BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06940.1
Length=2619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487509 jgi|Araly1|487509|fgenesh2_kg.6__643__AT5G06940.1 3598 0.0
> Ahg487509 jgi|Araly1|487509|fgenesh2_kg.6__643__AT5G06940.1
Length=2586
Score = 3598 bits (1948), Expect = 0.0
Identities = 2198/2320 (95%), Gaps = 12/2320 (1%)
Strand=Plus/Plus
Query 1 ATGGCTACCAGATTCAAGCACCAGTTTTCAATCTCACTAGCCTTGACATTCTTCTTCTTC 60
||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||
Sbjct 1 ATGGCTACCAGATTCAAGCACCAATTCTCAATCTCACTAGCCTTCACA---TTCTTCTTC 57
Query 61 TTCACCAAGACCTTCTCTTTCACAGAGAA-CGAGGAACTTGGTAACCTTCTCAGATTCAA 119
|||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||
Sbjct 58 TTCACCAAGACCTTCTCTTTCACAGA-AACCGAGGAACTTGGTAATCTTCTCAGATTCAA 116
Query 120 AGCCTCCTTTGATGATCCAAAAGGCTCTCTTTCAGGTTGGTTTAACACTTCTTCTTCGCA 179
||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 117 AGCCTCCATTGATGATCCAAAGGGCTCTCTTTCAGGTTGGTTAAACACTTCTTCTTCTCA 176
Query 180 CCATTGTAACTGGACTGGTATCACATGTACTAGAGCTCCTACTCTTTACGTCTCTTCCAT 239
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 177 CCATTGTAACTGGACTGGTATCACATGTACCAGAGCTCCTTCTCTTTACGTCTCTTCCAT 236
Query 240 TAACCTTCAAAGTTTGAATCTTTCTGGTGAAATCTCTGACTCCATTTGTGACCTCCCTTA 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TAATCTTCAAAGTTTGAATCTTTCTGGTGAAATCTCTGACTCCATTTGTGACCTCCCTTA 296
Query 300 CCTCACTCACCTTGACCTCTCCTTGAACTTCTTCAATCAGCCTATCCCACTTCAGTTGTC 359
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 297 CCTCACTCACCTTGACCTCTCCTTAAACTTCTTCAATCAGCCAATCCCACTTCATTTGTC 356
Query 360 TCGTTGTGTTACTTTAGAGACTCTTAATCTCAGCTCTAATCTCATCTGGGGCACAATCCC 419
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 357 TCGTTGTCTTACTTTAGAGACTCTTAATCTCAGCTCTAATCTCATTTGGGGCACAATCCC 416
Query 420 TGATCAGATTTCTGAGTTTAGTTCCTTGAAAGTTATTGACTTTAGCAGTAACCATGTCGA 479
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 417 TGATCAGATTTCTGAGTTTAGTTCCTTGAAAGTTCTTGACTTTAGCAGCAACCATGTCGA 476
Query 480 AGGTATGATTCCAGAAGATTTAGGGTTATTGTTTAATCTCCAAGTTCTCAACTTGGGAAG 539
|||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 477 GGGTAAGATTCCTGAAGATTTAGGGTTATTGTTCAATCTGCAAGTTCTCAACTTGGGAAG 536
Query 540 TAATTTGCTCACTGGTATCGTCCCTCCTGCTATTGGGAAGCTAAGTGAGCTTGTTGTTCT 599
||||||||| ||||||||||| ||| |||| |||||||||||||||||||| ||||||||
Sbjct 537 TAATTTGCTTACTGGTATCGTTCCTTCTGCAATTGGGAAGCTAAGTGAGCTCGTTGTTCT 596
Query 600 TGATTTGTCTGAAAACAGCTATTTGGTTAGTGAGATTCCTTCTTTTCTTGGGAAGCTAGA 659
||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 597 TGATTTGTCTGCAAACAGCTATTTGGTTAGTGAGATTCCTTCTTTTATTGGGAAACTAGA 656
Query 660 CAAGCTTGAACAGCTTCTGTTGCATAGGTCAGGGTTCCATGGAGAGATT-CCTACTTCGT 718
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 657 CAAGCTTGAACAGCTTCTGTTGCATAGGTCAGGGTTCCATGGAGAGATTCCCT-CTTCGT 715
Query 719 TTGTTGGTTTGACAAGTTTGAGAACCTTGGATCTGAGTTTGAACAACCTGAGTGGTGAGA 778
||| ||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||
Sbjct 716 TTGATGGTTTGACAAGTTTGAAAACGTTGGATCTGTGTCTGAACAACCTGAGTGGTGAGA 775
Query 779 TTCCTCGATCATTAGGCCCTTCTCTCAAGAACTTAGTGTCTCTTGATGTCTCACAGAATA 838
