BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06900.1 Length=1524 Score E Sequences producing significant alignments: (Bits) Value Ahg892616 jgi|Araly1|892616|Al_scaffold_0006_612 2292 0.0 > Ahg892616 jgi|Araly1|892616|Al_scaffold_0006_612 Length=1527 Score = 2292 bits (1241), Expect = 0.0 Identities = 1433/1527 (94%), Gaps = 8/1527 (1%) Strand=Plus/Plus Query 1 ATGGTGGATTTACAATACTTCTCCGTAATCA-TCCTTGTATGTCTTGGAATCACAGTCTT 59 ||||||||| |||||||||||| | |||||| ||||| |||| ||||||||||||||||| Sbjct 1 ATGGTGGATATACAATACTTCTTCATAATCATTCCTT-TATGCCTTGGAATCACAGTCTT 59 Query 60 GATCCAAGCTATTACTAACAGATTACGTGACAGACTTCCACTCCCACCAAGCCCAACAGC 119 ||||||||| ||||||||||||||||| ||| ||| || |||||||||||||||||||| Sbjct 60 GATCCAAGCCATTACTAACAGATTACGCAACAAACTACCGCTCCCACCAAGCCCAACAGC 119 Query 120 TTTACCGATCATCGGTCACATTCACCTCCTTGGTCCCATAGCTCACCAAGCACTTCACAA 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TTTACCGATCATCGGTCACATTCACCTCCTTGGTCCCATAGCTCACCAAGCACTTCACAA 179 Query 180 GCTCTCAATCCGCTACGGACCTTTGATGTATCTCTTCATTGGCTCTATTCCTAATCTTAT 239 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 180 ACTCTCAATCCGCTACGGACCCTTGATGTATCTCTTCATTGGCTCCATTCCTAATCTTAT 239 Query 240 TGTCTCATCAGCCGAGATGGCGAATGAGATTCTCAAATCCAATGAACTCAACTTCCTGAA 299 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 240 TGTCTCATCGGCCGAGATGGCGAATGAGATTCTCAAATCCAATGAGCTCAACTTCCTGAA 299 Query 300 CCGTCCCACAATGCAAAACGTTGACTACCTTACTTATGGCTCAGCCGATTTTTTCTCAGC 359 ||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 300 CCGTCCCACGATGCAAAACGTTGACTACCTTACTTATGGCTCTGCGGATTTCTTCTCAGC 359 Query 360 GCCTTACGGGCTTCACTGGAAGTTCATGAAGAGAATTTGTATGGTGGAGCTCTTCAGCAG 419 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 360 GCCTTACGGGCTTCGCTGGAAGTTCATGAAGAGAATTTGTATGGTGGAGCTCTTTAGCAG 419 Query 420 CAGAGCTTTAGATAGCTTTGTTTCCGTAAGAAGCGAGGAGTTAAAGAAGCTTCTAATACG 479 |||||||||||| || |||||||| || |||||||||||||||| ||||||||| ||||| Sbjct 420 CAGAGCTTTAGAAAGATTTGTTTCAGTGAGAAGCGAGGAGTTAAGGAAGCTTCTGATACG 479 Query 480 AGTTCTGAAGAAAGCAGAAGCAGAAGAGAGTGTTAATCTTGGTGAACAGCTAAAGGAATT 539 ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 480 CGTTTTGAAGAAAGCAGAAGCAGAAGAGAGTGTTAATCTCGGTGAACAGCTAAAGGAATT 539 Query 540 GACAAGCAACATCATAACGAGAATGATGTTCAG-GAAAATGCAATCGGATAGTGACGGTG 598 ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| Sbjct 540 GACAAGCAACATCATAACGAGAATGATGTTCAGAGAAA-TGCAATCGGATAGTGAAGGTG 598 Query 599 GCGA-AAAATCAGAGGAGGTTATCAAAATGGTGGTGGAGTTAAATGAACTAGCCGGATTT 657 || |||| ||||||| ||||||||||||||||||||||| |||||| ||||||| ||| Sbjct 599 ACGGCAAAA-CAGAGGAAGTTATCAAAATGGTGGTGGAGTTGAATGAATTAGCCGGGTTT 657 Query 658 TTCAACGTTTCTGAAACGTTTTGGTTCTTGAA-AAGGCTTGACTTGCAAGGACTGAAGAA 716 ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| Sbjct 658 TTCAACGTTTCTGAAACGTTTTGGTTCTT-AAGAAGGCTTGACTTGCAAGGACTCAAGAA 716 Query 717 AAGGCTCAAGAATGCTCGAGACAAATATGATGTGATCATAGAAAGAATAATGGAAGAGCA 