BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06830.1
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487496 jgi|Araly1|487496|fgenesh2_kg.6__630__AT5G06830.1 2902 0.0
Ahg948648 jgi|Araly1|948648|scaffold_800535.1 148 1e-34
Ahg923925 jgi|Araly1|923925|scaffold_105206.1 143 5e-33
> Ahg487496 jgi|Araly1|487496|fgenesh2_kg.6__630__AT5G06830.1
Length=1827
Score = 2902 bits (1571), Expect = 0.0
Identities = 1747/1831 (95%), Gaps = 16/1831 (1%)
Strand=Plus/Plus
Query 1 AAAACGTTAAACTGTGTGAGA--CTTCGGAGATAAAATTT-CCCAGAAAGCGTGAAAGGT 57
|||||||||||||| | |||| |||||||||| ||||| |||||||||||| |||||
Sbjct 1 AAAACGTTAAACTGAGAGAGACTCTTCGGAGAT--AATTTCCCCAGAAAGCGTCTAAGGT 58
Query 58 TAACCG------GAAGAAAATGCCGTCACAAGATGATGTTCAAAATCTTCCAATCGATAT 111
| ||| || ||||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 59 TTCCCGTAAAATTAAAAAAATGCCGACACAAGACGATGTTCAAAATCTTCCAATCGACAT 118
Query 112 CACCTTCTCTCGTCTCGGAGAATGGTTGGTGGATCGGAAGAGAATTCCGGCGGATTGGAG 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CACCTTCTCTCGTCTCGGAGAATGGTTGGTGGATCGGAAGAGAATTCCGGCGGATTGGAG 178
Query 172 GAAGAGGGTTGCTGTGATCAGAGTCAAAATCTTAAAAGAGTTCTCTTCTTTGCCTAAAGA 231
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 179 GAAGAGGGTTGCTGCGATCAGAGTCAAAATCTTAAAAGAGTTTTCTTCTTTGCCTAAAGA 238
Query 232 GATCGATCCATTCTTTCAAACCCTAGATCCTGAAGTGATCGGTTACTTGGAGGTCAAAAA 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 GATCGATCCATTCTTTCAAACCCTAGATCCTGAAGTGATCGGTTACTTGGAGGTGAAAAA 298
Query 292 GGTGTATGAGATTCTCCTGAAGACAACTCCGGAAAGCCGCAACATCTTTGGTCGACTTTC 351
| | ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 299 GATATATGAGATTCTCCTGAAGACAACTCCGGAAAGCCGTAACATCTTTGGTCGGCTTTC 358
Query 352 GGGTGCTTCTGGTGTTTGGGAAGCAATTGTTCGTGCGTTTGAAAAAGATCACATTTATCT 411
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 GGGTGCTTCTGGAGTTTGGGAAGCTATTGTTCGTGCGTTTGAAAAAGATCACATTTATCT 418
Query 412 TGGGGAGGCAGCTCAGATAATAATTCAGAATGTTAATTACGAAATCCCTTATCTGAAAAA 471
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 419 TGGGGAGGCAGCTCAGATTATAATTCAGAATGTCAATTACGAAATCCCTTACCTGAAAAA 478
Query 472 GCAAGTGCAAAAGGTTCAGCAACAAATGACAGAACTTGATCGTAAAGAAGCTGATATCAA 531
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 479 GCAAGTGCAAAAGGTTCAGCAACAAATGGCCGAACTTGATCGTAAAGAAGCTGATATCAA 538
Query 532 AAGGAGCGTTGCACTCTCAGCAACAAAATACGAGGATGCTTGCCGAGAGCTTGGATTGCA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAGGAGCGTTGCACTCTCAGCAACAAAATACGAGGATGCTTGCCGAGAGCTTGGATTGCA 598
Query 592 GGGAAACAATGTGAGGCGTGAGCTTTTGGAGACTGCGAGTTCGCTTCCTAGTACCTTTAG 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGGAAACAATGTGAGGCGTGAGCTTTTGGAGACTGCGAGTTCGCTTCCTAGTACCTTTAG 658