|||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 776 TTCCTCGATCGGTAGGGCCTTCTCTCAAAAACTTAGTGTCTCTTGATGTCTCACAGAATA 835
Query 839 AGTTATCTGGCTCTTTCCCTAGTGGCATTTGCAGTGGTAAAAGGCTTATTAACCTTTCTC 898
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 836 AGTTATCTGGCTCTTTCCCTAGTGGCATTTGCAGTGGTAAAAGGCTCATTAACCTTTCTC 895
Query 899 TCCACTCGAATTTCTTTGAAGGGTCATTGCCTAACTCCATTGGTGAATGCCTTAGTCTGG 958
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TGCATTCGAATTTCTTTGAAGGGTCATTGCCTAACTCCATTGGTGAATGCCTTAGTCTGG 955
Query 959 AGAGGCTTCAAGTGCAGAACAATGGATTTTCTGGTGAGTTTCCAGTTGTGTTGTGGAAAT 1018
||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 956 AGATGTTTCAAGTGCAGAACAATGGATTCTCTGGTGAGTTTCCAGTTGTGTTATGGAAAT 1015
Query 1019 TACCCAGGATTAAGATTATTAGAGCGGATAATAATCGGTTCACAGGTCAAGTGCCAGAGT 1078
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1016 TACCCAAGATTAAGATTATTAGAGCGGATAATAATCGGTTCACAGGTCAAGTGCCTGATT 1075
Query 1079 CTGTGTCTTTGGCTTCTGCATTGGAGCAAGTTGAGATAGTCAACAATTCCTTTTCTGGTG 1138
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1076 CTGTGTCTTTGGCTTCTGCATTGGAGCAAGTTGAGATAGACAACAATTCTTTTTCTGGTG 1135
Query 1139 AAATCCCACATGGTCTTGGATTGGTTAAGAGCTTGTATAAGTTTTCTGCTTCACAAAACC 1198
|||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||
Sbjct 1136 AAATCCCACATGGTCTTGGACTGGTTAAGAGCTTGTACAAGTTTTCTGCTTCAGAAAACG 1195
Query 1199 GGTTTAGTGGAGAGTTACCGCCGAATTTTTGCGACTCACCTGTCCTTAGTATTGTAAACA 1258
||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1196 GGTTTGGTGGGGAGTTACCGCCGAATTTTTGTGACTCACCTGTTCTTAGTATTGTAAACA 1255
Query 1259 TCTCTCACAATAGGCTCTTAGGAAAGATCCCAGAACTGAAAAACTGCAAGAAGCTTGTCT 1318
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1256 TCTCTCACAATAGGCTCTTAGGGAAGATCCCAGAACTGAAGAATTGCAAGAAGCTTGTCT 1315
Query 1319 CTTTGTCTCTAGCAGGCAATGCATTCACCGGAGAAATCCCGCCATCACTTGCTGATTTAC 1378
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1316 CTTTGTCTCTAGCAGGCAATGCATTTACTGGAGAAATCCCGCCATCACTTGCTGATTTAC 1375
Query 1379 ATGTTCTGACCTATCTTGATCTATCTGATAATAGTCTTACTGGTTTGATCCCTCAAGGCT 1438
|||||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 1376 ATGTTCTGACTTATCTTGATCTATCTGATAATAGTCTTACTGGTTTGATTCCTCCAGACT 1435
Query 1439 TACAGAACCTAAAGCTTGCTCTTTTTAACGTGTCATTCAATGGATTATCAGGTGAGGTAC 1498
|||||||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||
Sbjct 1436 TACAGAACCTGAAGCTTGCTCTCTTCAACGTGTCATTCAATAGATTATCAGGTGAGGTAC 1495
Query 1499 CTCACTCTCTGGTCTCCGGGTTACCAGCTTCCTTTCTGCAAGGAAATCCTGAGCTTTGTG 1558
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1496 CTCACTCTCTGGTTTCCGGGTTACCAGCTTCCTTTCTGCAAGGAAATCCCGAGCTTTGTG 1555
Query 1559 GACCCGGTTTACCCAATTCTTGCTCCTCTGATCGGTCTAACTTCCATAAAAAAGGTGGTA 1618
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GACCCGGTTTACCCAATTTTTGCTCCTCTGATCGGTCTAACTTCCATAAAAAAGGTGGTA 1615
Query 1619 AAGCGTTGGTGTTATCTTTGATATGTTTAGCACTTGCTATTGCCACTTTCCTTGCGGTGT 1678
||||||||||| || ||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 1616 AAGCGTTGGTGCTAGCTTTGATATGTTTAGCATTTGCTATTGCCACTTTACTCGCGGTGT 1675
Query 1679 TATATCGTTATTCTCGAAAGAAAGTGCAATTCAAGAGTACTTGGCGCTCGGAGTTTTATT 1738
||||||| |||| ||||||||||| |||||| ||||||||||||||||| ||||||||||
