BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G07040.1

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940152 jgi|Araly1|940152|scaffold_600696.1                        743    0.0  


> Ahg940152 jgi|Araly1|940152|scaffold_600696.1
Length=536

 Score =  743 bits (402),  Expect = 0.0
 Identities = 455/481 (95%), Gaps = 2/481 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTCCTATAAGTCCTCCTGCCAGTGGGGTTGGGCTTGGCTACGGTATAGCCATCGCC  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  28   ATGTCTCCTATAAGTCCTCCGGCCAGTGGGGTTGGGCTTGGCTACGGTATAGCCATCGCC  87

Query  61   GTAAGCATCTTGGTTCTCATATCTTTTATAATGCTGGCCTCATACATCTGCATAAGGTCA  120
            ||||||||| | |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  88   GTAAGCATCCTAGTTCTCATCTCCTTTATAATGCTGGCCTCATACATCTGCATAAGGTCA  147

Query  121  AAATCTACAGGAAGAGACGAAGCCACTAGTGACGTAGTTCTTGACTTGCCGTCTCCCGCG  180
            |||||||||||||||||||||||||| ||||||| |||||||||||  ||||| ||||||
Sbjct  148  AAATCTACAGGAAGAGACGAAGCCACAAGTGACGGAGTTCTTGACTCCCCGTCGCCCGCG  207

Query  181  GCTGAGGTGAAGCTCGGTCTAGACCGGCCAGTGATAGAGTCATATCCAAGGATAGTGTTG  240
            ||||| |||||||||||| | ||||| || ||||||||||||||||||||||||||||||
Sbjct  208  GCTGAAGTGAAGCTCGGTTTGGACCGACCGGTGATAGAGTCATATCCAAGGATAGTGTTG  267

Query  241  GGAGATAGCCGGAGATTACCGAGGCCCAACAACGGCCCATGTTCGATATGTCTATGTGAT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268  GGAGATAGCCGGAGATTACCGAGGCCCAACAACGGCCCATGTTCGATATGTCTATGTGAT  327

Query  301  TACGAGGCTAGGGAACCCGTTCGGTGTATACCGGAATGTAATCACTGCTTCCACACTGAT  360
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  328  TACGAGGCTAGGGAACCGGTTCGGTGTATACCGGAATGTAATCACTGCTTCCACACTGAT  387

Query  361  TGTGTTGATGAGTGGCTCCGGACAAGTGCTACGTGTCCTCTTTGTAGGAACTCACCGGCT  420
            |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct  388  TGTGTTGATGAGTGGCTCCGGACAAGTGCTACATGTCCTCTATGCAGGAACTCACCGGCT  447

Query  421  CCCTCTAGGCTAGCCACACCCTTATCCGACTT-AGTCCCACTCGCCTTTCAAATCAGGTG  479
            || ||||||||||||||||| || ||||| || | ||||||||||||||||||| |||||
Sbjct  448  CCGTCTAGGCTAGCCACACCATTGTCCGATTTGA-TCCCACTCGCCTTTCAAATTAGGTG  506

Query  480  A  480
            |
Sbjct  507  A  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17398948584


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5