BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07060.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470757 jgi|Araly1|470757|fgenesh2_kg.1__711__AT1G07360.1 819 0.0
Ahg487526 jgi|Araly1|487526|fgenesh2_kg.6__660__AT5G07060.1 619 1e-176
> Ahg470757 jgi|Araly1|470757|fgenesh2_kg.1__711__AT1G07360.1
Length=1556
Score = 819 bits (443), Expect = 0.0
Identities = 666/772 (86%), Gaps = 22/772 (3%)
Strand=Plus/Plus
Query 13 GATCATGGAGCCGATGGATGGGAAAGCGCCGATTTCCCAATCACCTGCGAATCTTGCT-T 71
||||||| ||| |||||||||||| || | ||||||||||||| |||||||||||| | |
Sbjct 87 GATCATGAAGCTGATGGATGGGAACGCTCTGATTTCCCAATCATCTGCGAATCTTG-TCT 145
Query 72 CGGTGACAATCCGTACATGCGAATGACCCGAGCGGATTATGATAAGGAATGCAAGATATG 131
||||||||| || ||| |||||||||| |||| |||||||||||||||||||||| ||
Sbjct 146 CGGTGACAACCCCTACGTGCGAATGACTAAAGCGAATTATGATAAGGAATGCAAGATTTG 205
Query 132 TAGTCGTCCTTTCACAGCT-TTTAGGTGGCGACCAGGCCG-GAATGCTAGATTCAAGAAA 189
|| || |||||||| | | |||||||||||||| ||||| | ||||||||| |||||||
Sbjct 206 TACACGACCTTTCAC-GGTGTTTAGGTGGCGACCTGGCCGCG-ATGCTAGATACAAGAAA 263
Query 190 ACCGAGATTTGTCAAACTTGCT-CTAAGCTAAAAAATGTATGCCAAGTCTGTCTTCTGGA 248
||||| |||||||| ||||| | | ||||| ||||||||||| |||||||||||||||||
Sbjct 264 ACCGAAATTTGTCAGACTTGTTGC-AAGCTCAAAAATGTATGTCAAGTCTGTCTTCTGGA 322
Query 249 TCTCG-GTTTTGGTCTTCCTGTTCAGGTCAGAGACTCAGCACTCAATATTAATTCTCACT 307
||| | | | ||||||||| ||||| ||||||||| |||| ||||| |||| | |||| |
Sbjct 323 TCTTGAG-TATGGTCTTCCAGTTCAAGTCAGAGACACAGCCCTCAACATTAGTACTCA-T 380
Query 308 -ACTCTGTCCC-AATGAGCCATGTCAACAGAGAGTACTTTGCTGACGAGCATGACCCAAA 365
||||| |||| || || |||||||||||||||| |||||||| ||||| ||| |||
Sbjct 381 GACTCTATCCCTAA-AAGTGATGTCAACAGAGAGTATTTTGCTGAAGAGCACGACAGAAA 439
Query 366 GACTAGAGCTGGACTGGATTATGAATCTTCATTTGGGAAGATGCAACCTAATGATACTAT 425
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 440 GACTAGAGCTGGACTGGATTATGAATCTTCATTCGGGAAGATGCGACCTAATGATACTAT 499
Query 426 TTTAAAGCTTCAGAGAAGAACACCTTCCTATGAA-AAGAACCG-GCCAAAAATTTGTAGT 483
|||||||||||| |||| |||||| | |||| || | |||||| | || | ||||||||
Sbjct 500 TTTAAAGCTTCAAAGAACAACACCATACTAT-AAGAGGAACCGAG-CACATGTTTGTAGT 557
Query 484 TTCTACACCATTGGTCAGTGTAAAAGAGGTGCCGAATGTTCATTCCGGCATGAGATGCCC 543
|||| || || ||| |||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct 558 TTCTTCATCAGGGGTGAGTGTACAAGAGGTGCCGAATGTCCATACCGGCATGAGATGCCC 617
Query 544 GAAACAGGAGAGCTATCCCATCAAAACAT-AAGAGATCGTTATTATAGTGTAAATGATCC 602
|||||||||||||||||||| |||||||| || ||| ||||||||| |||| ||||||||
Sbjct 618 GAAACAGGAGAGCTATCCCAGCAAAACATTAA-AGACCGTTATTATGGTGTTAATGATCC 676
Query 603 AGTCGCGATGAAGTTACTCAGAAAAGCTGGTGAGATGGGCACTTTGGAACCACCAGAGGA 662
||| || |||||||| ||| | ||||||||||||||||||||||||||| ||||||| ||
Sbjct 677 AGTTGCTATGAAGTTGCTCGGCAAAGCTGGTGAGATGGGCACTTTGGAATCACCAGATGA 736
Query 663 TGAAAGCATCAAAACACTTTACGTCGGTGGACTTAACTCAAGAATCTTTGAGCAGGACAT 722
||||||||| ||||| ||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 737 TGAAAGCATTAAAACGCTTTACGTCGGTGGACTTAACTCGAGAATCCTCGAGCAGGACAT 796
Query 723 AC-ATGACCACTTCTACGCTTATGGAGAAATGGAATCTATCAGAGTCATGGC 773
| | ||||| ||||| |||||||||||||| ||||| |||||| || ||||
