BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06860.1
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487501 jgi|Araly1|487501|fgenesh2_kg.6__635__AT5G06860.1 1594 0.0
Ahg487502 jgi|Araly1|487502|fgenesh2_kg.6__636__AT5G06870.1 902 0.0
> Ahg487501 jgi|Araly1|487501|fgenesh2_kg.6__635__AT5G06860.1
Length=1149
Score = 1594 bits (863), Expect = 0.0
Identities = 1042/1128 (92%), Gaps = 13/1128 (1%)
Strand=Plus/Plus
Query 47 TCTCTTGTTCTTGTTCACATTCCTCACGACCTGTTTGTCTAAAGATCTCTGTAACCAAAA 106
||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 30 TCTCTTGTTCTTGTTCACATTCCTCACGATCTCTTTGTCTAAAGATCTTTGTAACCAAAA 89
Query 107 TGACAAAAACACCCTCCTCAAGATCAAGAAATCTCTAAACAACCCTTATCACCTCGCTTC 166
||||||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||
Sbjct 90 TGACAAAAACACCCTTCTAAAGATCAAGAAATCCCTAAACAACCCTTACCACCTGGCTTC 149
Query 167 ATGGGACCCTC-AAACCGACTGTTGCTCCTGGTACTGCCTTGAGTGCGGCGACGCCACCG 225
||| |||| | | |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 150 GTGGCACCC-CGAGACCGACTGTTGCTCATGGTACTGCCTCGAGTGCGGCGACGCCACCG 208
Query 226 TTAACCACCGTGTTACCGCCTTAACCATATTCTCCGGCCAGATCTCCGGTCAGATCCCGG 285
|||||||||| || |||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 209 TTAACCACCGCGTCACCGCCCTAACTATATTCTCCGGCCAGATCTCTGGTCAGATCCCTC 268
Query 286 CTGAAGTCGGTGACTTGCCGTATCTTGAGACCCTTGTCTTCCGCAAACTCTCTAACCTCA 345
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 269 CTGAAGTCGGTGACTTGCCGTATCTTGAAACCCTTGTCTTCCGCAAACTCTCTAACCTCA 328
Query 346 CCGGTAC-AATCCAACCCACCATCGCCAAACTCAAGAACCTCCGAA-T-GCTCAGGCTCA 402
||||| | |||||||||||||||||| |||||||||||||| | || | ||||||||||
Sbjct 329 CCGGT-CAAATCCAACCCACCATCGCTAAACTCAAGAACCT-C-AAGTACCTCAGGCTCA 385
Query 403 GCTGGACGAATCTGACAGGTCCAATTCCTGACTTTATAAGTCAGCTCAAGAATCTCGAGT 462
| ||||| |||||||| |||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 386 GTTGGACAAATCTGACGGGTCCAATTCCTGATTTTCTAAGCCAGCTCAAGAATCTCGAGT 445
Query 463 TCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATTCCAAGTTCTCTCTCTACGTTAC 522
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 446 TCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATACCAAGTTCACTCTCTACGTTAC 505
Query 523 CTAAAATCTTGGCTCTTGAACTTAGCAGGAACAAACTTACAGGTTCCATACCAGAGTCAT 582
|||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 506 CTAATATCCTGGCCCTTGAACTTAGCAGGAACAAACTTACAGGTTCAATACCAGAGTCAT 565
Query 583 TTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATCACATAACCAGCTCTCCGGTC 642
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 566 TTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATCACACAACCAGCTCTCCGGTC 625
Query 643 CAATACCCAAATCATTAGGCAACATCGACTTTAACCGGATCGATTTATCCCGCAACAAGC 702
| |||||||||||| |||||||| |||||||||||||||||||||| ||||| |||||||
