BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07020.1
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487522 jgi|Araly1|487522|fgenesh2_kg.6__656__AT5G07020.1 1336 0.0
> Ahg487522 jgi|Araly1|487522|fgenesh2_kg.6__656__AT5G07020.1
Length=967
Score = 1336 bits (723), Expect = 0.0
Identities = 883/959 (92%), Gaps = 15/959 (2%)
Strand=Plus/Plus
Query 1 GTTACACGCGTAGGCTAGTGGAAAAGCCCACcacacataacacac-acac-atcttcttc 58
|||||||||||||||||||| |||||||||||||||| | | | | | | |||| ||
Sbjct 1 GTTACACGCGTAGGCTAGTGAAAAAGCCCACCACACACATC-TTCTTC-CGA-CTTCCTC 57
Query 59 ctctc-tttatcttcttcttctctgt-t-tctctAAGAAGATAGAACAATCCCAAGATTC 115
| ||| |||||||||||| || ||| | | |||||||||||||||||| ||||||| ||
Sbjct 58 CCCTCTTTTATCTTCTTCGCCT-TGTCTGT-TCTAAGAAGATAGAACAAACCCAAGAATC 115
Query 116 TCCTCTTATTTGATCAACCATGTCGAATGTCTTGCTATCCCCAAACGGCTACGTATTTGC 175
|| || || |||| |||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct 116 TCGTCGAATCTGATAAACCATGTCGAACGTCTTGCTATCCCCAAACGGCTGCGTTTTTGC 175
Query 176 ATCGCCTAAACCTCTTGGCAGATTCATCAATTCAAAGTCCGGCGGACGGAAACTTTTCTT 235
|||||| |||||||||||||||||| | ||||||||||||||||||||||||||| || |
Sbjct 176 ATCGCCCAAACCTCTTGGCAGATTCCTGAATTCAAAGTCCGGCGGACGGAAACTTGTCGT 235
Query 236 CTCCGTCGTTAGAGCTTCTTCCGATGATGCTGATTGTAATGCCGAAGAATGTGCTCCCGA 295
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTCCGTCGTCAGAGCTTCTTCCGATGATGCTGATTGTAATGCCGAAGAATGTGCTCCCGA 295
Query 296 GAAGGAGGTAGGAACAGTGAGTATGGAATGGTTAGCTGGAGAGAAGACGAAAGTGGTGGG 355
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 296 GAAGGAGGTAGGAACAGTGAGTATGGAATGGTTGGCTGGAGAGAAGACGAAAGTGGTGGG 355
Query 356 AACATTTCCTCCTCGGAAGCCGCGTGGTTGGACTGGCTATGTTGAGAAAGATACTGCTGG 415
||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 356 AACGTTTCCTCCTCGGAGGCCGCGTGGCTGGACTGGCTATGTTGAGAAAGATACTGCCGG 415
Query 416 TCAGACTAATGTTTACTCCATTGAGCCTGCAGTATATGTTGCAGAGAGCGCGATTAGCTC 475
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 416 TCAGACTAATGTTTACTCTATTGAGCCTGCAGTATATGTTGCAGAGAGCGCAATCAGCTC 475
Query 476 AGGTACTGCAGGATCATCGGCTGATGGGGCTGAGAACACAGCAGCAATCGTAGCAGGCAT 535
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGGTACTGCAGGATCATCTTCTGATGGGGCTGAGAACACAGCAGCAATCGTAGCAGGCAT 535
Query 536 TGCTCTTATCGCAGTCGCTGCAGCTTCCTCTATACTCCTCCAAGTCGGGAAAGATGCCCC 595
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 536 TGCCCTTATCGCAGTCGCTGCAGCTTCCTCTATACTCCTCCAAGTTGGGAAAGATGCACC 595
Query 596 AACTCGACCCAAAGCAGTGGATTACAGTGGACCGTCTCTTAGCTACTACATCAACAAGTT 655
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GACTCGACCAAAAGCAGTGGATTACAGTGGACCGTCTCTTAGCTACTACATCAACAAGTT 655
Query 656 CAAGCCTTCTGAAATTGTTCAACCTTCTACCCCCTCCGTCACAGAAGCCCCACCGGTGGC 715
||||||||| |||||||||||| |||||||||||||| |||||||||| || ||| ||||
Sbjct 656 CAAGCCTTCAGAAATTGTTCAAGCTTCTACCCCCTCCATCACAGAAGCTCCGCCGATGGC 715
Query 716 CGAGCTAGAAACTTCACTGCCAGAAACTCCATCGGTGGCTCAGCAAGAAACCTCACTGCC 775
||||| |||||| ||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 716 CGAGCAAGAAACCTCAGTCCCAGAAACTCCACCGGTGGCTCAGCAAGAAACCTCACTGCC 775
Query 776 GGAAACTATGGCTAGTGAGGCTCAGCCAGAGGCGTCTTCTGTTCCAACAACAAGTAGTAC 835
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 776 GGAAACTATGGCCAGTGAGGCTCAGCCAGAGGCGTCCTCTGTTCCAACAACAAGTAGTAC 835
Query 836 CTCTTAGG-GGCTTAGCCTAGGATTATATCTTTGTGTAAAAATGAGATGAAGCATATACC 894
|||||||| || |||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 836 CTCTTAGGAGG-TTAGCCTAGGATTATATCTT-GTGTAAAGATGAGATGAAGCATAGACC 893
Query 895 AAG-ATTATGCATTCTGTTAATATTCGGATATACCTATATGTATGTATACACTCTGTCA 952
| | ||||||||||||||||||||||||||||| ||| | |||||||||||||| |||
Sbjct 894 A-GTATTATGCATTCTGTTAATATTCGGATATATCTACCTATATGTATACACTCTATCA 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37512950328
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5