BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06830.1 Length=1819 Score E Sequences producing significant alignments: (Bits) Value Ahg487496 jgi|Araly1|487496|fgenesh2_kg.6__630__AT5G06830.1 2902 0.0 Ahg948648 jgi|Araly1|948648|scaffold_800535.1 148 1e-34 Ahg923925 jgi|Araly1|923925|scaffold_105206.1 143 5e-33 > Ahg487496 jgi|Araly1|487496|fgenesh2_kg.6__630__AT5G06830.1 Length=1827 Score = 2902 bits (1571), Expect = 0.0 Identities = 1747/1831 (95%), Gaps = 16/1831 (1%) Strand=Plus/Plus Query 1 AAAACGTTAAACTGTGTGAGA--CTTCGGAGATAAAATTT-CCCAGAAAGCGTGAAAGGT 57 |||||||||||||| | |||| |||||||||| ||||| |||||||||||| ||||| Sbjct 1 AAAACGTTAAACTGAGAGAGACTCTTCGGAGAT--AATTTCCCCAGAAAGCGTCTAAGGT 58 Query 58 TAACCG------GAAGAAAATGCCGTCACAAGATGATGTTCAAAATCTTCCAATCGATAT 111 | ||| || ||||||||| ||||||| ||||||||||||||||||||||| || Sbjct 59 TTCCCGTAAAATTAAAAAAATGCCGACACAAGACGATGTTCAAAATCTTCCAATCGACAT 118 Query 112 CACCTTCTCTCGTCTCGGAGAATGGTTGGTGGATCGGAAGAGAATTCCGGCGGATTGGAG 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CACCTTCTCTCGTCTCGGAGAATGGTTGGTGGATCGGAAGAGAATTCCGGCGGATTGGAG 178 Query 172 GAAGAGGGTTGCTGTGATCAGAGTCAAAATCTTAAAAGAGTTCTCTTCTTTGCCTAAAGA 231 |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 179 GAAGAGGGTTGCTGCGATCAGAGTCAAAATCTTAAAAGAGTTTTCTTCTTTGCCTAAAGA 238 Query 232 GATCGATCCATTCTTTCAAACCCTAGATCCTGAAGTGATCGGTTACTTGGAGGTCAAAAA 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 239 GATCGATCCATTCTTTCAAACCCTAGATCCTGAAGTGATCGGTTACTTGGAGGTGAAAAA 298 Query 292 GGTGTATGAGATTCTCCTGAAGACAACTCCGGAAAGCCGCAACATCTTTGGTCGACTTTC 351 | | ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 299 GATATATGAGATTCTCCTGAAGACAACTCCGGAAAGCCGTAACATCTTTGGTCGGCTTTC 358 Query 352 GGGTGCTTCTGGTGTTTGGGAAGCAATTGTTCGTGCGTTTGAAAAAGATCACATTTATCT 411 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 359 GGGTGCTTCTGGAGTTTGGGAAGCTATTGTTCGTGCGTTTGAAAAAGATCACATTTATCT 418 Query 412 TGGGGAGGCAGCTCAGATAATAATTCAGAATGTTAATTACGAAATCCCTTATCTGAAAAA 471 |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct 419 TGGGGAGGCAGCTCAGATTATAATTCAGAATGTCAATTACGAAATCCCTTACCTGAAAAA 478 Query 472 GCAAGTGCAAAAGGTTCAGCAACAAATGACAGAACTTGATCGTAAAGAAGCTGATATCAA 531 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 479 GCAAGTGCAAAAGGTTCAGCAACAAATGGCCGAACTTGATCGTAAAGAAGCTGATATCAA 538 Query 532 AAGGAGCGTTGCACTCTCAGCAACAAAATACGAGGATGCTTGCCGAGAGCTTGGATTGCA 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 AAGGAGCGTTGCACTCTCAGCAACAAAATACGAGGATGCTTGCCGAGAGCTTGGATTGCA 598 Query 592 GGGAAACAATGTGAGGCGTGAGCTTTTGGAGACTGCGAGTTCGCTTCCTAGTACCTTTAG 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 