Query 652 CAAGATTCTGGAAGTTATCAACAGTGACTCAGTAACAGGGGCAATGGAGTACTACTCTGC 711
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 659 TAAGATTCTGGAAGTTATCAACAGTGACTCAGTAACAGGGGCTATGGAGTACTACTCCGC 718
Query 712 CTATGTTCAAGATGTTCATACTGAGAAAGATAAGCCTTTGAGGATTGTCTTACAAAACCT 771
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 719 CTATGTTAAAGATGTTCATACTGAGAAAGATAAGCCTTTGAGGATTGTTTTACAAAACTT 778
Query 772 GAAATACATTCGTGAAAACCCTCCATCATTAAGCGTTTTTGGGGACTCTGAAGGTCTCGA 831
|||| ||||||||||||||||||||||||||||||||| |||| |||||| | ||| ||
Sbjct 779 GAAAGGCATTCGTGAAAACCCTCCATCATTAAGCGTTTTGGGGGGCTCTGACGCTCTTGA 838
Query 832 TGCTGATAATATTCAGTCATCTGAGAATGCAAATGGTACAGATGCGGCTGCAGACAGCAT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGCTGATAATATTCAGTCATCTGAGAATGCAAATGGTACAGATGCGGCTGCAGACAGCAT 898
Query 892 TGATTGGGATATTACGGTTGAGACTCCTGAGATAGATTGGGATGTTAGTATGGTAGAAGA 951
|||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 899 TGATTGGGATATTACGCTTGATACTGCTGAGATAGATTGGGATGTTAGTATGGTAGAAGA 958
Query 952 AGTTGATAGTGGAAATGATCTAGGTTCATATGAAATTGTCAATGCCAGCGATATTCCTGA 1011
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 959 AGTTGATAGTGTAAATGATCTAGGTTCATATGAAATTGTCAATGCCAGTGATATTCCTGA 1018
Query 1012 GAATTCTCCATTTAAAGTGGAAGAAAGCCAAGGCCTTGAGGTTGATGTTTCTGAGATTTC 1071
|| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1019 GAGTTCACCATTTAAAGTGGAAGAAAGCCAAGGCCCTGAGGTTGATGTTTCTGAGATATC 1078
Query 1072 TTGGGATGTAAGTGTTGAAACACCTCAGGTAGAAGAAATAGGTGATTCAGCTTTGCTAGA 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTGGGATGTAAGTGTTGAAACACCTCAGGTAGAAGAAATAGGTGATTCAGCTTTGCTAGA 1138
Query 1132 ATCAAACCAGACACAGTTGACAGATTCTACAACTCAAGTCTTAGGGAGTGGAGGAGAGAG 1191
|||||| ||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1139 ATCAAATCAGACACCGTTGGCAGATTCTACAACCCAAGTCTTAGGAAGTGGAGGAGAGAG 1198
Query 1192 GAGCCAGCTGTTGGAGACAGAATATAGGAATAAGATCCTTGATGATTTGTATGAGGTCAA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GAGCCAGCTGTTGGAGACAGAATATAGGAATAAGATCCTTGATGATTTGTATGAGGTCAA 1258
Query 1252 GGCATTTTTGAACCAGCGTTTGATAGAACTGAGAAATGAAGATACGCTGTCCTTGCAACA 1311
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1259 GGCATTTTTAAACCAGCGTTTGATAGAACTGAGAAATGAAGATACTCTGTCCTTGCAACA 1318
Query 1312 CCACGTGCAAGCAGTCT-CCCCCATGGTTCTTCAGCAGTATTCTCCTGAAACCATAGAGC 1370
||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1319 CCACGTGCAAGCAGT-TGCCCCCATGGTTCTTCAGCAGTATTCTCCCGAAACCATAGAGC 1377
Query 1371 CAATGGTGGTTGACATCTCCATGGCCATTTCATTGCTAACAAACAAGAAATCTCGGGATC 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CAATGGTGGTTGACATCTCCATGGCCATTTCATTGCTAACAAACAAGAAATCTCGGGATC 1437
