BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06940.1 Length=2619 Score E Sequences producing significant alignments: (Bits) Value Ahg487509 jgi|Araly1|487509|fgenesh2_kg.6__643__AT5G06940.1 3598 0.0 > Ahg487509 jgi|Araly1|487509|fgenesh2_kg.6__643__AT5G06940.1 Length=2586 Score = 3598 bits (1948), Expect = 0.0 Identities = 2198/2320 (95%), Gaps = 12/2320 (1%) Strand=Plus/Plus Query 1 ATGGCTACCAGATTCAAGCACCAGTTTTCAATCTCACTAGCCTTGACATTCTTCTTCTTC 60 ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||| Sbjct 1 ATGGCTACCAGATTCAAGCACCAATTCTCAATCTCACTAGCCTTCACA---TTCTTCTTC 57 Query 61 TTCACCAAGACCTTCTCTTTCACAGAGAA-CGAGGAACTTGGTAACCTTCTCAGATTCAA 119 |||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| Sbjct 58 TTCACCAAGACCTTCTCTTTCACAGA-AACCGAGGAACTTGGTAATCTTCTCAGATTCAA 116 Query 120 AGCCTCCTTTGATGATCCAAAAGGCTCTCTTTCAGGTTGGTTTAACACTTCTTCTTCGCA 179 ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| || Sbjct 117 AGCCTCCATTGATGATCCAAAGGGCTCTCTTTCAGGTTGGTTAAACACTTCTTCTTCTCA 176 Query 180 CCATTGTAACTGGACTGGTATCACATGTACTAGAGCTCCTACTCTTTACGTCTCTTCCAT 239 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 177 CCATTGTAACTGGACTGGTATCACATGTACCAGAGCTCCTTCTCTTTACGTCTCTTCCAT 236 Query 240 TAACCTTCAAAGTTTGAATCTTTCTGGTGAAATCTCTGACTCCATTTGTGACCTCCCTTA 299 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 TAATCTTCAAAGTTTGAATCTTTCTGGTGAAATCTCTGACTCCATTTGTGACCTCCCTTA 296 Query 300 CCTCACTCACCTTGACCTCTCCTTGAACTTCTTCAATCAGCCTATCCCACTTCAGTTGTC 359 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct 297 CCTCACTCACCTTGACCTCTCCTTAAACTTCTTCAATCAGCCAATCCCACTTCATTTGTC 356 Query 360 TCGTTGTGTTACTTTAGAGACTCTTAATCTCAGCTCTAATCTCATCTGGGGCACAATCCC 419 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 357 TCGTTGTCTTACTTTAGAGACTCTTAATCTCAGCTCTAATCTCATTTGGGGCACAATCCC 416 Query 420 TGATCAGATTTCTGAGTTTAGTTCCTTGAAAGTTATTGACTTTAGCAGTAACCATGTCGA 479 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 417 TGATCAGATTTCTGAGTTTAGTTCCTTGAAAGTTCTTGACTTTAGCAGCAACCATGTCGA 476 Query 480 AGGTATGATTCCAGAAGATTTAGGGTTATTGTTTAATCTCCAAGTTCTCAACTTGGGAAG 539 |||| |||||| |||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 477 GGGTAAGATTCCTGAAGATTTAGGGTTATTGTTCAATCTGCAAGTTCTCAACTTGGGAAG 536 Query 540 TAATTTGCTCACTGGTATCGTCCCTCCTGCTATTGGGAAGCTAAGTGAGCTTGTTGTTCT 599 ||||||||| ||||||||||| ||| |||| |||||||||||||||||||| |||||||| Sbjct 537 TAATTTGCTTACTGGTATCGTTCCTTCTGCAATTGGGAAGCTAAGTGAGCTCGTTGTTCT 596 Query 600 TGATTTGTCTGAAAACAGCTATTTGGTTAGTGAGATTCCTTCTTTTCTTGGGAAGCTAGA 659 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 597 TGATTTGTCTGCAAACAGCTATTTGGTTAGTGAGATTCCTTCTTTTATTGGGAAACTAGA 656 Query 660 CAAGCTTGAACAGCTTCTGTTGCATAGGTCAGGGTTCCATGGAGAGATT-CCTACTTCGT 718 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 657 CAAGCTTGAACAGCTTCTGTTGCATAGGTCAGGGTTCCATGGAGAGATTCCCT-CTTCGT 715 Query 719 TTGTTGGTTTGACAAGTTTGAGAACCTTGGATCTGAGTTTGAACAACCTGAGTGGTGAGA 778 ||| ||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||| Sbjct 716 TTGATGGTTTGACAAGTTTGAAAACGTTGGATCTGTGTCTGAACAACCTGAGTGGTGAGA 775 Query 779 TTCCTCGATCATTAGGCCCTTCTCTCAAGAACTTAGTGTCTCTTGATGTCTCACAGAATA 838 |||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 776 TTCCTCGATCGGTAGGGCCTTCTCTCAAAAACTTAGTGTCTCTTGATGTCTCACAGAATA 835 Query 839 AGTTATCTGGCTCTTTCCCTAGTGGCATTTGCAGTGGTAAAAGGCTTATTAACCTTTCTC 898 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 836 AGTTATCTGGCTCTTTCCCTAGTGGCATTTGCAGTGGTAAAAGGCTCATTAACCTTTCTC 895 Query 899 TCCACTCGAATTTCTTTGAAGGGTCATTGCCTAACTCCATTGGTGAATGCCTTAGTCTGG 958 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 TGCATTCGAATTTCTTTGAAGGGTCATTGCCTAACTCCATTGGTGAATGCCTTAGTCTGG 955 Query 959 AGAGGCTTCAAGTGCAGAACAATGGATTTTCTGGTGAGTTTCCAGTTGTGTTGTGGAAAT 1018 ||| | |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 956 AGATGTTTCAAGTGCAGAACAATGGATTCTCTGGTGAGTTTCCAGTTGTGTTATGGAAAT 1015 Query 1019 TACCCAGGATTAAGATTATTAGAGCGGATAATAATCGGTTCACAGGTCAAGTGCCAGAGT 1078 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1016 TACCCAAGATTAAGATTATTAGAGCGGATAATAATCGGTTCACAGGTCAAGTGCCTGATT 1075 Query 1079 CTGTGTCTTTGGCTTCTGCATTGGAGCAAGTTGAGATAGTCAACAATTCCTTTTCTGGTG 1138 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 1076 CTGTGTCTTTGGCTTCTGCATTGGAGCAAGTTGAGATAGACAACAATTCTTTTTCTGGTG 1135 Query 1139 AAATCCCACATGGTCTTGGATTGGTTAAGAGCTTGTATAAGTTTTCTGCTTCACAAAACC 1198 |||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| Sbjct 1136 AAATCCCACATGGTCTTGGACTGGTTAAGAGCTTGTACAAGTTTTCTGCTTCAGAAAACG 1195 Query 1199 GGTTTAGTGGAGAGTTACCGCCGAATTTTTGCGACTCACCTGTCCTTAGTATTGTAAACA 1258 ||||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1196 GGTTTGGTGGGGAGTTACCGCCGAATTTTTGTGACTCACCTGTTCTTAGTATTGTAAACA 1255 Query 1259 TCTCTCACAATAGGCTCTTAGGAAAGATCCCAGAACTGAAAAACTGCAAGAAGCTTGTCT 1318 |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| Sbjct 1256 TCTCTCACAATAGGCTCTTAGGGAAGATCCCAGAACTGAAGAATTGCAAGAAGCTTGTCT 1315 Query 1319 CTTTGTCTCTAGCAGGCAATGCATTCACCGGAGAAATCCCGCCATCACTTGCTGATTTAC 1378 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1316 CTTTGTCTCTAGCAGGCAATGCATTTACTGGAGAAATCCCGCCATCACTTGCTGATTTAC 1375 Query 1379 ATGTTCTGACCTATCTTGATCTATCTGATAATAGTCTTACTGGTTTGATCCCTCAAGGCT 1438 |||||||||| |||||||||||||||||||||||||||||||||||||| |||| || || Sbjct 1376 ATGTTCTGACTTATCTTGATCTATCTGATAATAGTCTTACTGGTTTGATTCCTCCAGACT 1435 Query 1439 TACAGAACCTAAAGCTTGCTCTTTTTAACGTGTCATTCAATGGATTATCAGGTGAGGTAC 1498 |||||||||| ||||||||||| || ||||||||||||||| |||||||||||||||||| Sbjct 1436 TACAGAACCTGAAGCTTGCTCTCTTCAACGTGTCATTCAATAGATTATCAGGTGAGGTAC 1495 Query 1499 CTCACTCTCTGGTCTCCGGGTTACCAGCTTCCTTTCTGCAAGGAAATCCTGAGCTTTGTG 1558 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1496 CTCACTCTCTGGTTTCCGGGTTACCAGCTTCCTTTCTGCAAGGAAATCCCGAGCTTTGTG 1555 Query 1559 GACCCGGTTTACCCAATTCTTGCTCCTCTGATCGGTCTAACTTCCATAAAAAAGGTGGTA 1618 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1556 GACCCGGTTTACCCAATTTTTGCTCCTCTGATCGGTCTAACTTCCATAAAAAAGGTGGTA 1615 Query 1619 AAGCGTTGGTGTTATCTTTGATATGTTTAGCACTTGCTATTGCCACTTTCCTTGCGGTGT 1678 ||||||||||| || ||||||||||||||||| |||||||||||||||| || ||||||| Sbjct 1616 AAGCGTTGGTGCTAGCTTTGATATGTTTAGCATTTGCTATTGCCACTTTACTCGCGGTGT 1675 Query 1679 TATATCGTTATTCTCGAAAGAAAGTGCAATTCAAGAGTACTTGGCGCTCGGAGTTTTATT 1738 ||||||| |||| ||||||||||| |||||| ||||||||||||||||| |||||||||| Sbjct 