BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06900.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892616 jgi|Araly1|892616|Al_scaffold_0006_612 2292 0.0
> Ahg892616 jgi|Araly1|892616|Al_scaffold_0006_612
Length=1527
Score = 2292 bits (1241), Expect = 0.0
Identities = 1433/1527 (94%), Gaps = 8/1527 (1%)
Strand=Plus/Plus
Query 1 ATGGTGGATTTACAATACTTCTCCGTAATCA-TCCTTGTATGTCTTGGAATCACAGTCTT 59
||||||||| |||||||||||| | |||||| ||||| |||| |||||||||||||||||
Sbjct 1 ATGGTGGATATACAATACTTCTTCATAATCATTCCTT-TATGCCTTGGAATCACAGTCTT 59
Query 60 GATCCAAGCTATTACTAACAGATTACGTGACAGACTTCCACTCCCACCAAGCCCAACAGC 119
||||||||| ||||||||||||||||| ||| ||| || ||||||||||||||||||||
Sbjct 60 GATCCAAGCCATTACTAACAGATTACGCAACAAACTACCGCTCCCACCAAGCCCAACAGC 119
Query 120 TTTACCGATCATCGGTCACATTCACCTCCTTGGTCCCATAGCTCACCAAGCACTTCACAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTACCGATCATCGGTCACATTCACCTCCTTGGTCCCATAGCTCACCAAGCACTTCACAA 179
Query 180 GCTCTCAATCCGCTACGGACCTTTGATGTATCTCTTCATTGGCTCTATTCCTAATCTTAT 239
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 180 ACTCTCAATCCGCTACGGACCCTTGATGTATCTCTTCATTGGCTCCATTCCTAATCTTAT 239
Query 240 TGTCTCATCAGCCGAGATGGCGAATGAGATTCTCAAATCCAATGAACTCAACTTCCTGAA 299
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 TGTCTCATCGGCCGAGATGGCGAATGAGATTCTCAAATCCAATGAGCTCAACTTCCTGAA 299
Query 300 CCGTCCCACAATGCAAAACGTTGACTACCTTACTTATGGCTCAGCCGATTTTTTCTCAGC 359
||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 300 CCGTCCCACGATGCAAAACGTTGACTACCTTACTTATGGCTCTGCGGATTTCTTCTCAGC 359
Query 360 GCCTTACGGGCTTCACTGGAAGTTCATGAAGAGAATTTGTATGGTGGAGCTCTTCAGCAG 419
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 GCCTTACGGGCTTCGCTGGAAGTTCATGAAGAGAATTTGTATGGTGGAGCTCTTTAGCAG 419
Query 420 CAGAGCTTTAGATAGCTTTGTTTCCGTAAGAAGCGAGGAGTTAAAGAAGCTTCTAATACG 479
|||||||||||| || |||||||| || |||||||||||||||| ||||||||| |||||
Sbjct 420 CAGAGCTTTAGAAAGATTTGTTTCAGTGAGAAGCGAGGAGTTAAGGAAGCTTCTGATACG 479
Query 480 AGTTCTGAAGAAAGCAGAAGCAGAAGAGAGTGTTAATCTTGGTGAACAGCTAAAGGAATT 539
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 CGTTTTGAAGAAAGCAGAAGCAGAAGAGAGTGTTAATCTCGGTGAACAGCTAAAGGAATT 539
Query 540 GACAAGCAACATCATAACGAGAATGATGTTCAG-GAAAATGCAATCGGATAGTGACGGTG 598
||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 540 GACAAGCAACATCATAACGAGAATGATGTTCAGAGAAA-TGCAATCGGATAGTGAAGGTG 598
Query 599 GCGA-AAAATCAGAGGAGGTTATCAAAATGGTGGTGGAGTTAAATGAACTAGCCGGATTT 657
|| |||| ||||||| ||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 599 ACGGCAAAA-CAGAGGAAGTTATCAAAATGGTGGTGGAGTTGAATGAATTAGCCGGGTTT 657
Query 658 TTCAACGTTTCTGAAACGTTTTGGTTCTTGAA-AAGGCTTGACTTGCAAGGACTGAAGAA 716
||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 658 TTCAACGTTTCTGAAACGTTTTGGTTCTT-AAGAAGGCTTGACTTGCAAGGACTCAAGAA 716
