BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07050.1 Length=1357 Score E Sequences producing significant alignments: (Bits) Value Ahg487525 jgi|Araly1|487525|fgenesh2_kg.6__659__AT5G07050.1 2032 0.0 > Ahg487525 jgi|Araly1|487525|fgenesh2_kg.6__659__AT5G07050.1 Length=1358 Score = 2032 bits (1100), Expect = 0.0 Identities = 1281/1365 (94%), Gaps = 25/1365 (2%) Strand=Plus/Plus Query 1 ATGTCGATGGAGGAGATTAGTAGCTGTGAGAGCTTTCTCACAAGCTCTAAACCCTACTTC 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCGATGGAGGAGCTTAGTAGCTGTGAGAGCTTTCTCACAAGCTCTAAACCCTACTTC 60 Query 61 GCCATGATATCTCTCCAGTTTGGCTACGCCGGCATGAATATAATTACCAAAATATCCCTC 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 GCCATGATATCTCTCCAGTTTGGCTACGCCGGCATGAACATAATTACCAAAATATCCCTC 120 Query 121 AACACCGGTATGAGCCACTATGTCCTTGTCGTCTACCGCCATGCAATTGCCACCGCCGTT 180 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 121 AACACCGGTATGAGCCACTATGTCCTTGTCGTCTACCGCCATGCAATCGCCACCGCCGTT 180 Query 181 ATTGCACCCTTTGCTTTCTTCTTCGAAAGGAAGGCTCAGCCGAAAATAACGTTCTCCATT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATTGCACCCTTTGCTTTCTTCTTCGAAAGGAAGGCTCAGCCGAAAATAACGTTCTCCATT 240 Query 241 TTCATGCAACTATTCATTCTCGGCCTTCTTGGGCCAGTGATCGATCAAAACTTCTACTAC 300 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 TTCATGCAACTATTCATTCTCGGCCTTCTCGGGCCAGTGATCGATCAAAACTTCTACTAC 300 Query 301 ATGGGGCTGAAATATACGTCCCCAACGTTCTCATGCGCCATGAGTAACATGCTTCCGGCC 360 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 301 ATGGGGCTGAAATATACTTCCCCCACGTTCTCATGCGCCATGAGTAACATGCTTCCGGCC 360 Query 361 ATGACCTTTATCTTGGCTGTACTATTCCGGATGGAGATGTTGGACCTGAAGAAACTGTGG 420 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 361 ATGACCTTTATCTTGGCCGTACTATTCCGGATGGAGATGTTGGACGTGAAGAAACTGTGG 420 Query 421 TGTCAGGCGAAAATAGCCGGAACGGTAGTGACAGT-GGCGGGAGCGATGCTAATGACAAT 479 |||||||||||||||| ||| ||||| |||||||| ||| ||||||||| | |||||||| Sbjct 421 TGTCAGGCGAAAATAGGCGGCACGGTGGTGACAGTAGGC-GGAGCGATGGTGATGACAAT 479 Query 480 TTACAAAGGACCCATCGTTGAGCTATTTTGGACCAAATATATGCATATTCAAGACTCTTC 539 |||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||| || Sbjct 480 TTACAAGGGACCCATCGTTGAGCTGTTTTGGACCAAATATATGCATCTTCAAGACTCGTC 539 Query 540 ACATGCT-A--ATACGACGTCGTCTAAGAACTCATCAAGTGATAAGGAATTCCTCAAAGG 596 ||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 540 ACATGCTAATCATACGACGTCGTCTAAGAACTCATCAAGTGATAAGGAATTTCTCAAAGG 599 Query 597 CTCCATCCTCCTAATCTTTGCAACACTCGCTTGGGCCTCCCTCTTTGTTCTACAGGCAAA 656 |||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct 600 CTCCATCCTCCTCATCTTTGCAACACTAGCATGGGCCTCCCTCTTCGTTCTACAGGCAAA 