BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07050.1
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487525 jgi|Araly1|487525|fgenesh2_kg.6__659__AT5G07050.1 2032 0.0
> Ahg487525 jgi|Araly1|487525|fgenesh2_kg.6__659__AT5G07050.1
Length=1358
Score = 2032 bits (1100), Expect = 0.0
Identities = 1281/1365 (94%), Gaps = 25/1365 (2%)
Strand=Plus/Plus
Query 1 ATGTCGATGGAGGAGATTAGTAGCTGTGAGAGCTTTCTCACAAGCTCTAAACCCTACTTC 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGATGGAGGAGCTTAGTAGCTGTGAGAGCTTTCTCACAAGCTCTAAACCCTACTTC 60
Query 61 GCCATGATATCTCTCCAGTTTGGCTACGCCGGCATGAATATAATTACCAAAATATCCCTC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GCCATGATATCTCTCCAGTTTGGCTACGCCGGCATGAACATAATTACCAAAATATCCCTC 120
Query 121 AACACCGGTATGAGCCACTATGTCCTTGTCGTCTACCGCCATGCAATTGCCACCGCCGTT 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 AACACCGGTATGAGCCACTATGTCCTTGTCGTCTACCGCCATGCAATCGCCACCGCCGTT 180
Query 181 ATTGCACCCTTTGCTTTCTTCTTCGAAAGGAAGGCTCAGCCGAAAATAACGTTCTCCATT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTGCACCCTTTGCTTTCTTCTTCGAAAGGAAGGCTCAGCCGAAAATAACGTTCTCCATT 240
Query 241 TTCATGCAACTATTCATTCTCGGCCTTCTTGGGCCAGTGATCGATCAAAACTTCTACTAC 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TTCATGCAACTATTCATTCTCGGCCTTCTCGGGCCAGTGATCGATCAAAACTTCTACTAC 300
Query 301 ATGGGGCTGAAATATACGTCCCCAACGTTCTCATGCGCCATGAGTAACATGCTTCCGGCC 360
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGGGGCTGAAATATACTTCCCCCACGTTCTCATGCGCCATGAGTAACATGCTTCCGGCC 360
Query 361 ATGACCTTTATCTTGGCTGTACTATTCCGGATGGAGATGTTGGACCTGAAGAAACTGTGG 420
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 ATGACCTTTATCTTGGCCGTACTATTCCGGATGGAGATGTTGGACGTGAAGAAACTGTGG 420
Query 421 TGTCAGGCGAAAATAGCCGGAACGGTAGTGACAGT-GGCGGGAGCGATGCTAATGACAAT 479
|||||||||||||||| ||| ||||| |||||||| ||| ||||||||| | ||||||||
Sbjct 421 TGTCAGGCGAAAATAGGCGGCACGGTGGTGACAGTAGGC-GGAGCGATGGTGATGACAAT 479
Query 480 TTACAAAGGACCCATCGTTGAGCTATTTTGGACCAAATATATGCATATTCAAGACTCTTC 539
|||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 480 TTACAAGGGACCCATCGTTGAGCTGTTTTGGACCAAATATATGCATCTTCAAGACTCGTC 539
Query 540 ACATGCT-A--ATACGACGTCGTCTAAGAACTCATCAAGTGATAAGGAATTCCTCAAAGG 596
||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 ACATGCTAATCATACGACGTCGTCTAAGAACTCATCAAGTGATAAGGAATTTCTCAAAGG 599
Query 597 CTCCATCCTCCTAATCTTTGCAACACTCGCTTGGGCCTCCCTCTTTGTTCTACAGGCAAA 656
|||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 600 CTCCATCCTCCTCATCTTTGCAACACTAGCATGGGCCTCCCTCTTCGTTCTACAGGCAAA 659