Sbjct 797 AAGA-GACCAGTTCTATGCTTATGGAGAAATCGAATCCATCAGAATCTTGGC 847
> Ahg487526 jgi|Araly1|487526|fgenesh2_kg.6__660__AT5G07060.1
Length=984
Score = 619 bits (335), Expect = 1e-176
Identities = 423/464 (91%), Gaps = 12/464 (3%)
Strand=Plus/Plus
Query 40 GCCGATTTCCCAATCACCTGCGAATCTTGCTTCGGTGACAATCCGTACATGCGAATGACC 99
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 22 GCCGATTTCCCAATCACCTGCGAATCTTGCTTCGGAGACAATCCGTACGTGCGAATGACC 81
Query 100 CGAGCGGATTATGATAAGGAATGCAAGATATGTAGTCGTCCTTTCACAGCTTTTAGGTGG 159
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 82 CGAGCGGATTATGATAAGGAATGCAAGATATGTAGACGCCCTTTCACAGCTTTTAGGTGG 141
Query 160 CGACCAGGCCGGAATGCTAGATTCAAGAAAACCGAGATTTGTCAAACTTGCT-CTAAGCT 218
||||||||||||||||||||||||||||||||||| |||||||| ||||||| | | |||
Sbjct 142 CGACCAGGCCGGAATGCTAGATTCAAGAAAACCGAAATTTGTCAGACTTGCTGC-AGGCT 200
Query 219 AAAAAATGTATGCCAAGTCTGTCTTCTGGATCTCG-GTTTTGGTCTTCCTGTTCAGGTCA 277
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 201 GAAAAATGTATGCCAAGTCTGTCTTCTGGATCTCGAGTTT-GGTCTTCCTGTTCAGGTCA 259
Query 278 GAGACTCAGCACTC-AATATTAAT--T-CTCACTACTCTGTCCCA-ATGAGCCATGTCAA 332
||||| | |||||| || |||||| | |||| |||||| ||||| | ||||||||||||
Sbjct 260 GAGACACCGCACTCCAA-ATTAATAGTACTCATTACTCTATCCCAGA-GAGCCATGTCAA 317
Query 333 CAGAGAGTACTTTGCTGACGAGCATGACCCAAAGACTAGAGCTGGACTGGATTATGAATC 392
|||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct 318 CAGAGAGTACTTTGCTGAAGAGCACGACAGGAAGACTAGAGCTGGACTGGATTATGAATC 377
Query 393 TTCATTTGGGAAGATGCAACCTAATGATACTATTTTAAAGCTTCAGAGAAGAACACCTTC 452
||||||||||||||||| |||||||| |||||||| ||| ||||| |||| |||||| |
Sbjct 378 TTCATTTGGGAAGATGCTACCTAATG-TACTATTTCAAATCTTCAAAGAACAACACCATA 436
Query 453 CTATGAAAAGAACCGGCCAAAAATTTGTAGTTTCTACACCATTG 496
|||||| | |||||||||| | |||||||||||||||||||||
Sbjct 437 CTATGATAGGAACCGGCCACGAGTTTGTAGTTTCTACACCATTG 480
Score = 322 bits (174), Expect = 4e-87
Identities = 264/306 (86%), Gaps = 12/306 (4%)
Strand=Plus/Plus
Query 537 GATGCCCGAAACAGGAGAGCTATCCCATCAAAACATAAGAGATCGTTATTATAGTGTAAA 596
||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||
Sbjct 480 GATGCCCGAAACAGGAGAGCTATCCCAGCAAAACATAAAAGATCGTTATTATGGTGTAAA 539
Query 597 TGATCCAGTCGCGATGAAGTTAC-TCAGAAAAGCTGGTGAGATGGGCACTTTGGAACCAC 655
|||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 540 TGATCCAGTCGCGAAGAAGTTACAT-GGAAAAGCTGGTGAGATGGGCACTTTGGAACCAC 598
Query 656 CAGAGGATGAAAGCATCAAAACACTTTACGTCGGTGGACTTAACTCAAGAATCTTTGAGC 715
|||||||||||||||||||||| ||||| ||| ||||||||||||| || ||| | || |
Sbjct 599 CAGAGGATGAAAGCATCAAAACGCTTTATGTCCGTGGACTTAACTCGAGTATCCTCGAAC 658
Query 716 AGGACATACATGACCA-CTTCTACGCTTATGGAGAAATG-GAATCTAT-CAGAGTCATGG 772
| |||||||||||| | || |||||||||||||| || || ||| | | ||| | ||
Sbjct 659 AAGACATACATGACAAACT-CTACGCTTATGGAGCTATCAGAGTCTTTGCCGAGAAA-GG 716
Query 773 CCGA-G-GATGGC-AAATATGATCAAAGTGGTTCAAACCAACAGCAACAGGGCAGTATCG 829
| | | | | | ||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 717 CT-ATGCG-TCCCCAAACCTGATCAAAGTGGTTCAAACCAACAGCAACAGGGCAGTGTGG 774
Query 830 CTCATA 835
||||||
Sbjct 775 CTCATA 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5