BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07030.1
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487523 jgi|Araly1|487523|fgenesh2_kg.6__657__AT5G07030.1 2743 0.0
> Ahg487523 jgi|Araly1|487523|fgenesh2_kg.6__657__AT5G07030.1
Length=1766
Score = 2743 bits (1485), Expect = 0.0
Identities = 1681/1774 (95%), Gaps = 20/1774 (1%)
Strand=Plus/Plus
Query 90 GAAACGAGAGCAGTTTAAATTTAAGCTAATCTTTATTTTACCGTGGATTCAAACTTAAAA 149
||||| |||||||||| || |||| ||| |||||||||||||| ||||||||||| ||||
Sbjct 1 GAAACAAGAGCAGTTT-AA-TTAATCTATTCTTTATTTTACCGCGGATTCAAACTCAAAA 58
Query 150 CCTAATAAGCGGAAATAATTATTGATTTGTATCA-TATAGTTAATTATACTTTT-GATTT 207
|||||||||| |||||||| |||||||||||||| | ||||||| |||| |||| |||||
Sbjct 59 CCTAATAAGC-GAAATAATCATTGATTTGTATCATTTTAGTTAAATATA-TTTTGGATTT 116
Query 208 TATGTGCTTGGTCATTATGTAGCTCAGA-C-CACTATATATACCCTTCTCATGCCAACAC 265
|||||||||||||||| ||||||||||| | ||||||| ||| |||||||||||||||||
Sbjct 117 TATGTGCTTGGTCATTTTGTAGCTCAGACCACACTATAAATAACCTTCTCATGCCAACAC 176
Query 266 CATTTAATAACCCATCCAACCCAAAAGCATACAATAC-A-ATGTCTACTCTTGTTTTATT 323
|||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 177 CATTTAAT-ACCCATCCAACCCAAAAGCATACAATACAATATGTCTACTCTTGTTTTATT 235
Query 324 CCTCCAACTTTTTTCCATCCTACCATTAGCACTTGGGTTGAACCACCCAAATTGTGACCT 383
||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||
Sbjct 236 CCTCCAACTTTTTTCCATCGTCCCATTAGCACTTGGGTTAAACCACCCAAACTGTGACCT 295
Query 384 GACCAAGACTCAAGACCAAGGCTCTACCCTAAGAATCTTCCACATAGACAGCCCTTGCTC 443
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 296 CACCAAGACTCAAGACCAAGGCTCTACCTTAAGAATCTTCCACATAGACAGCCCTTGCTC 355
Query 444 CCCCTTCAAATCATCATCCCCACTCTCATGGGAAGCGCGTGTGCTCCAGACGCTGGCTCA 503
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CCCCTTCAAATCATCTTCCCCACTCTCATGGGAAGCGCGTGTGCTCCAGACGCTGGCTCA 415
Query 504 AGACCAGGCCCGTCTCCAGTACCTGAGCAGCCTCGTCGCCGGGAGATCTGTAGTCCCCAT 563
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 416 AGACCAGGCCCGTCTCCAGTACTTGAGCAGCCTTGTCGCCGGGAGATCTGTAGTCCCCAT 475
Query 564 TGCCTCAGGGCGTCAAATGTTGCAAAGCACTACATACATTGTCAAGGCTTTGATCGGTAC 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 476 CGCCTCAGGGCGTCAAATGTTGCAAAGCACTACATACATTGTCAAGGCTTTGATCGGAAC 535
Query 624 TCCGGCTCAGCCGCTGCTCCTAGCCATGGACACGAGCAGTGACGTGGCTTGGATTCCTTG 683
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 536 TCCGGCTCAGCCACTGCTCCTAGCCATGGACACGAGCAGTGACGTGGCTTGGATTCCGTG 595
Query 684 CTCCGGCTGCGTTGGCTGTCCTTCTAACACGGCCTTTTC-CCCTGCTAAGTCTACATCCT 742
|||||||||||||||||||||||||||||| |||||||| ||| || ||||| || ||||
Sbjct 596 CTCCGGCTGCGTTGGCTGTCCTTCTAACACCGCCTTTTCTCCC-GCCAAGTCCACCTCCT 654
Query 743 TCAAGAACGTTAGCTGCAGCGCTCCTCAGTGTAAGCAGGTACCAAACCCCACGTGTGGAG 802
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TCAAGAATGTTAGTTGCAGCGCTCCTCAGTGTAAGCAGGTACCAAACCCCACGTGTGGAG 714
Query 803 CACGCGCGTGCTCTTTCAACCTCACCTATGGAAGCTCCTCCATTGCGGCTAACCTCTCTC 862
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 CACGCGCCTGCTCATTCAACCTCACTTATGGAAGCTCCTCCATTGCGGCTAACCTCTCTC 774
Query 863 AAGACACGATACGTCTTGCCGCCGATCCGATCAAAGCCTTTACATTCGGATGCGTCAACA 922
||||||| || || || |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 775 AAGACACCATCCGCCTCGCCGCCGACCCGATCAAAGCCTTTACCTTCGGATGCGTCAACA 834
Query 923 AAGTCGCCGGTGGAGGAACCATCCCACCACCTCAAGGCTTGTTGGGCTTGGGACGAGGCC 982
