BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06990.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487519 jgi|Araly1|487519|fgenesh2_kg.6__653__AT5G06990.1 1280 0.0
> Ahg487519 jgi|Araly1|487519|fgenesh2_kg.6__653__AT5G06990.1
Length=889
Score = 1280 bits (693), Expect = 0.0
Identities = 849/919 (92%), Gaps = 32/919 (3%)
Strand=Plus/Plus
Query 89 ttttttGTAATGGCAACACCACCGTTAACGCCAAGAATGATGACTCCAACAACAATGTCG 148
|||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||
Sbjct 1 TTTTTTGTAATGGCAACACCACCGTTAACGCCTAGAATGCTGACTCCGACGACAATGTCG 60
Query 149 CCTCTCGGGAGTCCAAAGTCGAAGAAGTCAACGGCGACGGTACGACCGGAGATCACGTTG 208
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 61 CCTCTCGGGAGTCCAAAGTCGAAGAAATCAACGGCGACGGTACGTCCGGAGATCACGTTG 120
Query 209 GAGCAACCATCTGGAAGAAACAAAACAACCGGCTCCAAATCGACGAAACTCTTCCGACGT 268
|||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 121 GAGCAACCGTCTGGAAGAAACAAAACAGCCGGCTCCAAATCGACTAAACTCTTCCGACGC 180
Query 269 GTTAGGTCTGTGTTCAGATCACTTCCGATCATGTCTCCGATGTGTAAATTTCCCGTAGGA 328
|| ||||||||||| |||| || |||||||||||||||||||||||||| ||||| |
Sbjct 181 GTCCGGTCTGTGTTCCGATCTCTACCGATCATGTCTCCGATGTGTAAATTCCCCGT---A 237
Query 329 GGAGGAGGAAGACTCCACGAGAATCACGTTCATGGAGGAACACGTGTCACGGGAACGTTG 388
||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||| ||
Sbjct 238 GGAGGAGGACGACTCCACGAAAATCACGTTCACGGAGGGACACGTGTCACGGGAACGCTG 297
Query 389 TTTGGTTACCGCAAAACGCGTGTGAATCTAGCGGTTCAAGAGAATCCGCGTTCTTTACCG 448
||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 298 TTTGGTTACCGCAAAACACGTGTGAATTTAGCGGTTCAAGAAAATCCGCGTTCTTTACCG 357
Query 449 ATTCTTTTATTGGAGTTAGCGATTCCAACGGGGAAA-CTTCTTCAAGATCTTGGAGTCGG 507
||||| ||| ||||| |||||||||| || |||||| |||||||||||||||||||||||
Sbjct 358 ATTCTGTTACTGGAGCTAGCGATTCCCAC-GGGAAAGCTTCTTCAAGATCTTGGAGTCGG 416
Query 508 TTTAGTGAGAATCGCGTTGGAATGCGAGAAGAAACCGAGCGAGAAAACCAAAATCATTGA 567
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTTAGTGAGAATCGCATTGGAATGCGAGAAGAAACCGAGCGAGAAAACCAAAATCATTGA 476
Query 568 CGAACCGATTTGGGCGTTGTATTGTAACGGTAAGAAATCTGGTTATGGTGTGAAGAGACA 627
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CGAACCGATTTGGGCATTGTATTGTAACGGTAAGAAATCTGGTTATGGTGTGAAGAGACA 536
Query 628 ACCAACGGAAGAGGATCTTGTGGTGATGCAGATGCTTCATGCTGTGTCGATGGGAGCTGG 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACCAACGGAAGAGGATCTTGTGGTGATGCAGATGCTTCATGCTGTGTCGATGGGAGCTGG 596
Query 688 TGTTTTACCGGTGAGCAGTGGCGCGATCACGGAGCAAAGCGGCGGAGGAGGAGGAGGACA 747
||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 597 TGTGTTACCGGTGAGCAGTGGTGCGA-C--GGAGCAAAGCGGCGGAGGAGGAGGAGGACA 653
Query 748 ACAAGAAGGAGATTTGACGTATATGAGAGCACATTTCGAGAGAGTGATTGGGTCAAGAGA 807
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 654 ACAAGAAGGAGATTTGACGTACATGAGAGCACATTTCGAGAGAGTGATTGGGTCAAGAGA 713
Query 808 CTCCGAGACGTATTACATGATGAATCCTGATGGGAACAGTGGACCTGAGCTTAGTATCTT 867
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 714 CTCGGAGACGTATTACATGATGAATCCTGATGGGAACAGTGGACCTGAACTTAGTATCTT 773
Query 868 TTTCGTGAGGGTTTAATAAAACGACGTCACTTTAGGGGAAACATAAAAACTTCatttttc 927
||| || |||||||||||||||||||||||||||||||||||| || | |
Sbjct 774 TTTTGTTCGGGTTTAATAAAACGACGTCACTTTAGGGGAAACAT------TT--T----C 821
Query 928 tctatttatttttcctgttgattttgtttcttttggtattcttcttttc-taatttggta 986
| | ||| |||||||||||||||| ||| ||||||||| ||||| ||||||||||
Sbjct 822 T-T-TTT------CCTGTTGATTTTGTTT-TTT-GGTATTCTT-TTTTCCTAATTTGGTA 870
Query 987 aattattcGAAATGATTTG 1005
|||||||||||||||||||
Sbjct 871 AATTATTCGAAATGATTTG 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5