BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06870.1
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487502 jgi|Araly1|487502|fgenesh2_kg.6__636__AT5G06870.1 1714 0.0
Ahg487501 jgi|Araly1|487501|fgenesh2_kg.6__635__AT5G06860.1 817 0.0
Ahg950055 jgi|Araly1|950055|scaffold_801942.1 416 2e-115
> Ahg487502 jgi|Araly1|487502|fgenesh2_kg.6__636__AT5G06870.1
Length=1062
Score = 1714 bits (928), Expect = 0.0
Identities = 1011/1052 (96%), Gaps = 2/1052 (0%)
Strand=Plus/Plus
Query 15 AAAAACACTATGGATAAGACAATGACACTGTTCTTGCTCTTGTCCACTCTCCTCCTCACG 74
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACACACTATGGATAAGACAATGACACTGTTCTTGCTCTTGTCCACTCTCCTCCTCACG 60
Query 75 ACTTCTTTAGCTAAAGATCTCTGTCATAAAGATGACAAAA-CTACCCTCCTCAAGATCAA 133
|||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 61 ACTTCTTTAGCTAAAGATCTCTGTCACAAAGATGACAAAAAC-ACCCTCCTCAAGATCAA 119
Query 134 GAAATCCCTAAACAACCCTTACCACCTCGCCTCATGGGATCCCAAAACCGACTGTTGCTC 193
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 GAAATCCCTAAACAACCCTTACCACCTCGCCTCATGGGACCCCAAAACCGACTGTTGCTC 179
Query 194 TTGGTACTGCCTCGAGTGCGGCGACGCTACTGTCAACCACCGTGTCACTTCCCTAATCAT 253
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 180 TTGGTACTGTCTCGAGTGCGGCGACGCTACCGTCAACCACCGCGTCACTTCCCTAATCAT 239
Query 254 ACAAGACGGCGAGATCTCCGGTCAGATCCCCCCTGAAGTCGGTGACTTACCGTATCTTAC 313
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 ACAAGACGGCGAGATCTCCGGTCAGATCCCACCTGAAGTCGGTGACTTACCGTATCTTAC 299
Query 314 ATCCCTTATCTTCCGCAAACTCACTAACCTCACTGGTCACATCCAACCCACTATCGCCAA 373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCCCTTATCTTCCGCAAACTCACTAACCTCACTGGTCACATCCAACCCACTATCGCCAA 359
Query 374 GCTCAAGAACCTCACTTTTCTCAGACTAAGCTGGACCAATCTCACCGGTCCGGTTCCTGA 433
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 GCTCAAGAATCTCACTTTTCTCAGACTAAGCTGGACGAATCTCACCGGTCCGGTTCCTGA 419
Query 434 GTTTCTGAGTCAGCTCAAGAATCTTGAGTACATTGACCTTTCCTTCAATGACCTCTCTGG 493
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 420 GTTTCTGAGTCAGCTCAAGAATCTTGAGTACATTGACCTTTCCTTCAATGATCTCTATGG 479
Query 494 TTCCATACCTAGTTCCCTCTCTTCATTACGTAAACTCGAGTATCTTGAACTTAGTAGGAA 553
||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 TTCCATACCAAGTTCTCTCTCTTCATTACCTAAACTCGAGTATCTTGAACTTAGTAGGAA 539
Query 554 CAAGCTTACAGGTCCGATACCAGAGTCATTTGGGACGTTTTCAGGAAAGGTCCCTAGTCT 613
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 CAAGCTTACAGGTCCGATACCAGAGTCATTTGGGACGTTTTCAGGAAAAGTCCCTAGTCT 599
Query 614 TTTCCTATCACACAACCAGCTCTCTGGTACTATACCAAAGTCACTAGGCAATCCCGACTT 673
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 TTTCCTATCACACAACCAGCTCTCTGGTACTATACCAAAATCACTAGGCAATCCCGACTT 659
Query 674 TTACCGCATCGATTTATCTCGGAACAAGCTTCAAGGCGATGCTTCAATCTTGTTTGGAGC 733
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TTACCGCATCGATTTATCCCGAAACAAGCTTCAAGGCGATGCTTCGATCTTGTTTGGAGC 719
Query 734 TaaaaaaaCAACATGGATCGTTGATATATCAAGAAACATGTTCCAGTTCGATCTCTCCAA 793
