BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06905.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892618 jgi|Araly1|892618|Al_scaffold_0006_614 2460 0.0
> Ahg892618 jgi|Araly1|892618|Al_scaffold_0006_614
Length=1578
Score = 2460 bits (1332), Expect = 0.0
Identities = 1489/1567 (95%), Gaps = 2/1567 (0%)
Strand=Plus/Plus
Query 1 ATGAATTATACTTCTTGTTCATATCTCTTCTTCACACTTGTAACCATCTTCCTTCTCCAT 60
|||||||| || |||||||| ||||||||||||||| || | |||||||||||||| |||
Sbjct 13 ATGAATTACACATCTTGTTCCTATCTCTTCTTCACATTTATTACCATCTTCCTTCTTCAT 72
Query 61 AGACTCTTCAGCTCCTCTAGCCGCAGAGGTCTTCCTCCAGGTCCTCGAGGACTTCCCGTT 120
||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||| ||
Sbjct 73 AGACTCTTCAGCTCCTCAAGCCGCAGCGGTCTTCCTCCAGGTCCCCTAGGACTTCCCATT 132
Query 121 CTTGGTCATATGCATCTCCTCCGGTCTAGCCTACCACGATCTCTTCAAGCCTTGGCTCAT 180
|| ||||||||||||||||||||||||||||| || || ||||||||| ||||||||||
Sbjct 133 CTCGGTCATATGCATCTCCTCCGGTCTAGCCTCCCTCGTTCTCTTCAATCCTTGGCTCAC 192
Query 181 ACTTACGGTCCTCTCATGACCATACGCATCGGATCATTACGA-GTCCTCGTTGTCTCAGA 239
|||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||
Sbjct 193 ACTTACGGTCCTCTCATGACCATACGCATCGGATCACTAC-ATGTCCTCGTTGTCTCAGA 251
Query 240 TTCCGACACAGCTAAGCTAATCCTCAAGACTCACGACCCTGATTTCGCTTCCAAGTTTGT 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 TTCCGACACAGCTAAGCAAATCCTCAAGACTCACGACCCTGATTTCGCTTCCAAGTTTGT 311
Query 300 GTTTGGTCCGAGACAGTTCAATGTTTATAAAGGATCAGAGTTCTTTAATGCACCTTATGG 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 312 GTTTGGTCCGAGACAGTTCAATGTTTATAAAGGAGCAGAGTTCTTTAATGCACCTTATGG 371
Query 360 ATCTTACTGGAGGTTCATGAAGAAGCTATGCATGACTAAGCTATTCGCGGGTTATCAGCT 419
| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 372 ACCTTACTGGAGGTTCATGAAGAAGCTGTGCATGACTAAGCTATTCGCAGGTTATCAGCT 431
Query 420 TGATCGATTTGTCGACATAAGAGAAGAGGAAACGTTAGCTTTACTGAGCACGCTGGTTGA 479
||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||||
Sbjct 432 TGATCGATTTGTCGATATAAGAGAAGAGGAAACGTTAGCTTTACTGACCTCGCTCGTTGA 491
Query 480 GAGGTCGCGAAACGGAGAGGCTTGCGATCTCGGTTTGGAGTTCACTGCTTTGACCACAAA 539
||| ||| | || |||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 492 GAGATCGAGTAATGGAGAGGCGTGCGATCTCGGTTTGGAGTTCACCGCTTTGACCACGAA 551
Query 540 GATCTTATCAAAGATGGTTATGGGGAAAAGGTGCCGCCAAAACTCGAATATTCCCAAAGA 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 552 GATCTTATCAAAGATGGTTATGGGGAAAAGGTGCCGCCAAAACTCGGATATTCCCGTAGA 611
Query 600 GATCAGGAAGATAGTGAGTGATATTATGGCTTGCGCCACAAGGTTTGGATTCATGGAGCT 659
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GATAAGGAAGATAGTGAGCGATATTATGGCTTGCGCCACAAGGTTTGGATTCATGGAGCT 671
Query 660 ATTTGGACCATTGCGGGATCTGGATTTGTTTGGGAATGGTAAGAAGCTTAGATCCTCTAT 719
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 672 ATTTGGACCATTGCGGGATCTGGATTTGTTTGGTAATGGCAAGAAGCTTAGATCCTCCAT 731
Query 720 TTGGCGGTATGATGAGTTGGTTGAGAAGATACTGAAGGAATATGAAAACGATAAGAGCAA 779
