BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06920.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349957 jgi|Araly1|349957|fgenesh1_pg.C_scaffold_6000550 1570 0.0
> Ahg349957 jgi|Araly1|349957|fgenesh1_pg.C_scaffold_6000550
Length=1926
Score = 1570 bits (850), Expect = 0.0
Identities = 995/1065 (93%), Gaps = 9/1065 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTGTTGTTCATCAGATTGCTTCGTCTACTTCATCCTCTCCATTGCTTTAGCTTTC 60
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 868 ATGGGTTGTTGTTCATCAGATTGCTTCGTCTACTTCGTCCTCTCCGTTGCTTTAGCTTTC 927
Query 61 ATGGCCATCTCCACCACTCTACGTTCACCTCCGGATTCCGAACCCACAATACCCATTGCT 120
||||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 928 ATGGCCATCTCAAGCACTCTACGTTCACCTCCAGATTCCGAACCCACCATACCCATTGCT 987
Query 121 TTTTCTTCCTCTTCGCCTTCTCTCTCTTTAAACGCCTCAAACACTCTACGGCAATCTAAT 180
| ||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 988 TCTTCTTCCTCTTCGTCTTCTCTCTCTTTAAACGCCTCAAACGCTCTACGCCAATCCAAT 1047
Query 181 TTCAAAGCAATAGCCACTCTTCTCCACATCTCCCCTGAGATCTTCCTCTCTTCTTCTCCC 240
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1048 TTCAAAGCAATCGAAACTCTCCTCCACATCTCCCCTGAGATCTTCCTCTCTTCTTCTCCT 1107
Query 241 AACACAACCCTCTTTGCCATCGAAGATGCTTCCTTCTTCAACACGTCATCGCTTCATCCT 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1108 AACACAACCCTCTTTGCCATCGAAGATGCTTCCTTCTTCAACACGTCATCTCTTCATCCT 1167
Query 301 TTGTTTCTCAAGCAGCTTCTTCACTATCACACACTCCCTCTTATGCTTTCGATGGATGAC 360
||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| | |||
Sbjct 1168 TTGTTTCTCAAGCAGCTTCTTCAGTATCACACACTCCCTCATATGCTTCCGATGAACGAC 1227
Query 361 CTTCTCAAGAAGCCTCAAGGAACCTGTCTCCCAACGCTTCTCCACCACAAGAGTGTCCAA 420
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1228 CTTCTTAAGAAGCCTCAAGGAACCTGTCTCTCAACGCTTCTCCACCACAAGAGTGTTCAA 1287
Query 421 ATATCCACTGTTA-ATCAAGAATCAAGAACAGCTGAAGTCAATCATGTCCGTATCACACA 479
|| ||||| | || ||||||||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 1288 ATCTCCACCG-TAGATCAAGAATCAAGAACAGCAGAAGTGAATCATGTCCGTATCTCACA 1346
Query 480 CCCCGACATGTTTCTTGGAGATTCATTGGTCATTCACGGAGTTATTGGACCATTCTCTCC 539
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1347 TCCCGACATGTTTCTTGGAGATTCATTGGTCATTCACGGAGTTCTTGGACCATTCTCTCC 1406
Query 540 TCTGCAACCTCACAGTGATCATCTTATCCACACACCTTTATGTCAATCTGATACAACAAA 599
||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||
Sbjct 1407 TCTGCAACCTCACAGTGATCATCTTCTCCAGACATCTTTATGTCAATCTGATACAAGAAA 1466
Query 600 CAAAACCAGTAACAACGAAGAAGTTCCAGTTAGCATAGACTGGACTCGGATTGTTCAGCT 659
|||||||||| ||||||| |||||||| |||| ||||||||||| |||||||||||||||
Sbjct 1467 CAAAACCAGTGACAACGACGAAGTTCCGGTTAACATAGACTGGATTCGGATTGTTCAGCT 1526
Query 660 TCTAAGTTCAAATGGGTTTGTGCCATTTGCAATTGGATTGCACTCTGTTCTCAACAGGAT 719
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1527 CCTAAGTTCAAATGGGTTTGTGCCATTTGCAATTGGACTGCACTCTGTTCTCAATAGGAT 1586
Query 720 TGTGAACGATCATAATCATCACAAGAACTTGACCGGTGTAACGATTCTAGCTACACCGAA 779
||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1587 TGTGAACGATC---ATCATCACAAGAACCTGACCGGTGTAACGATTCTAGCCACACCGAA 1643
Query 780 TCTGGTCTCATTGTCATCTGCTTCTCCGTTTTTGTATGAAGTTGTGAGACATCACATTCT 839
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1644 TCTGGTCTCGTTGTCATCTGCTTCTCCGTTTCTGTATGAAGTTGTGAGACATCACATTCT 1703
Query 840 TGTTCAACGGCTTACATACAAAGATTTTGCTTCAATGTCTGATAAAGCCACAGTGAAGAC 899
|| ||||||||| ||| |||||||||||||||||||| ||||||||||| || |||||||
Sbjct 1704 TGCTCAACGGCTAACAAACAAAGATTTTGCTTCAATGCCTGATAAAGCCTCATTGAAGAC 1763
Query 900 ATTGGATCCTTACCAAGATCTTACAATCACGAGAAGAAATGTTAATTCGTC-TGGAGGAG 958
||||||||||||||||||||| |||||||| ||||||||||| |||||||| | ||||
Sbjct 1764 ATTGGATCCTTACCAAGATCTGACAATCACCAGAAGAAATGTCAATTCGTCAT-CTGGAG 1822
Query 959 ATTTCATGATTTCTGGAGTTGAGATTGTAGATCCAGATATGTTCTCTTCTTCC-AACTTT 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1823 ATTTCATGATTTCTGGAGTTGAGATTGTAGATCCAGATATGTTCTCTTCTTCAGAA-TTT 1881
Query 1018 GTAATTCATGGAATATCACACACTCTAGAGATCCCACATGTATAA 1062
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1882 GTAATTCATGGAATATCACACACTCTAGAGATCCCACATGTTTAA 1926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5