Query 657 GATACTAAAGACGTACGCGAAGCATCAGCTTTCTCTAACAACACTAATTTGCTTCATCGG 716
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AATACTAAAGACGTATGCGAAGCATCAGCTTTCTCTAACAACACTAATTTGCTTCATCGG 719
Query 717 AACACTACAAGCAGTTGCTGTGACGTTTGTGATGGAACACAACCCCTCTGCTTGGAGAAT 776
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 720 AACACTACAAGCAGTTGCTGTGACGTTTGTGATGGAACACAATCCCTCTGTTTGGAGAAT 779
Query 777 TGGCTGGGACATGAACCTCCTTGCCGCCGCTTACTCTGGGATTGTGGCATCAAGTATCTC 836
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGTTGGGACATGAATCTCCTTGCCGCCGCTTACTCTGGGATTGTGGCATCAAGTATCTC 839
Query 837 ATACTATGTGCAAGGGATAGTGATGAAGAAAAGAGGACCTGTGTTTGCTACTGCCTTTAG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATACTATGTGCAAGGGATAGTGATGAAGAAAAGAGGACCTGTGTTTGCTACTGCCTTTAG 899
Query 897 TCCTTTGATGATGGTTATTGTTGCTGTCATGGGTTCTTTTGTCTTGGCAGAAAAAATCTT 956
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 TCCTTTGATGATGGTTATTGTTGCTGTCACGGGTTCTTTTGTCTTGGCAGAAAAAATCTT 959
Query 957 CCTTGGAGGGGTGATTGGTGCGGTACTGATTGTAATTGGACTGTATGCTGTCTTATGGGG 1016
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 960 CCTTGGAGGGGTGATTGGTGCAGTACTGATTGTAATTGGACTGTATGCGGTCTTATGGGG 1019
Query 1017 AAAGCAAAAGGAGAATCAAGTGACTATATGTGA--A-CTAGCCAAGATTGACTCAAATAG 1073
|||||||||||||||||||||||| |||||||| | | | |||||||||| ||||||||
Sbjct 1020 AAAGCAAAAGGAGAATCAAGTGACAATATGTGACGAACAATCCAAGATTGAGTCAAATAG 1079
Query 1074 TAAAGTAACTGAAGATGTGGAAGCTAATGGATCTAAAATGAAAATCTCGGAAGGGGATAA 1133
|||||||||| |||||||||||||||||||| | | ||||||||||||||||| |||||
Sbjct 1080 TAAAGTAACTAAAGATGTGGAAGCTAATGGAACCGAGATGAAAATCTCGGAAGGTGATAA 1139
Query 1134 CTCTATGCTCTCTACGATTGTAATCAGCGTACCACTGTCGGAAACACATTTGAAAAAGAC 1193
||||||||| || ||||||||||||||||| ||| | |||||||||| ||||||||||||
Sbjct 1140 CTCTATGCTGTCGACGATTGTAATCAGCGTTCCATTATCGGAAACACCTTTGAAAAAGAC 1199
Query 1194 TATCCAAGAGCCATGAAGATTGTATGGCACTACATATGAAAAATAAAACTAAAGGCTGTT 1253
||||||||||||||||||| |||||| | | | ||| |||| | ||||| ||||
Sbjct 1200 TATCCAAGAGCCATGAAGAAAGTATGGGGG-AGA-A-GAA---TAAAGCGAAAGGTTGTT 1253
Query 1254 TTGGTCGAATCAGT--ATTTTTGTCTTATAATTTTGACCT---C-A-GTAAG-A-GA--A 1302
|||||||||||||| ||||||||||| |||||||||||| | | |||| | || |
Sbjct 1254 TTGGTCGAATCAGTGTATTTTTGTCTTTTAATTTTGACCTTATCTATGTAAATAAGAGTA 1313
Query 1303 AGAGCTCCAACTAttttttttCTTTTGTAAACAAAGAGCTCCAAC 1347
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1314 AGAGCTCCAACTACTTTTTTTCTTTTGTAAACAAAGAGCTCCAAC 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5