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 732 TTGGCAGTACGATGAGTTGGTTGAGAAGATACTGAAGGAATATGAAAACGATAAGACCAA 791
Query 780 TGAGGAAGAAGAGAAAGATAAAGATATCGTCGATATCTTGTTGGACACGTATAATGACCC 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TGAAGAAGAAGAGAAAGATAAAGATATCGTCGATATCTTGTTGGACACGTATAATGACCC 851
Query 840 AAAAGCCGAACTCAGATTGACTATGAATCAGATCAAGTTCTTCATTCTTGAGTTGTTCAT 899
|||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 852 AAAAGCCGAACTCAAATTGACGATGAATCAGATCAAGTTCTTCATCCTTGAGTTGTTCAT 911
Query 900 GGCGAGCTTAGACACGACTTCTGCAGCTTTACAATGGACAATGACTGAGCTAATCAACCA 959
||| |||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 912 GGCCAGCTTAGATACAACTTCTGCAGCTTTACAGTGGACAATGACAGAGCTAATCAACCA 971
Query 960 TCCGGATATCTTCGCGAAGATCAGAGACGAGATCAAATCGGTTGTAGGAACAACGAACCG 1019
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 972 TCAGGATATCTTCGCGAAGATCAGAGACGAGATCAAATCGGTTGTAGGAACATCGAATCG 1031
Query 1020 GTTAATCAAAGAATCAGATTTGCAGAAGCTTCCTTACCTACAAGCAGCTATCAAGGAGAC 1079
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TTTAATCAAAGAATTAGACTTGCAGAAGCTTCCTTACCTACAAGCAGCTATCAAGGAGAC 1091
Query 1080 ATTGAGACTTCATCCAGTAGGACCATTACTACGCAGAGAAAGCAACACAGACATGAAGAT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 ATTGAGACTTCATCCAGTAGGACCATTACTACGCAGAGAAAGCAACACAGACATGAAGAT 1151
Query 1140 CAACGGGTACGATGTAAAATCCGGGACAAAGATCTTCATCAATGCTTACGGGATAATGCG 1199
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1152 CAACGGGTACGATGTAAAATCCGGTACAAAGATCTTCATCAATGCTTACGGGATAATGCG 1211
Query 1200 TGATCCGACCACATACAAAGACCCTGACAAGTTTATGCCAGAGAGGTTTCTTGTGGTGGA 1259
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1212 CGATCCGACCACATACAAAGACCCTGACAAGTTTATACCTGAGAGGTTTCTTGTGGTGGA 1271
Query 1260 ACAAGATACAGAGAGAAAGATGGGTTACTACCAGCAATATATGTTGGAATTAAAAGGCCA 1319
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1272 ACAAGATACAGAGAGAAAGATGGGTTATTACCAGCAATATATGTTGGAATTAAAAGGTCA 1331
Query 1320 AGATGTGAATTATCTTGCGTTTGGGAGCGGAAGACGAGGATGTCTTGGAGCTTCTCACGC 1379
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1332 AGATGTGAATTATCTTGCGTTCGGGAGCGGAAGGCGAGGATGTCTTGGAGCTTCTCACGC 1391
Query 1380 TTCTCTGGTGTTGAGTCTCACAATTGGGTCACTCGTGCAGTGTTTTAATTGGACGGTGAA 1439
|||||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1392 TTCTCTTGTGTTGAGTCTCACAATCGGATCACTCGTGCAGTGTTTTAACTGGACGGTGAA 1451
Query 1440 GGGAGATGAAGACAAAATCAAGATCAAGTTACCTACCGGCTTTTCGGCTTCAGGGACTGC 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 GGGAGATGAAGACAAAATCAAGATCAAGTTACCTACCGGCTTTTCGGCTTCAGGGACTGC 1511
Query 1500 TGGAGGAAGCTCACTTATGTGTTCTCCTGAATTATGTTTTGATCCATTTGGATACCAAAC 1559
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1512 TGGGGGAAGCTCACTTATGTGTTCTCCTGAATTATGTTTTGATCCGTTTGGATACAAAAC 1571
Query 1560 TAAGTGA 1566
|||||||
Sbjct 1572 TAAGTGA 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5