BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06839.3
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487498 jgi|Araly1|487498|fgenesh2_kg.6__632__AT5G06839.2 1851 0.0
> Ahg487498 jgi|Araly1|487498|fgenesh2_kg.6__632__AT5G06839.2
Length=1778
Score = 1851 bits (1002), Expect = 0.0
Identities = 1131/1188 (95%), Gaps = 29/1188 (2%)
Strand=Plus/Plus
Query 798 CAAGAAGGAAGGGAACCGCAAGGGTCTTGCCTCATCGGACCATGACATACCTAAATCGTC 857
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 617 CAATAAGGAAGGAAACCGCAAGGGTCTTGCCTCATCGGACCATGACATACCGAAATCGTC 676
Query 858 AGACCCTAAAACATTGAGAAGACTAGCACAAAACAGAGAAGCAGCAAGAAAAAGCAGATT 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 AGACCCTAAAACATTGAGAAGACTAGCACAAAACAGAGAAGCAGCAAGAAAAAGCAGATT 736
Query 918 ACGTAAAAAGGCTTATGTTCAGCAACTCGAGTCATGTAGGATCAAACTGACCCAACTAGA 977
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 737 ACGTAAAAAGGCTTATGTTCAGCAACTAGAGTCATGTAGGATCAAACTGACCCAACTAGA 796
Query 978 ACAAGAGATTCAACGGGCCAGATCCCAAGGCGTATTCTTTGGAGGGTCTCTTATAGGAGG 1037
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 797 ACAAGAGATTCAACGGGCCAGATCCCAAGGCGTATTCTTTGGAGGATCTCTTATAGGAGG 856
Query 1038 AGATCAACAGCAAGGTGGACTACCCATTGGCCCTGGCAACATCAGCT---CTGAAGCAGC 1094
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 857 AGATCAACAGCAAGGTGGACTACCCATTGGCCCTGGCAACATCAGCTCCGCAGAAGCAGC 916
Query 1095 GGTGTTCGATATGGAATATGCGAGGTGGCTGGAGGAGCAGCAGAGGCTATTAAACGAACT 1154
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 917 GGTGTTCGATATGGAATATGCGAGGTGGTTGGAGGAGCAGCAGAGGCTATTAAACGAACT 976
Query 1155 AAGGGTGGCAACACAAGAACACTTGTCCGAGAACGAGCTTAGGATGTTTGTGGACACATG 1214
||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct 977 AAGGGTGGCGACACAAGAGCACTTGGCCGAGAACGAGCTTAGGATGTTTGTGGACACTTG 1036
Query 1215 TTTAGCTCATTATGACCATTTGATTAACCTCAAGGCTATGGTCGCTAAGACCGATGTCTT 1274
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1037 TTTAGCTCATTATGACCATTTGATTAACCTCAAAGCCATGGTCGCTAAGACCGATGTCTT 1096
Query 1275 CCACCTCATTTCTGGAGCATGGAAAACTCCAGCTGAACGTTGCTTCTTGTGGATGGGTGG 1334
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1097 CCACCTTATTTCTGGAGCATGGAAAACTCCAGCCGAACGTTGCTTCTTGTGGATGGGTGG 1156
Query 1335 TTTCCGTCCATCGGAGATCATTAAGGTGATTGTGAACCAGATAGAACCATTGACGGAGCA 1394
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1157 TTTCCGTCCATCGGAGATCATTAAGGTGATTGTGAACCAGATAGAACCACTGACGGAGCA 1216
Query 1395 ACAGATAGTTGGGATATGTGGGCTGCAACAGTCCACACAAGAGGCCGAGGAGGCTCTCTC 1454
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1217 ACAAATAGTTGGGATATGTGGACTGCAACAGTCCACACAAGAGGCCGAGGAGGCTCTCTC 1276
Query 1455 GCAAGGCCTCGAGGCGTTGAATCAATCACTTTCCGATAGCATTGTCTCTGACTCCCTCCC 1514
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1277 GCAAGGCCTCGAGGCATTGAATCAATCACTTTCCGATAGCATTGTCTCTGACTCTCTCCC 1336
Query 1515 GCCTGCCTCCGCACCACTTCCTCCTCATCTATCCAATTTCATGTCACACATGTCCTTAGC 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 GCCTGCCTCCGCACCACTTCCTCCTCATCTATCCAATTTCATGTCACACATGTCCTTAGC 1396
Query 1575 TCTCAACAAGCTCTCTGCTCTCGAGGGCTTCGTTCTCCAGGCGGATAATTTGAGGCACCA 1634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 TCTCAACAAGCTCTCTGCTCTCGAGGGCTTCGTTCTCCAGGCGGATAATTTGAGGCACCA 1456
Query 1635 AACGATCCATAGGCTGAACCAATTGTTGACGACCCGTCAAGAAGCACGGTGTCTTCTAGC 1694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 AACGATCCATAGGCTGAACCAATTGTTGACGACCCGTCAAGAAGCACGGTGTCTTCTAGC 1516