1676 TATATCGGTATTTTCGAAAGAAAGCGCAATTTAAGAGTACTTGGCGCTCAGAGTTTTATT 1735 Query 1739 ATCCCTTCAAGTTAACTGAGCATGAGTTGATGAAAGTGGTGAATGAAAGTTGTCCTTCCG 1798 ||||| |||||||||| |||||||||||||||||||||||||||| || |||||||||| Sbjct 1736 ATCCCCTCAAGTTAACCGAGCATGAGTTGATGAAAGTGGTGAATG-AA--TGTCCTTCCG 1792 Query 1799 GAAGTGAAGTATACGTTCTCAGTTTATCTAGTGGGGAGTTATTAGCTGTGAAGAAGCTTG 1858 | |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 1793 GGAGTGAAGTATACGTTCTCAGTTTATCAAGTGGGGAGTTAATAGCTGTGAAGAAGCTTG 1852 Query 1859 TGAATTCTAAGAATATATCCTCGAAATCTCTGAAAGCTCAAGTGAGAACCATAGCAAAGA 1918 |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1853 TGAATTCTAAGAATATATCCTCGAAAGCTCTGAAAGCTCAAGTGAGAAGCATAGCAAAGA 1912 Query 1919 TACGGCATAAGAACATTACTCGAATTCTTGGGTTTTGCTTCAAAGACGAGA-TGATCTTC 1977 ||||||||||||||||||||||||||||||||||||| |||| || || | |||||||| Sbjct 1913 TACGGCATAAGAACATTACTCGAATTCTTGGGTTTTGTTTCACTGATGA-ATTGATCTTC 1971 Query 1978 TTGATCTATGAATTCACACAAAATGGTAGCTTACATGATATGCTATCGAGAGCTGGCGAC 2037 ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1972 TTGATCTATGAGTTCACACAAAATGGTAGCTTACATGATATACTATCGAGACCTGGCGAC 2031 Query 2038 CAACTGCCGTGGAGTATTAGGTTGAAGATAGCACTAGGTGTTGCTCAAGCATTGGCTTAC 2097 ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 2032 CAACTTCCGTGGAGCATTAGATTGAAGATAGCGCTAGGTGTTGCTCAAGCATTGGCATAC 2091 Query 2098 ATTAGCAAAGACTATGTGCCACACTTACTCCATAGGAACCTAAAATCAGCAAACATTTTC 2157 ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 2092 ATTAGCAAAGATTATGTGCCACACTTACTCCATAGGAACCTAAAGTCAGCAAACATTCTC 2151 Query 2158 TTGGACAAAGATTTCGAACCCAAGCTCTCTGATTTTGCTCTTGACCATATCGTTGGAGAA 2217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2152 TTGGACAAAGATTTCGAACCCAAGCTCTCTGATTTTGCTCTTGACCATATCGTTGGAGAA 2211 Query 2218 ACTGCTTTTCAGTCTCTGGTACATGCAAACACCAACTCCTGCTATACTGCACCAGAAAAC 2277 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2212 ACTGCTTTTCAGTCTCTGGTACATGCAAACTCCAACTCCTGCTATACTGCACCAGAAAAC 2271 Query 2278 CATTACAGCAAGAAAGCAACAGAAGATATGGATGTTTACA 2317 ||||||||||||||||||||||||||||||||||||||| Sbjct 2272 AATTACAGCAAGAAAGCAACAGAAGATATGGATGTTTACA 2311 Score = 361 bits (195), Expect = 2e-98 Identities = 222/235 (94%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 2371 GAAGAAGGCTCTTCTGGGGAGTCCCTTGACATAGTGAAGCAGGTCAGGAGGAAGATAAAC 2430 ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2320 GAAGAAGGCGCATCTAGGGAGTCCCTTGACATAGTGAAGCAGGTCAGGAGGAAGATAAAC 2379 Query 2431 CTGACAGATGGAGCTGCACAAGTTCTTGACCAAAAGATCTTGTCCGATTCTTGCCAATCA 2490 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2380 CTGACAGATGGAGCTGGGCAAGTTCTTGACCAAAAGATCTTGTCCGATTCTTGCCAATCA 2439 Query 2491 GACATGCGAAAGACCTTAGACATTGCTCTAGATTGCACCGCCGTTGCTGCAGAGAAACGA 2550 || |||| |||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 2440 GAGATGCTAAAGACCTTAGATATTGCTCTAGATTGTACCGCCGTTGCTGCAGAGAAACGA 2499 Query 2551 CCTTCACTGGTTAAAGTTATTAAA-CTGCTTGAGGGTATTAGTTCTTCTGTCTCA 2604 |||||| ||||| ||||||||||| | |||||||||||||||||||||||||||| Sbjct 2500 CCTTCATTGGTTCAAGTTATTAAAGC-GCTTGAGGGTATTAGTTCTTCTGTCTCA 2553 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98768005285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5