BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06930.1
Length=2502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487508 jgi|Araly1|487508|fgenesh2_kg.6__642__AT5G06930.1 3264 0.0
> Ahg487508 jgi|Araly1|487508|fgenesh2_kg.6__642__AT5G06930.1
Length=2453
Score = 3264 bits (1767), Expect = 0.0
Identities = 2192/2391 (92%), Gaps = 54/2391 (2%)
Strand=Plus/Plus
Query 140 GATGAAAAGATTCGAGAGGCCAAGAACTTCGATTCACTCGCAGCCAAGGACCAGTACCAG 199
|||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 87 GATGAAGAGATTCGAGAGGCCAAGAACTTCGACTCACTCGCAGCCAAGAACCAGTACCAA 146
Query 200 TTCAG-GTAAGAAAGATCAGAAGCCGCGTAGTAGTAGTAGTAAAGGATCTGGTGTGAAAC 258
||||| | |||||||||||||| |||||||||||||||| || ||| |||| ||||||
Sbjct 147 TTCAGCG-AAGAAAGATCAGAAACCGCGTAGTAGTAGTA--AAGGGA-ATGGTTTGAAAC 202
Query 259 CGTTGAATGCGGCTCAGCTGGTTTCTAGAGTTTTAGATGCAACAACAGCTTCTGAGCCTT 318
||||||||||||||||||||||||| ||||||||||||| | || |||||||||||||
Sbjct 203 CGTTGAATGCGGCTCAGCTGGTTTCCAGAGTTTTAGATG---CGACTGCTTCTGAGCCTT 259
Query 319 CTTCAGTCGCTGTAACTGATTCAACTACTGGATCAGAGTCTTCTGAAGTCTATGAGAATG 378
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 260 CATCAATAGCTGTAACTGATTCAACTACTGGATCAGAGTCTTCTGAAGTCTATGACAATG 319
Query 379 TGAATGTGCATTACATGGATGATGCTAATGAGAAATCAAGAACTGATGGCAATCTAGTGG 438
||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||
Sbjct 320 TGAATGTGCATTACATGGATGATGCTAATGATAAATCAAGAAATGATGGGAATCTGGTGG 379
Query 439 GTTGTGAAGAAGAAGAAGGTAATGGTGATGAATCAGACACTGAGACAAACAATGGGTCTG 498
|||| |||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 380 ATTGT---CAAGAAGAAGGTAATGGTGATGAATCAGACACTGAAACAAACAATGATTCTG 436
Query 499 T-TTCTTGGTCTCAATGTGAACTGTTTTCCCCTGAAGAGAAGAAATCAGAAAGACCATCA 557
| || || |||||| |||| ||||||||| |||||| |||||||||||||| ||||||
Sbjct 437 TGTT-TTCTTCTCAAGGTGATTTGTTTTCCCATGAAGATAAGAAATCAGAAAGGCCATCA 495
Query 558 ATGGTTTCCAAAAGTAAAAGCTCTCAGGATAGA-CCTTTAACATCTAAAGGACGTACTAA 616
||||||||||| || |||||||||||||||| | ||||| ||||||||||||||||| ||
Sbjct 496 ATGGTTTCCAAGAGCAAAAGCTCTCAGGATACACCCTTT-ACATCTAAAGGACGTACCAA 554
Query 617 TATTGCTGATTCGGTTAGATCTCGATCCAATACCTTCCACAG-TACTGCTAGAAAGACAG 675
|||| |||||||||||||||||||||||||||||||||| | | ||||||||||||| |
Sbjct 555 CATTGGTGATTCGGTTAGATCTCGATCCAATACCTTCCACGGCT-CTGCTAGAAAGACCG 613
Query 676 TAAGATCGAGTAAGAGTCAGGCAAAAGCTTTGTCTGATTTCTCCTCTTATAGAAGCTCTG 735
||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 614 TAAGATCAAGTAAAAGTCAGGCAAAAGCTTTGTCTGAATTCTCATCTTATAGAAGCTCTG 673
Query 736 AAAACAACAAGGCTTTCTCTTCTGCTTCACCAGTTGATTCAACGCCTTTTGAGGAGGGGA 795
||||||||| |||| ||||| ||||||||||||||||||| ||| |||||||||||| ||
Sbjct 674 AAAACAACAGGGCTCTCTCTCCTGCTTCACCAGTTGATTCCACGTCTTTTGAGGAGGCGA 733
Query 796 AAGAAGATGATGAGTTTGAAGATGCTTTGAATAGCGTTCATAACAATGAGAGTGATAATG 855
||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||| ||||
Sbjct 734 AAGAAGATGATGAGTTTGAAGATGCCTTGAATAGCGTTAATAACACTGAAAGTGACAATG 793
Query 856 AAACACTTGTGTACAAGGAGAAGAAAAGGAGTGATGTGGAGAAAGTCTTAGCTCAAAAGA 915
