAATCAAAGGTGAACTACCTTATAAAGGAA 1515
| ||| ||||||||| | ||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 3127 AGTATCCTCTCCCAGGCATGTGATATCTTAGAATCAAAGGTTAACTACCTTATAAACGAA 3186
Query 1516 TTAGGTTATCCGCTTTCGACTTTGGTGGA-TTTCCCTTCATGT-TTAAAGTTCACTCTTC 1573
|||||| ||||||||||||| |||||| | |||||| ||||| |||| || ||||||||
Sbjct 3187 TTAGGTCATCCGCTTTCGACATTGGTG-ACTTTCCCAACATGTCTTAA-GTACACTCTTC 3244
Query 1574 AGCGGATGAAGCT-CAGATTTGCAATGTTCTCTTGGCTTCAAGCCCGAGGAAAAGTAGAC 1632
||||||||||||| | ||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 3245 AGCGGATGAAGCTTC-GATTTGCAATGTTCTCTTGGCTTCAAGATCGAGGAAAGGCAGAC 3303
Query 1633 CGCAA-GATCAAAGTTAGCACAATGCTCGCT-TGCTCGGACAA 1673
| ||| | | |||||| || || || | | ||||| |||||
Sbjct 3304 C-CAAAGCTTGCAGTTAGTACTATACTTG-TGTGCTCTGACAA 3344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129357690627
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5