Sbjct 626 CGATACCCAAATCACTAGGCAACCTCGACTTTAACCGGATCGATTTCTCCCGGAACAAGC 685
Query 703 TCCAAGGTGATGCTTCGATGTTGTTTGGTTCCAACAAAACAACCTGGTCTATTGACTTAT 762
|| |||||||||||||||||||||||||| |||||||||| || ||||| ||||| ||||
Sbjct 686 TCGAAGGTGATGCTTCGATGTTGTTTGGTGCCAACAAAACGACATGGTCCATTGATTTAT 745
Query 763 CAAGAAACATGTTCCAG-TTCGATATCTCAAAGGTTGATATCCCTAAAACACTTGGTATC 821
|||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||
Sbjct 746 CAAGAAACATGTTC-AGCTTCGATATCTCAAAGGTTGAGATCCCTAAGGCACTTGGTATC 804
Query 822 TTGGACTTGAACCACAATGGGATCACTGGGAATATTCCGGTGCAGTGGACTGAAGCTCCT 881
|||||||| ||||||||||||||||| |||||||| ||||| |||||||||||| |||||
Sbjct 805 TTGGACTTAAACCACAATGGGATCACAGGGAATATACCGGTTCAGTGGACTGAAACTCCT 864
Query 882 CTTCAGTTCTTCAATGTTAGCTACAACAAACTGTGTGGACACATCCCAACTGGAGGGAAA 941
||||| |||||||||||||||||||| ||| |||||||||| |||||||| |||||||||
Sbjct 865 CTTCAATTCTTCAATGTTAGCTACAATAAATTGTGTGGACATATCCCAACAGGAGGGAAA 924
Query 942 CTTCAGACATTTGATTCTTATTCCTATTTTCACAACAAGTGTTTGTGTGGTGCTCCTCTT 1001
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 925 CTTCAGACATTTGATTCTTATTCCTATTTCCATAACAAGTGTTTGTGTGGTGCTCCTCTT 984
Query 1002 GAAATTTGCAAGTAAACCAAGCTTATCTCTAGGATTACGAAAAAATATATTTGAGTCAAT 1061
||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 985 GAAATTTGCAAGTGAACCAAGCTTGTCTCTAGGATTTCGAAAAAATCTATTTGAGTCAAT 1044
Query 1062 AATATAGACAAATATGTAATGTTATTCGGATTGATTAATAAAACATGAACCAAACCTCTC 1121
| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 1045 A-TA--GACAAATATGTAATATTATTCGGATTGATTAATAAAACATGAACCAAAACTCGC 1101
Query 1122 ATTTGATGTATTCATAGCACATTTTCAAAATGTTTTATTTGATGGATT 1169
||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 1102 CTTTGATGAATTCATAGCACATTTTCAAAGTGTTTGATTTGATGGATT 1149
> Ahg487502 jgi|Araly1|487502|fgenesh2_kg.6__636__AT5G06870.1
Length=1062
Score = 902 bits (488), Expect = 0.0
Identities = 839/1004 (84%), Gaps = 42/1004 (4%)
Strand=Plus/Plus
Query 19 ACACCATGGATAAGACAGCGACATTGTGTCTCTTGTTCTTGTTCAC-AT--TCCTCACGA 75
|||| |||||||||||| |||| ||| ||||| |||||| ||| | |||||||||
Sbjct 5 ACACTATGGATAAGACAATGACA--CTGT-TCTTGCTCTTGTCCACTCTCCTCCTCACGA 61
Query 76 CCTGTTT-GTCTAAAGATCTCTGTAACCAAA-ATGACAAAAACACCCTCCTCAAGATCAA 133
| | ||| | |||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 62 CTTCTTTAG-CTAAAGATCTCTGTCA-CAAAGATGACAAAAACACCCTCCTCAAGATCAA 119
Query 134 GAAATCTCTAAACAACCCTTATCACCTCGCTTCATGGGACCCTCAAA-CCGACTGTTGCT 192
|||||| |||||||||||||| |||||||| ||||||||||| |||| ||||||||||||
Sbjct 120 GAAATCCCTAAACAACCCTTACCACCTCGCCTCATGGGACCC-CAAAACCGACTGTTGCT 178
Query 193 CCTGGTACTGCCTTGAGTGCGGCGACGCCACCGTTAACCACCGTGTTACCGCCTTAACCA 252
| |||||||| || |||||||||||||| ||||| |||||||| || || || ||| ||
Sbjct 179 CTTGGTACTGTCTCGAGTGCGGCGACGCTACCGTCAACCACCGCGTCACTTCCCTAATCA 238
Query 253 TATTCTCCGGCCAGATCTCCGGTCAGATCCCGGCTGAAGTCGGTGACTTGCCGTATCTTG 312