Query 1431 TGATCATGATCCTCAACTCCAAAAGATTCCTAGATAGGCTTGTTTCAGAGCTGGAGGAGA 1490
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1438 TGATCATGATTCTCAACTCCAAAAGATTTCTAGATAGGCTTGTTTCAGAGCTGGAGGAGA 1497
Query 1491 AGAAGCACCGTGAAGTGAAGTTAAGAGAGAGCTTGAAAGATGTGGGTAGAAGACGCATGG 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AGAAGCACCGTGAAGTGAAGTTAAGAGAGAGCTTGAAAGATGTGGGTAGAAGACGCATGG 1557
Query 1551 AGCTGCAGAATTCACTTTCTGCTATATGGCCAAAACAGGAAGCTGCACTTTCGAAAACAA 1610
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1558 AGCTGCAGAATTCACTCTCTTCTATATGGCCAAAACAGGAAGCTGCACTTTCGAAGACAA 1617
Query 1611 GAGAACTCAAGGAGCTATGTGAGACAAGTCTCTCTTCCATGTTTGATGGAAGACCTGTGA 1670
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GAGAACTGAAGGAGCTATGTGAGACAAGTCTCTCTTCCATGTTTGATGGAAGACCTGTGA 1677
Query 1671 ATATAAGAGGAGAGATCAATACATTGTTGAACGCTGGGGTTTCTGCTTAGTTTGATCTTT 1730
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1678 ATATAAGAGGAGAGATCAATACATTGCTGAACGCAGGGGTTTCTGCTTAGTTTGATCTTT 1737
Query 1731 GGGATTTGCTAGAAAACTTAGTTTCAGTACACCAAGTGACCCT-GTTTCTTGCTTTAGGA 1789
|||||| |||||||||||||||||||| |||||||||||| || |||| || ||||||||
Sbjct 1738 GGGATTGGCTAGAAAACTTAGTTTCAGAACACCAAGTGACTCTTGTTTATTACTTTAGGA 1797
Query 1790 TTTTGCCTTGTTTCAAACTCTT-TTGTATTT 1819
|||||||||||||||||||||| || |||||
Sbjct 1798 TTTTGCCTTGTTTCAAACTCTTCTT-TATTT 1827
> Ahg948648 jgi|Araly1|948648|scaffold_800535.1
Length=409
Score = 148 bits (80), Expect = 1e-34
Identities = 92/98 (94%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 126 TCGGAGAATGGTTGGTGGATCGGAAGAGAATTCCGGCGGATTGGAGGAAGAGGGTTGCTG 185
||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 14 TCGAAGAATGGTTAGTGGATCGGAAGAGAATTCCGGCGGACTGGAGGAAGAGGGTGGCTG 73
Query 186 TGATCAGAGTCAAAATCTTAAAAGAGTTCTCTTCTTTG 223
||||||||||||||||||||||||||||||| |||||
Sbjct 74 CGATCAGAGTCAAAATCTTAAAAGAGTTCTCTGCTTTG 111
> Ahg923925 jgi|Araly1|923925|scaffold_105206.1
Length=409
Score = 143 bits (77), Expect = 5e-33
Identities = 91/98 (93%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 126 TCGGAGAATGGTTGGTGGATCGGAAGAGAATTCCGGCGGATTGGAGGAAGAGGGTTGCTG 185
||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 14 TCGAAGAATGGTTAGTGGATCGGAAGAGAATTTCGGCGGACTGGAGGAAGAGGGTGGCTG 73
Query 186 TGATCAGAGTCAAAATCTTAAAAGAGTTCTCTTCTTTG 223
||||||||||||||||||||||||||||||| |||||
Sbjct 74 CGATCAGAGTCAAAATCTTAAAAGAGTTCTCTGCTTTG 111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68295809285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5