Query 717 AAGGCTCAAGAATGCTCGAGACAAATATGATGTGATCATAGAAAGAATAATGGAAGAGCA 776
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 717 GAGGCTCAAGAATGTTCGAGACAAATATGATGTGATCATAGAAAGAATAATGAAAGAGCA 776
Query 777 TGAGTCTAGTAAGAAGAATGCTACAGGAGAAAGAAACATGCTAGACGTTTTGCTCGACAT 836
||||||||| || |||| | |||||||| ||| |||||||||||| ||||||| |||||
Sbjct 777 TGAGTCTAGGAATAAGAGGGATACAGGAGCAAGGAACATGCTAGACATTTTGCTTGACAT 836
Query 837 ATATGAAGACAAAAACGCAGAGATGAAGCTGACAAGAGAAAACATTAAGGCCTTCATCAT 896
|||||||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 837 ATATGAAGACAAAAACGCTGAGGTGAAGCTGACTAGAGAAAACATCAAGGCCTTCATCAT 896
Query 897 GAATATTTATGGGGGTGGAACAGATACATCTGCCATAACAGTAGAATGGGCACTAGCAGA 956
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 897 GAATATTTATGGGGGTGGAACAGATACATCTGCCATAACAGTAGAATGGGCTCTAGCGGA 956
Query 957 GCTGATAAACCATCCAGAGATCATGAAGAAAGCACAACAAGAGATAGAGCAAGTGGTGGG 1016
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 GCTGATAAACCATCCAGAGATCATGAAGAAAGCGCAACAAGAGATAGAGCAAGTGGTGGG 1016
Query 1017 AAACAAGAGAGTAGTTGAAGAATCGGATTTGTGTAATCTTAGTTACACCCAAGCAGTGGT 1076
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1017 AAACAAGAGAGTAGTTGAAGAATCAGATTTGTGTAATCTTAGTTACATCCAAGCAGTGGT 1076
Query 1077 GAAGGAGACAATGAGGTTACACCCTGGAGGACCAATATTCGTGAGAGAATCTGATGAAGA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1077 GAAGGAGACAATGAGGTTACACCCTGGAGGACCAATATTCGTGAGAGAATCGGATGAAGA 1136
Query 1137 ATGCGCGGTGGCTGGATTCAGAATCCCGGCTAAAACAAGAGTGATAGTTAACGTGTGGGC 1196
|||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1137 ATGCGCAGTGGCTGGATTTAGAATTCCGGCTAAAACAAGAGTGATAGTGAACGTTTGGGG 1196
Query 1197 GATTGGGAGAGACTCAAATCAATGGGAAGATCCATTGGAGTTTAGGCCTGAGAGATTTGA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GATTGGGAGAGACTCAAATCAATGGGAAGATCCATTGGAGTTTAGGCCTGAGAGATTTGA 1256
Query 1257 AGGGAGTGAATGGAAGGTCATGAGTGAGAAGATGATGTCTTTTGGAGCTGGGAGAAGAAG 1316
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1257 AGGGATTGAATGGAAGGTCATGAGTGAAAAGATGATGTCTTTTGGAGCTGGGAGAAGAAG 1316
Query 1317 TTGTCCTGGAGAGAAAATGGTGTTTAGATTCGTTCCAATAATTTTAGCTGCAATAATACA 1376
|||||| |||||||||||||||||||||||||||||| | || ||||||| ||||| ||
Sbjct 1317 TTGTCCAGGAGAGAAAATGGTGTTTAGATTCGTTCCAGTCGTTGTAGCTGCGATAATTCA 1376
Query 1377 GTGTTTTGAGCTGAAAGTGAAGGGAAGTGTGGATATGGATGAAGGGACTGGATCATCTTT 1436
|||||||||||||||||| || |||||||| || ||| |||||||||||||||||||| |
Sbjct 1377 GTGTTTTGAGCTGAAAGTAAAAGGAAGTGTAGAGATGAATGAAGGGACTGGATCATCTCT 1436
Query 1437 GCCTAGAGCTACACCTTTAGTGTGTGTTCCTGTTGCTAAAGAGGCTACACAATCATTTTC 1496
||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1437 GCCTAGAGCCACACCTTTGGTGTGTGTTCCTGTTGCTAAAGAAGCTATACAATCATTTTC 1496
Query 1497 TCTACTAGAACCAAATGTCAACTTCTA 1523
||||||||||||||| |||||||||||
Sbjct 1497 TCTACTAGAACCAAAGGTCAACTTCTA 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5