Sbjct 1676 TATATCGGTATTTTCGAAAGAAAGCGCAATTTAAGAGTACTTGGCGCTCAGAGTTTTATT 1735
Query 1739 ATCCCTTCAAGTTAACTGAGCATGAGTTGATGAAAGTGGTGAATGAAAGTTGTCCTTCCG 1798
||||| |||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 1736 ATCCCCTCAAGTTAACCGAGCATGAGTTGATGAAAGTGGTGAATG-AA--TGTCCTTCCG 1792
Query 1799 GAAGTGAAGTATACGTTCTCAGTTTATCTAGTGGGGAGTTATTAGCTGTGAAGAAGCTTG 1858
| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1793 GGAGTGAAGTATACGTTCTCAGTTTATCAAGTGGGGAGTTAATAGCTGTGAAGAAGCTTG 1852
Query 1859 TGAATTCTAAGAATATATCCTCGAAATCTCTGAAAGCTCAAGTGAGAACCATAGCAAAGA 1918
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1853 TGAATTCTAAGAATATATCCTCGAAAGCTCTGAAAGCTCAAGTGAGAAGCATAGCAAAGA 1912
Query 1919 TACGGCATAAGAACATTACTCGAATTCTTGGGTTTTGCTTCAAAGACGAGA-TGATCTTC 1977
||||||||||||||||||||||||||||||||||||| |||| || || | ||||||||
Sbjct 1913 TACGGCATAAGAACATTACTCGAATTCTTGGGTTTTGTTTCACTGATGA-ATTGATCTTC 1971
Query 1978 TTGATCTATGAATTCACACAAAATGGTAGCTTACATGATATGCTATCGAGAGCTGGCGAC 2037
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1972 TTGATCTATGAGTTCACACAAAATGGTAGCTTACATGATATACTATCGAGACCTGGCGAC 2031
Query 2038 CAACTGCCGTGGAGTATTAGGTTGAAGATAGCACTAGGTGTTGCTCAAGCATTGGCTTAC 2097
||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 2032 CAACTTCCGTGGAGCATTAGATTGAAGATAGCGCTAGGTGTTGCTCAAGCATTGGCATAC 2091
Query 2098 ATTAGCAAAGACTATGTGCCACACTTACTCCATAGGAACCTAAAATCAGCAAACATTTTC 2157
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 2092 ATTAGCAAAGATTATGTGCCACACTTACTCCATAGGAACCTAAAGTCAGCAAACATTCTC 2151
Query 2158 TTGGACAAAGATTTCGAACCCAAGCTCTCTGATTTTGCTCTTGACCATATCGTTGGAGAA 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 TTGGACAAAGATTTCGAACCCAAGCTCTCTGATTTTGCTCTTGACCATATCGTTGGAGAA 2211
Query 2218 ACTGCTTTTCAGTCTCTGGTACATGCAAACACCAACTCCTGCTATACTGCACCAGAAAAC 2277
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2212 ACTGCTTTTCAGTCTCTGGTACATGCAAACTCCAACTCCTGCTATACTGCACCAGAAAAC 2271
Query 2278 CATTACAGCAAGAAAGCAACAGAAGATATGGATGTTTACA 2317
|||||||||||||||||||||||||||||||||||||||
Sbjct 2272 AATTACAGCAAGAAAGCAACAGAAGATATGGATGTTTACA 2311
Score = 361 bits (195), Expect = 2e-98
Identities = 222/235 (94%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 2371 GAAGAAGGCTCTTCTGGGGAGTCCCTTGACATAGTGAAGCAGGTCAGGAGGAAGATAAAC 2430
||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2320 GAAGAAGGCGCATCTAGGGAGTCCCTTGACATAGTGAAGCAGGTCAGGAGGAAGATAAAC 2379
Query 2431 CTGACAGATGGAGCTGCACAAGTTCTTGACCAAAAGATCTTGTCCGATTCTTGCCAATCA 2490
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2380 CTGACAGATGGAGCTGGGCAAGTTCTTGACCAAAAGATCTTGTCCGATTCTTGCCAATCA 2439
Query 2491 GACATGCGAAAGACCTTAGACATTGCTCTAGATTGCACCGCCGTTGCTGCAGAGAAACGA 2550
|| |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2440 GAGATGCTAAAGACCTTAGATATTGCTCTAGATTGTACCGCCGTTGCTGCAGAGAAACGA 2499
Query 2551 CCTTCACTGGTTAAAGTTATTAAA-CTGCTTGAGGGTATTAGTTCTTCTGTCTCA 2604
|||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2500 CCTTCATTGGTTCAAGTTATTAAAGC-GCTTGAGGGTATTAGTTCTTCTGTCTCA 2553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98768005285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5