Query 1695 CGTTGCGGAGTACTTCCACCGTCTTCAAGCTCTAAGTTCTCTCTGGCTAGCCCGTCCTCG 1754
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1517 CGTAGCGGAGTACTTCCACCGTCTTCAGGCTCTAAGTTCTCTCTGGCTAGCCCGTCCTCG 1576
Query 1755 GCAAGATGGATAATACTAAAACAACTGATGAAGGAAACCAAAAACAAAAACAAGAGAATA 1814
|||||| |||| |||||||||||||||||||| || | || |||||||
Sbjct 1577 GCAAGACGGATGATACTAAAACAACTGATGAA--AA-C-AA------------GAGAATA 1620
Query 1815 GGTTGATTAGTTAGCCGCCAGCTTGACCTCTTTATCATATATATCGTCTCTCTACTCAAA 1874
|||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 1621 GGTTGATTAGTTAGCC---AGCTTGACCTCTTTATCATATAT-T-GTCTCTCTACTCAAA 1675
Query 1875 TACAGTGCAATTAGGGAAAATTGTTTGGCTTCTTTTTGTTATATGATTCTTACTATTATG 1934
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1676 TACAGTGCAATTAGGGAAAATTGTTTGGCTTCTTTTTGTTATATGATTCTTACTAC-ATG 1734
Query 1935 TTTTTAATCAAGATGCAGATTATATATATAGACAAGTATTCCATACCT 1982
|||||||| ||||||| ||||||||| |||||||||| |||||||
Sbjct 1735 TTTTTAATTAAGATGCCGATTATATA----GACAAGTATTACATACCT 1778
Score = 830 bits (449), Expect = 0.0
Identities = 593/653 (91%), Gaps = 48/653 (7%)
Strand=Plus/Plus
Query 37 TTTGAACCCTCTCCACTTCAATATAACCGACCTCTCTTCTCTCT--TCTGaaaaaaaCAC 94
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1 TTTGAACCCTCTCCACTTCAATATAACCGACCTCTCTTCTCTCTAGTCTAAAAAAAACAC 60
Query 95 CAAAGGAGCTTTAAATGCTCCGTTACATAATCTCTATCTCTTTCCAAGAATATAGAGAAA 154
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAAGTAGCTTTAAATGCTCCGTTACATAATCTCTATCTCTTTCCAAGAATATAGAGAAA 120
Query 155 GGAAAATAATATACAAGAATTAAAAGAAGGTATATCATCATCTCTCTAGCTAGTGATCAA 214
| ||||||||||||||||||| ||||||| |||||| ||| ||||| |||||||||||
Sbjct 121 GAAAAATAATATACAAGAATT-AAAGAAGATATATC-TCA--TCTCT--CTAGTGATCAA 174
Query 215 AGCACCGTCATCATCATCATATATCATCAGCTTGCCTCAGAGGAGAAGAC-CAACATAAG 273
|||||||||||||||||||| || || | | | || || | ||||||||
Sbjct 175 AGCACCGTCATCATCATCAT-CAT-AT-A---T-CATC--------AG-CTTAACATAAG 218
Query 274 AGAGATCGAAGATCAAAATCTATCTCTCTTCATCATCTTCTGCTGTTACTATCA-T-A-T 330
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 219 AGAGATCGAAGATC-AAATCTATCTCTCTTCATCATCTTCTGCTGTTACTATCATTCACA 277
Query 331 CACACGCTCTCTCAAACATCAT-CC-TATAT--ATAGACTTCTCTtcatcatcatcaaat 386
|||||||||||||||||||||| || ||||| ||||||||||| | ||||||||||||
Sbjct 278 CACACGCTCTCTCAAACATCATCCCATATATAGATAGACTTCTC-T--TCATCATCAAAT 334
Query 387 gcaaggtcatcaccagaatcatcat---caacacttatcatcatcCTCCGCCACGTCTTC 443
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 335 GCAAGGTCATCACCAGAATCATCATCAACAACACTTATCATCATCCTCTGCCACGTCTTC 394
Query 444 CCATGGAAACTTCATGAACAAAGATGGGTATGATATTGGAGAGATAGACCCATCACTCTT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 CCATGGAAACTTCATGAACAAAGATGGGTATGATATTGGAGAGATAGACCCATCACTCTT 454
Query 504 CCTCTATCTTGATGGACAAGGACATCATGATCCTCCATCAACTGCTCCTTCTCCTTTAC- 562
||| ||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 455 CCTGTATCTTGATGGACAAGGACATCATGATCCTCCATCAACTGCTCCT-C-C-TTTACC 511
Query 563 --ATCATCATCACACAACTCAGAATTTGGCGATGAGACCTCCAACATCGACGCTCAACAT 620
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 512 TCATCATCATCACACAACTCAGAATTTGGCGATGAGACCTCCA---TCGACGCTCAACAT 568
Query 621 CTTTCCATCTCAGCCTATGCACATAGAGCCACCTCCTTCTTCTACACACAATA 673
||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 569 CTTCCCATCTCAGCCGATGCACATAGAGCCACCTCCTTCTTCTACACACAATA 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75380594855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5