776 ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 717 GAGGCTCAAGAATGTTCGAGACAAATATGATGTGATCATAGAAAGAATAATGAAAGAGCA 776 Query 777 TGAGTCTAGTAAGAAGAATGCTACAGGAGAAAGAAACATGCTAGACGTTTTGCTCGACAT 836 ||||||||| || |||| | |||||||| ||| |||||||||||| ||||||| ||||| Sbjct 777 TGAGTCTAGGAATAAGAGGGATACAGGAGCAAGGAACATGCTAGACATTTTGCTTGACAT 836 Query 837 ATATGAAGACAAAAACGCAGAGATGAAGCTGACAAGAGAAAACATTAAGGCCTTCATCAT 896 |||||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| Sbjct 837 ATATGAAGACAAAAACGCTGAGGTGAAGCTGACTAGAGAAAACATCAAGGCCTTCATCAT 896 Query 897 GAATATTTATGGGGGTGGAACAGATACATCTGCCATAACAGTAGAATGGGCACTAGCAGA 956 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 897 GAATATTTATGGGGGTGGAACAGATACATCTGCCATAACAGTAGAATGGGCTCTAGCGGA 956 Query 957 GCTGATAAACCATCCAGAGATCATGAAGAAAGCACAACAAGAGATAGAGCAAGTGGTGGG 1016 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 957 GCTGATAAACCATCCAGAGATCATGAAGAAAGCGCAACAAGAGATAGAGCAAGTGGTGGG 1016 Query 1017 AAACAAGAGAGTAGTTGAAGAATCGGATTTGTGTAATCTTAGTTACACCCAAGCAGTGGT 1076 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 1017 AAACAAGAGAGTAGTTGAAGAATCAGATTTGTGTAATCTTAGTTACATCCAAGCAGTGGT 1076 Query 1077 GAAGGAGACAATGAGGTTACACCCTGGAGGACCAATATTCGTGAGAGAATCTGATGAAGA 1136 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1077 GAAGGAGACAATGAGGTTACACCCTGGAGGACCAATATTCGTGAGAGAATCGGATGAAGA 1136 Query 1137 ATGCGCGGTGGCTGGATTCAGAATCCCGGCTAAAACAAGAGTGATAGTTAACGTGTGGGC 1196 |||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |||| Sbjct 1137 ATGCGCAGTGGCTGGATTTAGAATTCCGGCTAAAACAAGAGTGATAGTGAACGTTTGGGG 1196 Query 1197 GATTGGGAGAGACTCAAATCAATGGGAAGATCCATTGGAGTTTAGGCCTGAGAGATTTGA 1256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 GATTGGGAGAGACTCAAATCAATGGGAAGATCCATTGGAGTTTAGGCCTGAGAGATTTGA 1256 Query 1257 AGGGAGTGAATGGAAGGTCATGAGTGAGAAGATGATGTCTTTTGGAGCTGGGAGAAGAAG 1316 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1257 AGGGATTGAATGGAAGGTCATGAGTGAAAAGATGATGTCTTTTGGAGCTGGGAGAAGAAG 1316 Query 1317 TTGTCCTGGAGAGAAAATGGTGTTTAGATTCGTTCCAATAATTTTAGCTGCAATAATACA 1376 |||||| |||||||||||||||||||||||||||||| | || ||||||| ||||| || Sbjct 1317 TTGTCCAGGAGAGAAAATGGTGTTTAGATTCGTTCCAGTCGTTGTAGCTGCGATAATTCA 1376 Query 1377 GTGTTTTGAGCTGAAAGTGAAGGGAAGTGTGGATATGGATGAAGGGACTGGATCATCTTT 1436 |||||||||||||||||| || |||||||| || ||| |||||||||||||||||||| | Sbjct 1377 GTGTTTTGAGCTGAAAGTAAAAGGAAGTGTAGAGATGAATGAAGGGACTGGATCATCTCT 1436 Query 1437 GCCTAGAGCTACACCTTTAGTGTGTGTTCCTGTTGCTAAAGAGGCTACACAATCATTTTC 1496 ||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||| Sbjct 1437 GCCTAGAGCCACACCTTTGGTGTGTGTTCCTGTTGCTAAAGAAGCTATACAATCATTTTC 1496 Query 1497 TCTACTAGAACCAAATGTCAACTTCTA 1523 ||||||||||||||| ||||||||||| Sbjct 1497 TCTACTAGAACCAAAGGTCAACTTCTA 1523 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57059187010 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5