BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06820.1
Length=2424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940126 jgi|Araly1|940126|scaffold_600670.1 3736 0.0
> Ahg940126 jgi|Araly1|940126|scaffold_600670.1
Length=2242
Score = 3736 bits (2023), Expect = 0.0
Identities = 2174/2247 (97%), Gaps = 10/2247 (0%)
Strand=Plus/Plus
Query 106 AGTCGAGAGAGATTATAGTGATGAAAACCAAACAGCAATTGCGATTCCTCGCTACAATTC 165
|||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AGTCGAGAGAGATTCTAGCGATGAAAACCAAACAGCAACTGCGATTCCTCGCTACAATTC 60
Query 166 TGCTCACGACGATTCTATTTGTTCTGGCGAAGACTGATACTGATCCGCTTGAAGTTTTGG 225
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTTCACGACGATTCTATTTGTGCTGGCGAAGACTGATACTGATCCGCTTGAAGTTTTGG 120
Query 226 CTCTTCAAGATCTCTACAAGTCTCTGAGAAATCCAGA-ACAGCTGAGAGGATGGAGATTA 284
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 121 CTCTTCAAGATCTCTACAAGTCTCTGAGAAATCCAGAGA-AGCTGAGAGGATGGAGATTG 179
Query 285 GAGGGTGGAGATCCATGCGGAGAAGCCTGGCTGGGAATTTCTTGTTCTGGTTCTTCTATA 344
||||||||||||||||| |||||||||||| | ||| ||||||||||||| |||||||||
Sbjct 180 GAGGGTGGAGATCCATGTGGAGAAGCCTGGATCGGAGTTTCTTGTTCTGGCTCTTCTATA 239
Query 345 GTAGACCTACAACTGCGAGAGTTAAAGCTTTTGGGCAGCCTTGGAAACCAGCTTCAACAT 404
||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 240 GTAGACCTACAACTGAGAGAGTTAAAGCTTTTGGGAACCCTTGGAAACCAGCTTCAACAT 299
Query 405 CTCCACAATTTGAAGATTCTGGATGTAAGCTTCAATAACCTTGAGGGTGAAATTCCGTTT 464
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct 300 CTCCACAATTTGAAGATTCTGGATGTTAGCTTCAATAACCTTGAAGGCGAAATTCCTTTT 359
Query 465 GGCTTGCCTCCTAACGCTACTCATATAAACATGGCTTACAACAATCTGACCCAAAGTATC 524
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 GGCTTGCCTCCAAACGCTACTCATATAAACATGGCTTACAATAATCTGACCCAAAGTATC 419
Query 525 CCTTTTTCCTTACCTCTTATGACATCTCTTCAGTCTTTAAATTTGAGCCATAATTCATTA 584
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 420 CCTTTTTCCTTACCTCTTTTGGCATCTCTTCAGTCTCTAAATTTGAGCCATAATTCATTA 479
Query 585 TCTGGACCTCTTGGAAATGTGTTTTCTGGGTTACAGATTAAAGAAATGGATCTGTCATTC 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTGGACCTCTTGGAAATGTGTTTTCTGGGTTACAGATTAAAGAAATGGATCTGTCATTC 539
Query 645 AATAACCTGACGGGAGATCTACCGAGCTCTTTTGGGA-CTCTAATGAATCTGACTTCACT 703
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 540 AATAACCTGACGGGAGATCTACCAAGCTCTTTT-GGATCTCTAATGAATCTGACTTCACT 598
Query 704 GTACCTCCAGAACAACAGATTAACAGGATCAGTCATATATCTCGCGGATCTTCCTTTAGC 763
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 599 GTACCTCCAGAACAACAGATTAACAGGATCAGTCATCTATCTCGCGGATCTTCCTTTAGC 658
Query 764 TGACCTGAACATCGAAGATAACCAGTTCAGTGGTATTATCCCAAGTCATTTTCAGTCCAT 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGACCTGAACATCGAAGATAACCAGTTCAGTGGTATTATCCCAAGTCATTTTCAGTCCAT 718