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 835 AAGTCGCCGGTGGAGGAACCATCCCACCACCACAAGGCTTGTTGGGCTTGGGACGAGGCC 894
Query 983 CACTTTCACTCATGTCACAGGCTCAGTCTATTTACAAGTCCACTTTCTCTTACTGTTTGC 1042
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 895 CACTTTCCCTCATGTCACAGGCTCAGTCCGTTTACAAGTCCACTTTCTCTTACTGTTTGC 954
Query 1043 CAAGTTTCAGGTCTCTGACCTTCTCTGGTTCTCTCAGACTCGGCCCTACCTCCCAGCCCC 1102
|||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
Sbjct 955 CAAGTTTCAGGTCTCTAACCTTCTCTGGTTCGCTGAGACTCGGCCCTACCTCCCAGCCTC 1014
Query 1103 AGCGCGTGAAGTACACTCAACTTCTCAGAAACCCTAGAAGGTCTTCTCTGTACTACGTCA 1162
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1015 AGCGCGTGAAGTACACTCAACTTCTCAGAAACCCTAGAAGGTCTTCTTTGTATTACGTCA 1074
Query 1163 ACCTCGTTGCGATCCGCGTTGGTCGGAAAGTCGTCGATTTACCGCCGGCAGCTATTGCTT 1222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1075 ACCTCGTTGCGATCCGCGTTGGTCGGAAAGTCGTCGATTTACCGCCGGCAGCTATTGCCT 1134
Query 1223 TTAATCCTTCAACCGGCGCTGGAACCATCTTCGACTCCGGAACTGTGTACACGCGGCTGG 1282
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1135 TTAATCCTTCCACCGGCGCTGGAACCATCTTTGACTCCGGGACTGTGTACACGCGGCTGG 1194
Query 1283 CTAAACCGGTTTACGAGGCAGTGAGGAACGAGTTCAGGAAGCGCGTGAAGCCAACCACAG 1342
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1195 CTAAACCGGTATACGAGGCAGTGAGGAACGAGTTCAGGAAGCGCGTGAAGCCACCCACCG 1254
Query 1343 CCGTGGTGACGTCACTCGGGGGTTTCGACACGTGCTACTCAGGGCAAGTCAAGGTGCCGA 1402
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1255 CCGTGGTGACGTCACTCGGGGGTTTCGACACGTGTTACTCAGGGCAAGTCAAGGTGCCGA 1314
Query 1403 CGATAACATTCATGTTCAAGGGAGTGAACATGACGATGCCGGCTGATAACCTGATGTTAC 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CGATAACATTCATGTTCAAGGGAGTGAACATGACGATGCCGGCTGATAACCTGATGTTAC 1374
Query 1463 ACAGTACCGCCGGAAGCACGTCGTGCCTCGCCATGG-CTGCAGCGCCGGAAAACGTAAAC 1521
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1375 ACAGCACCGCCGGAAGCACGTCGTGCCTCGCCATGGCCT-CAGCGCCGGAAAACGTAAAC 1433
Query 1522 TCTGTCGTCAATGTGATCGCAAGCATGCAGCAGCAGAACCACCGTGTCCTCATCGACGTC 1581
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TCTGTTGTCAATGTGATCGCAAGCATGCAGCAGCAGAACCACCGTGTCCTCATCGACGTT 1493
Query 1582 CCCAATGGACGGCTCGGTTTGGCACGTGAACGATGCTCTTAGAAAGATGAATGAGACAAT 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 CCCAATGGACGGCTCGGTTTGGCACGTGAACGATGCTCTTAGAAAGATGAATGAGACAAT 1553
Query 1642 AAGAGCCTACTCATATTTATGCAGAGACttgtttgtttgtgttatttgtgtgtttcattt 1701
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1554 AAGAGCCTACTCATATTTATGCAGAGACTTGTTTGTTTGTGTTCTTTGTGTGTTTCATTT 1613
Query 1702 ttgtcttgtcttgcgtcgtttgCTTCACCAGTCTTAGAGGGCGGAGGTGTGTAGCATTTG 1761
||||||| ||| | |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1614 TTGTCTTTTCTCGTGTCGTTTGCTTCACCAGTCTTAGAGGGCGGTGGTGTTTAGCATTTG 1673
Query 1762 TGCTATCTAGTAATTT--ATGTTTTTAATTGTTCTTCAATTATCTAGAG-TGTTGGATCT 1818
||||||| ||| |||| |||||||||| ||||||| |||| ||||||| | ||||||||
Sbjct 1674 TGCTATCAAGTCATTTTTATGTTTTTAACTGTTCTTGAATTCTCTAGAGAT-TTGGATCT 1732
Query 1819 AAG-CTAATCAAATAATGAAACTATATTATATTT 1851
|| ||||||||||||||||||||||| ||||||
Sbjct 1733 AAAACTAATCAAATAATGAAACTATATAATATTT 1766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69971780065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5