BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G06890.1

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487504 jgi|Araly1|487504|fgenesh2_kg.6__638__AT5G06890.1          261    1e-69
  Ahg940134 jgi|Araly1|940134|scaffold_600678.1                        171    2e-42
  Ahg313937 jgi|Araly1|313937|fgenesh1_pm.C_scaffold_1002717           122    6e-28


> Ahg487504 jgi|Araly1|487504|fgenesh2_kg.6__638__AT5G06890.1
Length=198

 Score =  261 bits (141),  Expect = 1e-69
 Identities = 180/199 (90%), Gaps = 2/199 (1%)
 Strand=Plus/Plus

Query  4    GTTTCTGTTCC-AGACGTCAATGATGGGCAAGTCATTGAGATCACAGTGCAGTCCTTATC  62
            |||||| |||| || | | ||||||| ||||||||||||||||||||||||||| || ||
Sbjct  1    GTTTCTATTCCAAG-CTTGAATGATGAGCAAGTCATTGAGATCACAGTGCAGTCGTTGTC  59

Query  63   CGAAAACGTGGCAAGTTTGAAAGAGAAAGTAGCAAACAAACTGAAGTTAAGGGGAAAAGC  122
            ||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||
Sbjct  60   CGAAAACGTGGCAAGTTTGAAGGAGAAAGTGGCAAACAAACTCAAGTTCAGTGGAAAAGC  119

Query  123  CGGGATTTTAAAGGACGATGACAAGTCACTTGCACATTACAATGTTCGAGCAGGTGACAT  182
            |||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |||| 
Sbjct  120  CGGGCTTTTAAAGGACGACGACAAGTCACTTGCACATTACAATGTTCGAACAGGAGACAC  179

Query  183  CCTAACACTGTCTTGGTAA  201
            |||||||||||||| ||||
Sbjct  180  CCTAACACTGTCTTTGTAA  198


> Ahg940134 jgi|Araly1|940134|scaffold_600678.1
Length=203

 Score =  171 bits (92),  Expect = 2e-42
 Identities = 162/193 (84%), Gaps = 16/193 (8%)
 Strand=Plus/Plus

Query  5    TTTCTGTTCCAGACGTCAATGATGGGCAAGTCATTGAGATCACAGTGCAGTCCTTATCCG  64
            ||||||||||| || | |||||||||||||||||||||||||||||||||         |
Sbjct  1    TTTCTGTTCCAAACTTGAATGATGGGCAAGTCATTGAGATCACAGTGCAG---------G  51

Query  65   AAAACGTGGCA-AGTTTGAAAGAGAAAGTAGCAAACAAACTGAAGTTAAGGGGAAAAGCC  123
            ||  ||||||| | |||||| |||||| |||||| |||| || ||||||| |||||||||
Sbjct  52   AA--CGTGGCAGA-TTTGAAGGAGAAAATAGCAACCAAAATGGAGTTAAGTGGAAAAGCC  108

Query  124  GGGATTTTAAAGGACGATGACAAGTCACTTGCACATTACAATGTTCGAGCAGGTGACATC  183
            ||| ||||||| ||| |  |||||||||||||||||||||||||| ||||||| ||||||
Sbjct  109  GGGGTTTTAAAAGAC-A--ACAAGTCACTTGCACATTACAATGTTGGAGCAGGAGACATC  165

Query  184  CTAACACTGTCTT  196
             ||||||| ||||
Sbjct  166  ATAACACTTTCTT  178


> Ahg313937 jgi|Araly1|313937|fgenesh1_pm.C_scaffold_1002717
Length=2337

 Score =  122 bits (66),  Expect = 6e-28
 Identities = 84/93 (90%), Gaps = 0/93 (0%)
 Strand=Plus/Plus

Query  3     GGTTTCTGTTCCAGACGTCAATGATGGGCAAGTCATTGAGATCACAGTGCAGTCCTTATC  62
             ||||||| | ||| ||||  |||||||||||||||||||||||||||||||||| |||||
Sbjct  2097  GGTTTCTATGCCAAACGTGGATGATGGGCAAGTCATTGAGATCACAGTGCAGTCATTATC  2156

Query  63    CGAAAACGTGGCAAGTTTGAAAGAGAAAGTAGC  95
             ||||||||||| ||||||||| |||||| ||||
Sbjct  2157  CGAAAACGTGGGAAGTTTGAAGGAGAAAATAGC  2189



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6797510458


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5