Query 824 TCCTCATCTGTGGATTTGGGGAAACAAGTTCCATGTAGAGCCCAACTATAAACCGTGGAA 883
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 719 TCCTCATCTGTGGATTTGGGGAAACAAGTTCCATGTAGAGCCCAACTATAAACCTTGGAA 778
Query 884 GTTCCCATTGGACGTCAGACCACTGATACAAAATGATACTGGCTATCCAACAACAGAGTC 943
|||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 779 GTTCCCTTTGGACGTCAGACCGTTGATACAAAATGCTACTGGCTATCCAACAACAGAGTC 838
Query 944 AAGTGCCATTATGAATTTTCCCAGACCTGAGACTCAGAAGGTCAAAAAGAAGAAGAAAGG 1003
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 839 AAGTGCCATTATGAACTTTCCCAG-CC-----CTCAGAAGGTCAAAAAGAAGAAGAAAGG 892
Query 1004 CATAGGAGCAGGAAGTACCTTTTTACTGGTTGGTGGGTTAGCTTTGCTGGGAACTTTCTT 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CATAGGAGCAGGAAGTACCTTTTTACTGGTTGGTGGGTTAGCTTTGCTGGGAACTTTCTT 952
Query 1064 TGCACTTTTCGCAGTTCGCATGAATCATCGACGTGCACAAAACCTTGCTGCTATTCACAG 1123
||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 953 TGCACTTTTCGCAGTCCGCATGAATCATCGACGAGCACAAAACCTTGCTGCTAGTCACAT 1012
Query 1124 AAGCAACAATAGCATAGCATACTCTCTTCCAGTCAGTACAGGCCGAGAATATCCTGTTGC 1183
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1013 AAGCAACAATAGCACAGCATACTCTCTTCCAGTCAGTACAAGCCGAGAATATCCTGTTGC 1072
Query 1184 AACTGAAGATAACCCACAGATTAAAAGGTTCCAGCCACCACCAGCTCCCCAACTCAGACA 1243
||||||||||||||||||||| |||||| ||||||| ||||||| ||| || ||||||||
Sbjct 1073 AACTGAAGATAACCCACAGATGAAAAGGGTCCAGCCCCCACCAGTTCCACAGCTCAGACA 1132
Query 1244 TTTACCTTCTCCACCTGTCAGAATCGATAAATCTGCAAGAAGAAAGAGCTTCTCTGCAAC 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1133 TTTACCTTCTCCACCTGTCAGAATCGATAAATCTGCAAGAAGAAAGAGCTTCTCTGCCAC 1192
Query 1304 ATGTCAATATCCATCGTTCGCTAAGCTTTTCTCAGCTGCAGAGCTTCAACTGGCAACTAA 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 ATGTCAATATCCATCGTTCGCTAAGCTTTTCTCAGCTGCAGAGCTTCAACTGGCAACTAA 1252
Query 1364 CTGTTTCAGTGAGGAAAATCTACTCGGAGAGGGTCCTCTTGGTTCTGTTTACAGAGCAAA 1423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CTGTTTCAGCGAGGAAAATCTACTCGGAGAGGGTCCTCTTGGTTCTGTTTACAGAGCAAA 1312
Query 1424 GTTGCCTGATGGTCAGTTTGCCGTCGTCAGAAACATCCCAATGTCTTCGCTATCTTTACA 1483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1313 GTTGCCTGATGGTCAGTTTGCCGTCGTCAGAAACATCCCAATGTCTTCGCTGTCTTTACA 1372
Query 1484 TGAAGAGGAACAGTTTACTGAAGTGCTTCAGACAGCCTCCAAACTAAGACACCCAAACAT 1543
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1373 TGAAGAGGAACAATTTACTGAAGTACTTCAGACAGCCTCCAAACTAAGACACCCAAACAT 1432
Query 1544 TGTTACACTTCTCGGTTTCTGCATTGAGAATGGAGAGCATCTTCTTGTCTATGAGTATGT 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TGTTACACTTCTCGGTTTCTGCATTGAGAATGGAGAGCATCTTCTTGTCTATGAGTATGT 1492