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 TAAAAAAACGACATGGATCGTTGATATATCAAGAAACAAGTTCCAGTTCGATCTCTCCAA 779
Query 794 GGTTAAGCTCGCTAAGACACTTAATAACTTGGACATGAATCACAATGGCATCACAGGGAG 853
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 780 GGTTAAGCTCGCTAAGACACTTAATAACTTGGACATGAATCACAATGAAATCACAGGGAA 839
Query 854 TATTCCGGCTGAGTGGAGCAAAGCTTATTTTCAGTTACTGAATGTTAGCTATAACAGACT 913
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 840 TATTCCGGCTGAGTGGAGCAAAGCTTATTTTCAGTTACTCAATGTTAGCTATAACAGATT 899
Query 914 GTGTGGACGCATCCCCAAAGGAGAGTATATTCAAAGATTTGATTCTTATTCCTTTTTCCA 973
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 900 GTGTGGACGCATCCCCAAAGGAGAGTTTATTCAGAGATTTGATTCTTATTCCTTTTTCCA 959
Query 974 CAACAAGTGTTTATGTGGTGCACCTCTTCCTAGTTGCAAGTGAAGATTCCAGCAAAACCA 1033
|||||||||||| ||||||||||||||||| ||||| |||||||||||| ||| || |||
Sbjct 960 CAACAAGTGTTTGTGTGGTGCACCTCTTCCCAGTTGTAAGTGAAGATTCAAGCGAAGCCA 1019
Query 1034 AGCATTATCTCTGATATACCAAATAATTAATC 1065
||| |||||||| || ||||||||||| ||||
Sbjct 1020 AGCTTTATCTCTAATGTACCAAATAATCAATC 1051
> Ahg487501 jgi|Araly1|487501|fgenesh2_kg.6__635__AT5G06860.1
Length=1149
Score = 817 bits (442), Expect = 0.0
Identities = 816/992 (82%), Gaps = 43/992 (4%)
Strand=Plus/Plus
Query 46 TCTTGCTCTTGTCCACTCTCCTCCTCACGACT-TCTTTAG-CTAAAGATCTCTGTCA-TA 102
||||| |||||| ||| | ||||||||| | ||||| | |||||||||| ||| | |
Sbjct 32 TCTTGTTCTTGTTCAC-AT--TCCTCACGA-TCTCTTT-GTCTAAAGATCTTTGTAACCA 86
Query 103 AAGATGAC-AAAACTACCCTCCTCAAGATCAAGAAATCCCTAAACAACCCTTACCACCTC 161
|| ||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 87 AA-ATGACAAAAAC-ACCCTTCTAAAGATCAAGAAATCCCTAAACAACCCTTACCACCTG 144
Query 162 GCCTCATGGGATCCCAAAACCGACTGTTGCTCTTGGTACTGCCTCGAGTGCGGCGACGCT 221
|| || ||| | ||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 145 GCTTCGTGGCACCCCGAGACCGACTGTTGCTCATGGTACTGCCTCGAGTGCGGCGACGCC 204
Query 222 ACTGTCAACCACCGTGTCACTTCCCTAA-TCATACAAGACGGCGAGATCTCCGGTCAGAT 280
|| || |||||||| ||||| |||||| | ||| |||| ||||||| ||||||||
Sbjct 205 ACCGTTAACCACCGCGTCACCGCCCTAACT-ATATTCTCCGGCCAGATCTCTGGTCAGAT 263
Query 281 CCCCCCTGAAGTCGGTGACTTACCGTATCTT-ACATCCCTTATCTTCCGCAAACTCACTA 339
||| ||||||||||||||||| ||||||||| | | ||||| |||||||||||||| |||
Sbjct 264 CCCTCCTGAAGTCGGTGACTTGCCGTATCTTGAAA-CCCTTGTCTTCCGCAAACTCTCTA 322
Query 340 ACCTCACTGGTCACATCCAACCCACTATCGCCAAGCTCAAGAACCTCACTTTTCTCAGAC 399
||||||| ||||| ||||||||||| ||||| || ||||||||||||| | ||||| |
Sbjct 323 ACCTCACCGGTCAAATCCAACCCACCATCGCTAAACTCAAGAACCTCAAGTACCTCAGGC 382
Query 400 TAAGCTGGACCAATCTCACCGGTCCGGTTCCTGAGTTTCTGAGTCAGCTCAAGAATCTTG 459
| || ||||| ||||| || ||||| ||||||| ||||| || |||||||||||||| |
Sbjct 383 TCAGTTGGACAAATCTGACGGGTCCAATTCCTGATTTTCTAAGCCAGCTCAAGAATCTCG 442
Query 460 AGTACATT-GACCTTTCCTTCAATGACCTCTCTGGTTCCATACCTAGTTCCCTCTCTTCA 518
||| | || || |||||||||||||| ||||||||||||||||| ||||| |||||| |
Sbjct 443 AGTTC-TTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATACCAAGTTCACTCTCTACG 501
Query 519 TTACGTAA-ACTCGAGTATCTTGAACTTAGTAGGAACAAGCTTACAGGTCCGATACCAGA 577
|||| ||| | || | ||||||||||| |||||||| ||||||||| | ||||||||
Sbjct 502 TTACCTAATA-TCCTGGCCCTTGAACTTAGCAGGAACAAACTTACAGGTTCAATACCAGA 560
Query 578 GTCATTTGGGACGTTTTCAGGAA-AGGTCCCTAGTCTTTT-CCTATCACACAACCAGCTC 635
|||||||||| ||||| |||||| || ||||| | | || |||||||||||||||||||
Sbjct 561 GTCATTTGGGTCGTTTCCAGGAACAG-TCCCT-GACCTTCGCCTATCACACAACCAGCTC 618
Query 636 TCTGGTACTATACC-AAAGTCACTAGGCAATCC-CGACTTTTACCGCATCGATTTATCTC 693
|| ||| | ||||| ||| ||||||||||| || ||||||| |||| |||||||| || |
Sbjct 619 TCCGGTCCGATACCCAAA-TCACTAGGCAA-CCTCGACTTTAACCGGATCGATTTCTCCC 676
Query 694 GGAACAAGCTTC-AAGGCGATGCTTCAATCTTGTTTGGAGCTaaaaaaaCAACATGGATC 752
|||||||||| | |||| |||||||| || |||||||| || || ||||| |||||| ||
Sbjct 677 GGAACAAGCT-CGAAGGTGATGCTTCGATGTTGTTTGGTGCCAACAAAACGACATGG-TC 734
Query 753 G-TTGATATATCAAGAAACATGTTCCAG-TTCGATCTCTCCAAGGTTAAGCTCGCTAAGA 810
||||| ||||||||||||||||| || |||||| |||| |||||| || || |||||
Sbjct 735 CATTGATTTATCAAGAAACATGTTC-AGCTTCGATATCTCAAAGGTTGAGATCCCTAAGG 793
Query 811 CACTTAATAACTTGGACATGAATCACAATGGCATCACAGGGAGTATTCCGGCTGAGTGGA 870
||||| || ||||||| | || |||||||| |||||||||| ||| |||| | ||||||
Sbjct 794 CACTTGGTATCTTGGACTTAAACCACAATGGGATCACAGGGAATATACCGGTTCAGTGGA 853
Query 871 --GCAAAGCTTATTTTCAGTTACTG-AATGTTAGCTATAACAGACTGTGTGGACGCATCC 927
| ||| || | |||| || || ||||||||||| || | | ||||||||| ||||
Sbjct 854 CTG-AAA-CTCCTCTTCAATT-CTTCAATGTTAGCTACAATAAATTGTGTGGACATATCC 910
Query 928 CCAA-AGGAGAGTATA-TTCAAAGATTTGATTCTTATTCCTTTTTCCACAACAAGTGTTT 985
| || ||||| | | | |||| | ||||||||||||||||| |||||| |||||||||||
Sbjct 911 C-AACAGGAGGGAA-ACTTCAGACATTTGATTCTTATTCCTATTTCCATAACAAGTGTTT 968
Query 986 ATGTGGTGCACCTCTTCCTAGTTGCAAGTGAA 1017
|||||||| |||||| | |||||||||||
Sbjct 969 GTGTGGTGCTCCTCTTGAAATTTGCAAGTGAA 1000
> Ahg950055 jgi|Araly1|950055|scaffold_801942.1
Length=622
Score = 416 bits (225), Expect = 2e-115
Identities = 243/252 (96%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 167 ATGGGATCCCAAAACCGACTGTTGCTCTTGGTACTGCCTCGAGTGCGGCGACGCTACTGT 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 371 ATGGGATCCCAAAACCGACTGTTGCTCTTGGTACTGCCTCGAGTGCGGCGACGCTACCGT 430
Query 227 CAACCACCGTGTCACTTCCCTAATCATACAAGACGGCGAGATCTCCGGTCAGATCCCCCC 286
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 431 CAACCACCGCGTCACTTCCCTAATCATACAAGACGGCGAGATCTCCGTTCAGATCCCAGC 490
Query 287 TGAAGTCGGTGACTTACCGTATCTTACATCCCTTATCTTCCGCAAACTCACTAACCTCAC 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TGAAGTCGGTGACTTACCGTATCTTACATCCCTTATCTTCCGCAAACTCACTAACCTCAC 550
Query 347 TGGTCACATCCAACCCACTATCGCCAAGCTCAAGAACCTCACTTTTCTCAGACTAAGCTG 406
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 551 TGGTCAGATCCAACCCACTATTGCCAAGCTCAAGAATCTCACTTTTCTCAGACTAAGCTG 610
Query 407 GACCAATCTCAC 418
||| ||||||||
Sbjct 611 GACGAATCTCAC 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43498248297
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5