GGGAAACAATGTGAGGCGTGAGCTTTTGGAGACTGCGAGTTCGCTTCCTAGTACCTTTAG 658 Query 652 CAAGATTCTGGAAGTTATCAACAGTGACTCAGTAACAGGGGCAATGGAGTACTACTCTGC 711 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 659 TAAGATTCTGGAAGTTATCAACAGTGACTCAGTAACAGGGGCTATGGAGTACTACTCCGC 718 Query 712 CTATGTTCAAGATGTTCATACTGAGAAAGATAAGCCTTTGAGGATTGTCTTACAAAACCT 771 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 719 CTATGTTAAAGATGTTCATACTGAGAAAGATAAGCCTTTGAGGATTGTTTTACAAAACTT 778 Query 772 GAAATACATTCGTGAAAACCCTCCATCATTAAGCGTTTTTGGGGACTCTGAAGGTCTCGA 831 |||| ||||||||||||||||||||||||||||||||| |||| |||||| | ||| || Sbjct 779 GAAAGGCATTCGTGAAAACCCTCCATCATTAAGCGTTTTGGGGGGCTCTGACGCTCTTGA 838 Query 832 TGCTGATAATATTCAGTCATCTGAGAATGCAAATGGTACAGATGCGGCTGCAGACAGCAT 891 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TGCTGATAATATTCAGTCATCTGAGAATGCAAATGGTACAGATGCGGCTGCAGACAGCAT 898 Query 892 TGATTGGGATATTACGGTTGAGACTCCTGAGATAGATTGGGATGTTAGTATGGTAGAAGA 951 |||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| Sbjct 899 TGATTGGGATATTACGCTTGATACTGCTGAGATAGATTGGGATGTTAGTATGGTAGAAGA 958 Query 952 AGTTGATAGTGGAAATGATCTAGGTTCATATGAAATTGTCAATGCCAGCGATATTCCTGA 1011 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 959 AGTTGATAGTGTAAATGATCTAGGTTCATATGAAATTGTCAATGCCAGTGATATTCCTGA 1018 Query 1012 GAATTCTCCATTTAAAGTGGAAGAAAGCCAAGGCCTTGAGGTTGATGTTTCTGAGATTTC 1071 || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 1019 GAGTTCACCATTTAAAGTGGAAGAAAGCCAAGGCCCTGAGGTTGATGTTTCTGAGATATC 1078 Query 1072 TTGGGATGTAAGTGTTGAAACACCTCAGGTAGAAGAAATAGGTGATTCAGCTTTGCTAGA 1131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 TTGGGATGTAAGTGTTGAAACACCTCAGGTAGAAGAAATAGGTGATTCAGCTTTGCTAGA 1138 Query 1132 ATCAAACCAGACACAGTTGACAGATTCTACAACTCAAGTCTTAGGGAGTGGAGGAGAGAG 1191 |||||| ||||||| |||| ||||||||||||| ||||||||||| |||||||||||||| Sbjct 1139 ATCAAATCAGACACCGTTGGCAGATTCTACAACCCAAGTCTTAGGAAGTGGAGGAGAGAG 1198 Query 1192 GAGCCAGCTGTTGGAGACAGAATATAGGAATAAGATCCTTGATGATTTGTATGAGGTCAA 1251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 GAGCCAGCTGTTGGAGACAGAATATAGGAATAAGATCCTTGATGATTTGTATGAGGTCAA 1258 Query 1252 GGCATTTTTGAACCAGCGTTTGATAGAACTGAGAAATGAAGATACGCTGTCCTTGCAACA 1311 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1259 GGCATTTTTAAACCAGCGTTTGATAGAACTGAGAAATGAAGATACTCTGTCCTTGCAACA 1318 Query 1312 CCACGTGCAAGCAGTCT-CCCCCATGGTTCTTCAGCAGTATTCTCCTGAAACCATAGAGC 1370 ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| Sbjct 1319 CCACGTGCAAGCAGT-TGCCCCCATGGTTCTTCAGCAGTATTCTCCCGAAACCATAGAGC 1377 Query 1371 CAATGGTGGTTGACATCTCCATGGCCATTTCATTGCTAACAAACAAGAAATCTCGGGATC 