Query 1604 TGGCCATTTGTCGTTGTACAATGCTATGCATGATGAGGTATACAAGCCACTTTCTTGGGG 1663
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TGGGCATTTGTCGTTGTACAATGCTATGCATGATGAGGTATACAAGCCACTTTCTTGGGG 1552
Query 1664 CTTGCGTCTCCGCATTGCTATTGGAGTTGCCCGAGCTCTGGACTATTTGCACTCGTCGTT 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 CTTGCGTCTCCGCATTGCTATTGGAGTTGCCCGAGCTCTGGACTATTTGCACTCGTCGTT 1612
Query 1724 TTGCCCTCCTATAGCCCATAGCGATCTGAAAGCAACAAACATCTTACTAGACGAAGAACT 1783
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1613 TTGCCCTCCTATAGCCCATAGCGATCTGAAAGCAACAAACATCTTACTTGACGAAGAACT 1672
Query 1784 TACACCTCGTATTGCTGACTGTGGGCTTGCTAGTTTAAGGCCACTTACAAGCAACAGTGT 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 TACACCTCGTATTGCTGACTGTGGGCTTGCTAGTTTAAGGCCACTTACAAGCAACAGTGT 1732
Query 1844 TAAACTTCGGGCTTCAGAAATAGCGATACAAAACACTGGCTACATAGCACCAGAACATGG 1903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 TAAACTTCGGGCTTCAGAAATAGCGATACAAAACACTGGCTACATAGCACCAGAACATGG 1792
Query 1904 ACAACCAGGAAGCAGTGGCACAAAGAGTGACACTTATGCACTGGGAGTGCTACTCTTAGA 1963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1793 ACAACCAGGAAGCAGTGGCACAAAGAGTGACACTTATGCACTGGGAGTGCTACTCTTGGA 1852
Query 1964 ACTGTTAACAGGAAGGAAAGCATTTGACAGCTCACGACCCCGAGGAGAACAGCTACTGGT 2023
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1853 ACTGTTAACAGGAAGGAAAGCATTTGACAGCTCACGTCCCCGAGGAGAACAGCTACTGGT 1912
Query 2024 GAAATGGGCATCAACCAGACTTCATGACAGGCGAAGCTTAGAACAGATGATTGATGGAGG 2083
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1913 GAAATGGGCATCAACCAGACTGCATGACAGGCGAAGCTTAGAACAGATGATTGATGGAGG 1972
Query 2084 CATAGCCGGCACATTCTCCTCAAGAGTCGCCTCACAATACGCAGACATTATCTCCCTATG 2143
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1973 CATAGCTGGCACATTCTCCTCAAGAGTCGCTTCACAATACGCAGACATAATCTCCCTATG 2032
Query 2144 CACTCAGGCAGAGAAGGAGTTCAGACCACCGGTTTCAGAAATAGTGGAAGCCCTCACTGC 2203
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2033 CACTCAGGTAGAGAAGGAGTTCAGACCAGCGGTTTCAGAAATAGTGGAAGCCCTCACTGC 2092
Query 2204 GCTGATACAGAAACAGAACAAGGAAGCAAGCAGTAGTGTAGCAGACAAGACCGACCCTTT 2263
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 ACTGATACAGAAACAGAACAAGGAAGCAAGCAGTAGTGTAGCAGACAAGACCGACCCTTT 2152
Query 2264 TAGTAAATCTTTCTGCTCAACACGCACACGCTTCATCTCCTCACCTACCTTCAGCTACCT 2323
||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct 2153 TAGTAAATCTTTCTGCTCATCACGCACTCGCTTCATCTCCTCTCCTACCTTCAGCTACCT 2212
Query 2324 CTCCTCTTGAACATTTTCTGTATCTCT 2350
|||||||||| ||||||||||||||||
Sbjct 2213 CTCCTCTTGACCATTTTCTGTATCTCT 2239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91340407510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5