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 794 AAACACTTGTGTACAAGGAGAACAAAAGGAGTGAAGTGGAGAAAGTCTTAGCTCAAAAGA 853
Query 916 TTGAGACCATGGAAGCTCGAATCGAGAAACTTGAAGAAGAGTTGAGAGAAGTGGCTGCTC 975
|||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 854 TTGAGACCATGGAAACTCGAATCGAGAAACTTGAAGAAGAGCTGAGAGAAGTTGCTGCTC 913
Query 976 TTGAGATGTCACTATACTCTGTATTTCCAGAACATGGGAGCTCATCACACAAGTTGCATA 1035
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
Sbjct 914 TTGAGATGTCACTATACTCTGTATTTCCAGAACATGAGAGCTCATCACACAAGCTGCACA 973
Query 1036 AACCTGCAAGAAATCTTTCTAGACTCTATGCACTTGCTAGAAAAAATCAGAGTGAAAACA 1095
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 AACCTGCAAGAGACCTTTCTAGACTCTATGCACTTGCTAGAAAAAATCAGAGTGAAAACA 1033
Query 1096 AGATAATCTCAGTAACCAAAAACATTGTGTCTGGTCTGTCCTTGTTGCTGAAATCCTGTG 1155
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1034 AGTTAATCTCAGTAACCAAAAACATTGTGTCTGGTCTGTCCTTGTTGCTAAAATCCTCTG 1093
Query 1156 GAAGTGATGTATCGAGGTTAACTTACTGGTTGTCCAACACTGTCATGTTGCGAGAGATCA 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 GAAGTGATGTATCGAGGTTAACTTACTGGTTGTCCAACACTGTCATGTTGCGAGAGATCA 1153
Query 1216 TTTCACTGGATTTTGGTAGCTCAAAGCTAAATGGATTAAATTCTCTTAAAGAAGATTGGG 1275
|||||| ||| |||||| || |||| ||||| ||| ||||||||||| |||||||||||
Sbjct 1154 TTTCACAGGAATTTGGTGGCACAAATCTAAAAGGACTAAATTCTCTTGAAGAAGATTGGA 1213
Query 1276 GTGATGTGAGAACTCTGATAGCGGCATTAAGAAGAGTTGAATCATGTTT-TTTCACCCAA 1334
|||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct 1214 CCAATGTGAGAACTCTGATAGTGGCATTAAGAAGAGTTGAATCATGTTTATTT-ACCCAA 1272
Query 1335 GCAGTTGAATCTATCTGGTCACAGGTAATGATGGTTCATATGATACCTCAAGGAGTAGAC 1394
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1273 GCAGTTGAATCTATATGGTCACAGGTAATGATGGTTCATATGAGACCTCAAGGAGTAGAT 1332
Query 1395 TCGACGATGGGTGAAATGATCGGTAATTTTTCAGAACCAGCAACATGTGACCGGTTACAA 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TCGACGATGGGTGAAATGATCGGTAATTTTTCAGAACCAGCAACATGTGACCGGTTACAA 1392
Query 1455 GAGAGCTTTTCTGTTAACCTATGGAAAGAAG-CTTTTGAGGAGGCTCTTCAACGGCTATG 1513
||||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||| ||
Sbjct 1393 GAGAGCTTTTCTGTTAACCTATGGAAA-AAGGCTTTTGAGGAGGCTCTTCAGCTGCTCTG 1451
Query 1514 TCCTGTTCAGGCAACAAGGCGTCAATGTGGTTGTTTGCATGTGTTGACCAGAATGGTTAT 1573
||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| ||
Sbjct 1452 TCCTGTTCAAGCAACAAGGCGTCAATGTGGTTGTTTGCATGTATTGATCAGAATGGTAAT 1511
Query 1574 GGAGCAATGCATTGTAAGACTTGATGTGGCTATGTTCAATGCTATTCTCCGTGAGTCGGC 1633
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1512 GGAGCAATGCATTGTAAGACTTGATGTGGCTATGTTCAATGCTATTCTCCGTGAGTGGGC 1571
Query 1634 TCATCACATACCGACTGACTCTGCCTCTGATCCCATTGCTGACTCAAGAGTTCTGCCAAT 1693
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 TCATCAGATACCGACAGACTCTGCCTCTGATCCCATTGCTGACTCAAGAGTTCTGCCAAT 1631
Query 1694 TCCAGCAGGGGTTTTGAGCTTTGAATCTGGAGTAAAACTGAAAAACACGGTTAGTTACTG 1753
|||||||||||||||||||||||||||||| || ||||| ||||||||| || | |||||