659 Query 657 GATACTAAAGACGTACGCGAAGCATCAGCTTTCTCTAACAACACTAATTTGCTTCATCGG 716 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AATACTAAAGACGTATGCGAAGCATCAGCTTTCTCTAACAACACTAATTTGCTTCATCGG 719 Query 717 AACACTACAAGCAGTTGCTGTGACGTTTGTGATGGAACACAACCCCTCTGCTTGGAGAAT 776 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 720 AACACTACAAGCAGTTGCTGTGACGTTTGTGATGGAACACAATCCCTCTGTTTGGAGAAT 779 Query 777 TGGCTGGGACATGAACCTCCTTGCCGCCGCTTACTCTGGGATTGTGGCATCAAGTATCTC 836 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TGGTTGGGACATGAATCTCCTTGCCGCCGCTTACTCTGGGATTGTGGCATCAAGTATCTC 839 Query 837 ATACTATGTGCAAGGGATAGTGATGAAGAAAAGAGGACCTGTGTTTGCTACTGCCTTTAG 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 ATACTATGTGCAAGGGATAGTGATGAAGAAAAGAGGACCTGTGTTTGCTACTGCCTTTAG 899 Query 897 TCCTTTGATGATGGTTATTGTTGCTGTCATGGGTTCTTTTGTCTTGGCAGAAAAAATCTT 956 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 900 TCCTTTGATGATGGTTATTGTTGCTGTCACGGGTTCTTTTGTCTTGGCAGAAAAAATCTT 959 Query 957 CCTTGGAGGGGTGATTGGTGCGGTACTGATTGTAATTGGACTGTATGCTGTCTTATGGGG 1016 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 960 CCTTGGAGGGGTGATTGGTGCAGTACTGATTGTAATTGGACTGTATGCGGTCTTATGGGG 1019 Query 1017 AAAGCAAAAGGAGAATCAAGTGACTATATGTGA--A-CTAGCCAAGATTGACTCAAATAG 1073 |||||||||||||||||||||||| |||||||| | | | |||||||||| |||||||| Sbjct 1020 AAAGCAAAAGGAGAATCAAGTGACAATATGTGACGAACAATCCAAGATTGAGTCAAATAG 1079 Query 1074 TAAAGTAACTGAAGATGTGGAAGCTAATGGATCTAAAATGAAAATCTCGGAAGGGGATAA 1133 |||||||||| |||||||||||||||||||| | | ||||||||||||||||| ||||| Sbjct 1080 TAAAGTAACTAAAGATGTGGAAGCTAATGGAACCGAGATGAAAATCTCGGAAGGTGATAA 1139 Query 1134 CTCTATGCTCTCTACGATTGTAATCAGCGTACCACTGTCGGAAACACATTTGAAAAAGAC 1193 ||||||||| || ||||||||||||||||| ||| | |||||||||| |||||||||||| Sbjct 1140 CTCTATGCTGTCGACGATTGTAATCAGCGTTCCATTATCGGAAACACCTTTGAAAAAGAC 1199 Query 1194 TATCCAAGAGCCATGAAGATTGTATGGCACTACATATGAAAAATAAAACTAAAGGCTGTT 1253 ||||||||||||||||||| |||||| | | | ||| |||| | ||||| |||| Sbjct 1200 TATCCAAGAGCCATGAAGAAAGTATGGGGG-AGA-A-GAA---TAAAGCGAAAGGTTGTT 1253 Query 1254 TTGGTCGAATCAGT--ATTTTTGTCTTATAATTTTGACCT---C-A-GTAAG-A-GA--A 1302 |||||||||||||| ||||||||||| |||||||||||| | | |||| | || | Sbjct 1254 TTGGTCGAATCAGTGTATTTTTGTCTTTTAATTTTGACCTTATCTATGTAAATAAGAGTA 1313 Query 1303 AGAGCTCCAACTAttttttttCTTTTGTAAACAAAGAGCTCCAAC 1347 ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1314 AGAGCTCCAACTACTTTTTTTCTTTTGTAAACAAAGAGCTCCAAC 1358 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50779725444 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5