BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06960.1
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487514 jgi|Araly1|487514|fgenesh2_kg.6__648__AT5G06960.1 1725 0.0
Ahg478587 jgi|Araly1|478587|fgenesh2_kg.3__1288__AT3G12250.4 850 0.0
> Ahg487514 jgi|Araly1|487514|fgenesh2_kg.6__648__AT5G06960.1
Length=1463
Score = 1725 bits (934), Expect = 0.0
Identities = 1009/1046 (96%), Gaps = 1/1046 (0%)
Strand=Plus/Plus
Query 297 ATCGGTTTTTATCTGATGATTTAGTAACAGAGATTTTGAAGAAAAAGAAAAATGGGAGAT 356
|||||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||||
Sbjct 253 ATCGGTTTTTGTCTGATGATTTAGTAACTGAGATTTGGAAG-AAAAGAAAAATGGGAGAT 311
Query 357 ACTAGTCCAAGAACATCAGTCTCAACAGATGGAGACACTGATCATAATAACCTAATGTTC 416
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 312 ACTAGTCCAAGAACATCAGTCTCAACAGATGGAGAGACAGATCATAATAACCTAATGTTC 371
Query 417 GATGAAGGGCATTTGGGTATCGGTGCTTCTGATTCTAGTGACCGTTCAAAGAGTAAAATG 476
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 372 GATGAAGGGCATTTGGGTATTGGTGCTTCTGATTCTAGTGACCGTTCAAAGAGTAAAATG 431
Query 477 GATCAAAAGACGCTTCGTAGGCTCGCTCAAAACCGTGAGGCTGCAAGGAAAAGCAGATTG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 GATCAAAAGACGCTTCGTAGGCTCGCTCAAAACCGTGAGGCTGCAAGGAAAAGCAGATTG 491
Query 537 AGGAAGAAAGCATATGTTCAGCAGCTAGAGAACAGTCGATTGAAGCTAACACAACTTGAG 596
|||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 492 AGGAAGAAAGCATATGTTCAGCAGCTAGAGAATAGCCGATTGAAGTTAACACAACTTGAG 551
Query 597 CAGGAGCTACAAAGAGCACGGCAACAGGGTGTCTTTATCTCAAGCTCTGGAGACCAAGCC 656
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CAGGAGCTGCAAAGAGCAAGGCAACAGGGTGTCTTTATCTCAAGCTCTGGAGACCAAGCC 611
Query 657 CATTCTACCGCTGGAGATGGGGCAATGGCATTTGATGTAGAATACAGACGATGGCAGGAA 716
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 612 CATTCTACCACTGGAGATGGGGCAATGGCATTTGATGCAGAATACAGACGATGGCAGGAA 671
Query 717 GATAAAAACAGACAGATGAAGGAGCTGAGTTCTGCTATAGATTCTCACGCGACTGATTCT 776
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 672 GATAAAAACAGACAGATGAAGGAGCTGAGTTCTGCTTTAGATTCTCACGCGACTGATTCT 731
Query 777 GAGCTTCGGATAATTGTAGATGGAGTAATAGCTCACTATGAGGAGCTTTACAGGATAAAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GAGCTTCGGATAATTGTAGATGGAGTAATAGCTCACTATGAGGAGCTTTACAGGATAAAA 791
Query 837 GGCAACGCAGCTAAGAGTGATGTCTTCCATTTATTATCAGGGATGTGGAAAACCCCAGCT 896
|||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 792 GGCAACGCAGCTAAGAATGATGTCTTCCATTTATTATCGGGGATGTGGAAAACACCAGCT 851
Query 897 GAGAGATGTTTCTTGTGGCTCGGCGGTTTCCGTTCATCAGAACTTCTCAAGCTTATAGCG 956
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 852 GAGAGATGTTTCTTGTGGCTCGGTGGTTTCCGTTCATCAGAACTTCTCAAGCTTATAGCG 911
Query 957 AGTCAGTTGGAGCCCTTGACAGAACAACAATCGCTAGACATAAATAACTTGCAACAGTCT 1016
| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 912 AATCAGTTGGAGCCGTTGACAGAACAACAATCACTAGACATAAATAACTTGCAACAGTCT 971
Query 1017 TCTCAGCAAGCAGAAGATGCTTTGTCTCAAGGGATGGACAACTTACAGCAATCACTCGCT 1076
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 972 TCTCAACAAGCAGAAGATGCTTTGTCTCAAGGGATGGATAACTTACAGCAATCACTCGCT 1031
Query 1077 GATACTTTATCGAGTGGGACTCTCGGTTCAAGTTCATCAGGGAATGTAGCTAGCTACATG 1136
|||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1032 GATACTTTATCGAGCGGGACTCTCGGTTCGAGTTCATCAGGGAATGTAGCTGGCTACATG 1091
Query 1137 GGTCAGATGGCCATGGCGATGGGGAAGTTAGGTACCCTTGAAGGATTTATCCGCCAGGCT 1196
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1092 GGTCAGATGGCCATGGCTATGGGGAAGTTAGGTACTCTTGAAGGATTTATCCGCCAGGCT 1151
Query 1197 GATAACTTAAGGCTACAAACATATCAACAGATGGTGAGACTATTAACAACCCGACAATCG 1256
||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 1152 GATAACTTAAGGCTACAAACATATCAACAAATGGTAAGAATATTAACAACCCGACAATCG 1211
Query 1257 GCTCGTGCTCTCCTTGCAGTACACAATTATACATTGCGGTTACGTGCTCTTAGCTCTCTA 1316
|| ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1212 GCGCGTGCTCTCCTAGCAGTACACAATTATTCATTGCGGTTACACGCTCTTAGCTCTCTA 1271
Query 1317 TGGCTTGCCAGACCAAGAGAGTGAAC 1342
||||||||||||||||||||||||||
Sbjct 1272 TGGCTTGCCAGACCAAGAGAGTGAAC 1297
Score = 231 bits (125), Expect = 9e-60
Identities = 152/164 (93%), Gaps = 6/164 (4%)
Strand=Plus/Plus
Query 9 TTCGTCTTCCATTCCTGttttttttCAGAGACCGGCAAAATaaaa-aaaaaGAAGATCGT 67
||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||
Sbjct 1 TTCGTCTTCCATTCCTGTTTTGTTTCAGAGACCGGGAAAATAAAATAAAAAGAAGATCGT 60
Query 68 AC-AACTAAAAATACCTCAAAGAAGGAAGATACAAAAGTAGTAACCTTTGTTGGTGATTG 126
|| |||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 61 ACAAACT-AAAATACCTCAAAGAAGGTAGAGACAAAAGTAGTAACCTTTGTTGTTGATTG 119
Query 127 ATACT-ATATCTGTTGTGGGTTTTAGACAAAGACCACGTCTTTG 169
||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 120 ATATTCATATCTG--GTGGGTTTTAGACAAAGACCACGTCTTTG 161
> Ahg478587 jgi|Araly1|478587|fgenesh2_kg.3__1288__AT3G12250.4
Length=1047
Score = 850 bits (460), Expect = 0.0
Identities = 765/912 (84%), Gaps = 22/912 (2%)
Strand=Plus/Plus
Query 440 TGCTTCTGATTCTAGTGACCGTTCAAA-GAGTAAAATGGATCAAAAGACGCTTCGTAGGC 498
||| |||||||| ||||| || ||||| || ||| |||||||||||||| ||||||||||
Sbjct 147 TGCATCTGATTCCAGTGATCGATCAAAGGA-TAAGATGGATCAAAAGACCCTTCGTAGGC 205
Query 499 TCGCTCAAAACCGTGAGGCTGCAAGGAAAAGCAGATTGAGGAAGAAAGCATATGTTCAGC 558
| |||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 206 TTGCTCAAAATCGTGAGGCAGCAAGAAAAAGCAGATTGAGGAAGAAAGCGTATGTTCAGC 265
Query 559 AGCTAGAGAACAGTCGATTGAAGCTAACACAACTTGAGCAGGAGCTACAAAGAGCACGGC 618
|||| || || |||||||| ||||| || ||||||||||||||||| ||||||||| | |
Sbjct 266 AGCTGGAAAATAGTCGATTAAAGCTGACTCAACTTGAGCAGGAGCTGCAAAGAGCAAGAC 325