1430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 CAATGGTGGTTGACATCTCCATGGCCATTTCATTGCTAACAAACAAGAAATCTCGGGATC 1437 Query 1431 TGATCATGATCCTCAACTCCAAAAGATTCCTAGATAGGCTTGTTTCAGAGCTGGAGGAGA 1490 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1438 TGATCATGATTCTCAACTCCAAAAGATTTCTAGATAGGCTTGTTTCAGAGCTGGAGGAGA 1497 Query 1491 AGAAGCACCGTGAAGTGAAGTTAAGAGAGAGCTTGAAAGATGTGGGTAGAAGACGCATGG 1550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 AGAAGCACCGTGAAGTGAAGTTAAGAGAGAGCTTGAAAGATGTGGGTAGAAGACGCATGG 1557 Query 1551 AGCTGCAGAATTCACTTTCTGCTATATGGCCAAAACAGGAAGCTGCACTTTCGAAAACAA 1610 |||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| Sbjct 1558 AGCTGCAGAATTCACTCTCTTCTATATGGCCAAAACAGGAAGCTGCACTTTCGAAGACAA 1617 Query 1611 GAGAACTCAAGGAGCTATGTGAGACAAGTCTCTCTTCCATGTTTGATGGAAGACCTGTGA 1670 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1618 GAGAACTGAAGGAGCTATGTGAGACAAGTCTCTCTTCCATGTTTGATGGAAGACCTGTGA 1677 Query 1671 ATATAAGAGGAGAGATCAATACATTGTTGAACGCTGGGGTTTCTGCTTAGTTTGATCTTT 1730 |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 1678 ATATAAGAGGAGAGATCAATACATTGCTGAACGCAGGGGTTTCTGCTTAGTTTGATCTTT 1737 Query 1731 GGGATTTGCTAGAAAACTTAGTTTCAGTACACCAAGTGACCCT-GTTTCTTGCTTTAGGA 1789 |||||| |||||||||||||||||||| |||||||||||| || |||| || |||||||| Sbjct 1738 GGGATTGGCTAGAAAACTTAGTTTCAGAACACCAAGTGACTCTTGTTTATTACTTTAGGA 1797 Query 1790 TTTTGCCTTGTTTCAAACTCTT-TTGTATTT 1819 |||||||||||||||||||||| || ||||| Sbjct 1798 TTTTGCCTTGTTTCAAACTCTTCTT-TATTT 1827 > Ahg948648 jgi|Araly1|948648|scaffold_800535.1 Length=409 Score = 148 bits (80), Expect = 1e-34 Identities = 92/98 (94%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 126 TCGGAGAATGGTTGGTGGATCGGAAGAGAATTCCGGCGGATTGGAGGAAGAGGGTTGCTG 185 ||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 14 TCGAAGAATGGTTAGTGGATCGGAAGAGAATTCCGGCGGACTGGAGGAAGAGGGTGGCTG 73 Query 186 TGATCAGAGTCAAAATCTTAAAAGAGTTCTCTTCTTTG 223 ||||||||||||||||||||||||||||||| ||||| Sbjct 74 CGATCAGAGTCAAAATCTTAAAAGAGTTCTCTGCTTTG 111 > Ahg923925 jgi|Araly1|923925|scaffold_105206.1 Length=409 Score = 143 bits (77), Expect = 5e-33 Identities = 91/98 (93%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 126 TCGGAGAATGGTTGGTGGATCGGAAGAGAATTCCGGCGGATTGGAGGAAGAGGGTTGCTG 185 ||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||| Sbjct 14 TCGAAGAATGGTTAGTGGATCGGAAGAGAATTTCGGCGGACTGGAGGAAGAGGGTGGCTG 73 Query 186 TGATCAGAGTCAAAATCTTAAAAGAGTTCTCTTCTTTG 223 ||||||||||||||||||||||||||||||| ||||| Sbjct 74 CGATCAGAGTCAAAATCTTAAAAGAGTTCTCTGCTTTG 111 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68295809285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5