|| |||| ||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 239 TACAAGACGGCGAGATCTCCGGTCAGATCCCACCTGAAGTCGGTGACTTACCGTATCTT- 297
Query 313 AGA-CCCTTGTCTTCCGCAAACTCTCTAACCTCACCGGT-ACAATCCAACCCACCATCGC 370
| ||||| |||||||||||||| |||||||||| ||| ||| |||||||||| |||||
Sbjct 298 ACTTCCCTTATCTTCCGCAAACTCACTAACCTCACTGGTCACA-TCCAACCCACTATCGC 356
Query 371 CAAACTCAAGAACCTC-CGAATGCTCAGGCTCAGCTGGACGAATCTGACAGGTCCAATTC 429
||| |||||||| ||| | | ||||| || |||||||||||||| || ||||| |||
Sbjct 357 CAAGCTCAAGAATCTCACTTTT-CTCAGACTAAGCTGGACGAATCTCACCGGTCCGGTTC 415
Query 430 CTGACTTTATAAGTCAGCTCAAGAATCTCGAGTTC-TTAGAACTTTCCTTCAATGATCTC 488
|||| ||| | ||||||||||||||||| |||| | || || ||||||||||||||||||
Sbjct 416 CTGAGTTTCTGAGTCAGCTCAAGAATCTTGAGTACATT-GACCTTTCCTTCAATGATCTC 474
Query 489 TCTGGTTCCATTCCAAGTTCTCTCTCTACGTTACCTAAAATCTTGGCTCTTGAACTTAGC 548
| ||||||||| ||||||||||||||| | ||||||||| || | ||||||||||||
Sbjct 475 TATGGTTCCATACCAAGTTCTCTCTCTTCATTACCTAAACTCGAGTATCTTGAACTTAGT 534
Query 549 AGGAACAAACTTACAGGTTCC-ATACCAGAGTCATTTGGGTCGTTTCCAGGAACAGTCCC 607
|||||||| ||||||||| || |||||||||||||||||| ||||| |||||| ||||||
Sbjct 535 AGGAACAAGCTTACAGGT-CCGATACCAGAGTCATTTGGGACGTTTTCAGGAAAAGTCCC 593
Query 608 T-GACCTTCGCCTATCACATAACCAGCTCTCCGGTCCAATACCCAAATCATTAGGCAA-C 665
| | | || ||||||||| ||||||||||| ||| | ||||| |||||| ||||||| |
Sbjct 594 TAGTCTTTT-CCTATCACACAACCAGCTCTCTGGTACTATACCAAAATCACTAGGCAATC 652
Query 666 ATCGACTTTAACCGGATCGATTTATCCCGCAACAAGCTCCAAGGTGATGCTTCGATGTTG 725
||||||| |||| |||||||||||||| |||||||| ||||| ||||||||||| |||
Sbjct 653 C-CGACTTTTACCGCATCGATTTATCCCGAAACAAGCTTCAAGGCGATGCTTCGATCTTG 711
Query 726 TTTGGTTCCAACAAAACAACCTGG-TCTATTGACT-TATCAAGAAACATGTTCCAGTTCG 783
||||| | || ||||| || ||| || |||| | |||||||||||| |||||||||||
Sbjct 712 TTTGGAGCTAAAAAAACGACATGGATCG-TTGA-TATATCAAGAAACAAGTTCCAGTTCG 769
Query 784 ATATCTCAAAGGTTGATATCCCTAAAACACTTGGTATCTTGGACTTGAACCACAATGGGA 843
|| |||| |||||| | || |||| |||||| || ||||||| |||| ||||||| |
Sbjct 770 ATCTCTCCAAGGTTAAGCTCGCTAAGACACTTAATAACTTGGACATGAATCACAATGAAA 829
Query 844 TCACTGGGAATATTCCGG-TGCAGTGGA-CTGAAGCTCCTCTTCAGTT-CTTCAATGTTA 900
|||| ||||||||||||| || |||||| | ||||| | ||||||| || ||||||||
Sbjct 830 TCACAGGGAATATTCCGGCTG-AGTGGAGCA-AAGCTTATTTTCAGTTACT-CAATGTTA 886
Query 901 GCTACAACAAACTGTGTGGACACATCCC-AACTGGAGGGAA-ACTTCAGACATTTGATTC 958
|||| |||| | ||||||||| |||||| || |||| | | |||||| |||||||||
Sbjct 887 GCTATAACAGATTGTGTGGACGCATCCCCAAA-GGAGAGTTTA-TTCAGAGATTTGATTC 944
Query 959 TTATTCCTATTTTC-ACAACAAGTGTTTGTGTGGTGCTCCTCTT 1001
|||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 945 TTATTCCT-TTTTCCACAACAAGTGTTTGTGTGGTGCACCTCTT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43612617048
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5