Query 619 AACAGGGTGTCTTT-ATCTCAAGCTCTGGAGACCAAGCCCATTCTACCGCTGGAGATGGG 677
| ||||| || ||| |||||||| || ||||||||||| |||||||| | |||| |||||
Sbjct 326 AGCAGGGCGT-TTTCATCTCAAGTTCAGGAGACCAAGCTCATTCTACTGGTGGAAATGGG 384
Query 678 GCAATGGCATTTGATGTAGAATACAGACGATGGCAGGAAGATAAA-AACAGACAGATGAA 736
|| |||||||||||| |||| | |||||||| ||||| ||| ||||| || |||||
Sbjct 385 GCTTTGGCATTTGATGCAGAACATTCACGATGGCTTGAAGA-AAAGAACAGGCAAATGAA 443
Query 737 GGAGCTGAGTTCTGCTATAG-ATTCTCACGCGA-CTGATTCTGAGCTTCGGATAATTGTA 794
|||||||| ||||| | | || |||| || | |||| ||||||| || ||||||||
Sbjct 444 CGAGCTGAGATCTGCCCT-GAATGCTCATGC-AGGTGATACTGAGCTCCGAATAATTGTG 501
Query 795 GATGGAGTAATAGCTCACTATGAGGAGCTTTACAGGA-TAAAAGGCAACGCAGCTAAGAG 853
|||||||| || ||||||||||||||||||| ||||| ||| | |||| ||||||||||
Sbjct 502 GATGGAGTGATGGCTCACTATGAGGAGCTTTTCAGGATTAAGA-GCAATGCAGCTAAGAA 560
Query 854 TGATGTCTTCCATTTATTATCAGGGATGTGGAAAACCCCAGCTGAGAGATGTTTCTTGTG 913
|||||||||||| || ||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 561 TGATGTCTTCCACTTGTTATCTGGAATGTGGAAAACTCCAGCTGAGAGATGTTTCTTGTG 620
Query 914 GCTCGGCGGTTTCCGTTCATCAGAACTTCTCAAGCTTATAGCGAGTCAGTTGGAGCCCTT 973
||| ||||| ||||| ||||| ||||||||||||||| | |||| |||| | |||||| |
Sbjct 621 GCTTGGCGGGTTCCGCTCATCCGAACTTCTCAAGCTTCTTGCGAATCAGCTAGAGCCCAT 680
Query 974 GACAGAACAACA-ATCGCTAGACATAAATAACTTGCAACAGTCTTCTCAGCAAGCAGAAG 1032
|||||||| ||| | | | | |||||| |||||| ||| | || ||||| || ||||
Sbjct 681 GACAGAACGACAGGT-AATGGGCCTAAATAGCTTGCAGCAGACGTCCCAGCAGGCGGAAG 739
Query 1033 ATGCTTTGTCTCAAGGGATGGACAACTTACAGCAATCACTCGCTGATACTTTATCGAGTG 1092
||||||| ||||| |||||||| | ||||| ||||| || |||||||||||||| ||||
Sbjct 740 ATGCTTTATCTCAGGGGATGGAGAGTTTACAACAATCCCTAGCTGATACTTTATCCAGTG 799
Query 1093 GGACTCTCGGTTCAAGTTCATCAGGGAATGTAGCTAGCTACATGGGTCAGATGGCCATGG 1152
| ||||| ||||| |||||||| | ||||| || |||||||||||||||||||||||||
Sbjct 800 GAACTCTTGGTTCCAGTTCATCTGATAATGTCGCGAGCTACATGGGTCAGATGGCCATGG 859
Query 1153 CGATGGGGAAGTTAGGTACCCTTGAAGGATTTATCCGCCAGGCTGATAACTTAAGGCTAC 1212
|||||||| ||||||| ||| | |||||||| || || |||||||||||||||||||| |
Sbjct 860 CGATGGGGCAGTTAGGCACCGTCGAAGGATTCATACGGCAGGCTGATAACTTAAGGCTGC 919
Query 1213 AAACA-TATCAACAGATGGTGAGACTATTAACAACCCGACAATCGGCTCGTGCTCTCCTT 1271
||||| | |||||||||| | ||| |||||||||| || || || ||||||||||| |||
Sbjct 920 AAACACT-TCAACAGATGCTTAGAGTATTAACAACACGTCAGTCAGCTCGTGCTCTTCTT 978
Query 1272 GC-AGTACACAATTATACAT-TGCGGTTACGTGCTCTTAGCTCTCTA-TGGCTTGCCAGA 1328
|| | ||||| ||||| ||| | || |||||||||||||| || || ||||||||| |
Sbjct 979 GCTA-TACACGATTATTCATCT-CGATTACGTGCTCTTAGTTC-CTTGTGGCTTGCCCGG 1035
Query 1329 CCAAGAGAGTGA 1340
||||||||||||
Sbjct 1036 CCAAGAGAGTGA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59420782200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5