Sbjct 1632 TCCAGCAGGGGTTTTGAGCTTTGAATCTGGGGTGAAACTAAAAAACACGATTGGCTACTG 1691
Query 1754 GTCGAGATTGCTTACAGACATCTTTG-G---GAT-T-GATG-TT----G-A---GCA--A 1796
|||||||||||| ||||||||||||| | ||| | ||| || | | | | |
Sbjct 1692 GTCGAGATTGCTGACAGACATCTTTGAGCTCGATGTTGATCATTCTTCGGAAAAGGAGCA 1751
Query 1797 A-AAATGCAGAGAGGAGATGAGACATTTAAACCTTTCCACTTGCTCAATGAACTGAGTGA 1855
| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1752 ACAAATGCAAAGAGGAGATGAGACATTTAAACCTTTCCATTTGCTCAATGAACTGAGTGA 1811
Query 1856 TCTCCTTATGCTTCCAAAAGAAATGTTTGTGGACAGTTCCACCAGAGATGAGGTCTGCCC 1915
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1812 TCTCCTTATGCTTCCAAAAGAAATGCTTGTGGATAGTTCCACCAGAGATGAGGTCTGCCC 1871
Query 1916 ATCAATTGGCCTGAGTTTGATAAAAAGGATAGT-ATGCAATTTCACCCCCGATGAATTCT 1974
|||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| |
Sbjct 1872 ATCAATTGGCCTGAGTTTGATAAAAAGGAT-GTTATGCAATTTCACCCCGGATGAATTTT 1930
Query 1975 GCCCGTATCCTGTTCCAGGAACTGTGCTTGAGGAACTCAACGCTCAGAGCATACTTGAGA 2034
||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1931 GCCCGTACCCTGTTCCAGGAACTGTTCTTGAGGAACTCAATGCTCAGAGCATACTTGAGA 1990
Query 2035 ATAGAAGCTTATCTAGAGATACAGCTAGAGGCTTTCCTCGGCAAGTCAATCCGGTTTCAT 2094
|||||||| |||| ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 1991 GTAGAAGCTCATCTGGAGATGCAACTAGATGCTTTCCTCGGCAAGTCAATCCGGTTTCAT 2050
Query 2095 ATTCTCCTCC-TTCTTGTAGCCACTTGACAGACATTGTTGCAGAGTTCAGTGTCAAACTT 2153
||| || ||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2051 ATTATC-TCCCTTCTTGTAGCCACTTGACAGACATTGTTGCAGAGTTCAGTGTCACACTT 2109
Query 2154 AAGCTTTCTATGACACACAAAAATGGATACAGCAGCAACGAGAAGGTAGAAACACCAAGA 2213
||||||||||||||||| ||||| ||||||||| |||||||| ||||||||||| |||||
Sbjct 2110 AAGCTTTCTATGACACAAAAAAAAGGATACAGCCGCAACGAGGAGGTAGAAACATCAAGA 2169
Query 2214 TCTCCTCCATACTACAACGTCATCAAAGGGGCTGTAGCGAAGGATAACC-TCAATCTTTC 2272
|||||||||||||||||| || | |||||||||| || ||||||| || ||||| ||||
Sbjct 2170 TCTCCTCCATACTACAACATCCTTAAAGGGGCTGAAGAAAAGGATA-CCATCAATTTTTC 2228
Query 2273 TGAGACTAATGAAAGATACAGACTCCTTGGAGAAGCCTAAACCTGGCTTAAATTACCAGA 2332
| ||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 2229 TCAGACTAACGAAAGATACAGACTCCTTGGAG---CCTAAACCTGGCTTAAATGACCAGA 2285
Query 2333 AAGTGCCTGCGGAAATTCCAAA-CTTATCGGGAAGTACATT-AAAAGTCCAATTCTTATT 2390
||| |||||| ||||||| ||| || || |||||||||| | |||| |||||||||||||
Sbjct 2286 AAGCGCCTGCAGAAATTC-AAAGCTCATTGGGAAGTACACTCAAAA-TCCAATTCTTATT 2343
Query 2391 ATCCTTGAAGATCAAATGACCAATGTACATTACTACATACTC-TAATGTTACACAAACAA 2449
||||||||| |||||||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct 2344 ATCCTTGAACATCAAATGACCAATGTACATTAATACATACTCGTA-TGTTACACAAACAA 2402
Query 2450 AACATACCATCTTGCTCTTGGACCATTTCCATAAAAGCTTGATTTTTGAGT 2500
|||||||||||||||||||||||| |||| |||||||||| ||||||||||
Sbjct 2403 AACATACCATCTTGCTCTTGGACCGTTTCAATAAAAGCTTCATTTTTGAGT 2453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94311446620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5