BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07070.1
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940156 jgi|Araly1|940156|scaffold_600700.1 2113 0.0
Ahg495955 jgi|Araly1|495955|fgenesh2_kg.8__1771__AT5G58380.1 826 0.0
> Ahg940156 jgi|Araly1|940156|scaffold_600700.1
Length=1417
Score = 2113 bits (1144), Expect = 0.0
Identities = 1297/1371 (95%), Gaps = 9/1371 (1%)
Strand=Plus/Plus
Query 1 GATGGAGAACAAACCAAGTGTATTAACTGAAAGATATGAAGTTGGGAGGTTATTGGGTCA 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 23 GATGGAGAACAAACCAAGTGTATTAACTAAAAGATATGAAGTTGGGAGGTTATTGGGTCA 82
Query 61 AGGTACTTTTGCTAAAGTGTATTTTGGAAGGAGTAATCATACCAACGAGAGTGTAGCTAT 120
|||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 83 AGGTACTTTTGCTAAAGTTTATTATGGAAGGAGTATTCATACCAACGAGAGTGTAGCTAT 142
Query 121 CAAGATGATTGACAAGGACAAAGTTATGAGAGTCGGGCTTAGCCAGCAAATCAAGCGAGA 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 143 CAAGATGATTGACAAGGACAAAGTTATGAGAGTCGGGCTTAGCGAGCAAATCAAGAGAGA 202
Query 181 GATCTCTGTAATGAGGATCGCTAAACACCCGAATGTCGTTGAGTTATACGAGGTTATGGC 240
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 203 GATCTCTGTGATGAGGATCGCTAAACACCCGAATGTCGTGGAGTTATACGAGGTTATGGC 262
Query 241 TACAAAGTCAAGGATTTACTTTGTTATTGAGTATTGTAAAGGTGGTGAGCTTTTCAACAA 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 263 AACAAAGTCGAGGATTTACTTTGTTATTGAGTATTGTAAAGGTGGTGAGCTTTTCACCAA 322
Query 301 GGTTGCAAAAGGAAAACTTAAAGAAGATGTTGCTTGGAAGTATTTTTATCAGCTTATTAG 360
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 323 GGTTGCAAAAGGGAAACTTAGAGAGGATGTTGCTTGGAAGTATTTTTATCAGCTTATTAG 382
Query 361 TGCGGTTGATTTTTGTCACAGCCGCGGAGTTTATCACCGCGACATTAAGCCGGAAAATCT 420
| ||||||||||||||| || |||||||| |||||||||||||||||||| || |||||
Sbjct 383 CGGGGTTGATTTTTGTCATAGTCGCGGAGTGTATCACCGCGACATTAAGCCAGAGAATCT 442
Query 421 TTTGTTGGATGACAATGATAATCTTAAGGTATCTGATTTTGGTTTAAGTGCGCTTGCTGA 480
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 443 GTTGTTGGATGACAATGATAATCTTAAGATATCTGATTTTGGTTTAAGCGCGCTTGCTGA 502
Query 481 TTGCAAGCGGCAAGATGGTCTTCTACATACAACTTGTGGTACACCTGCTTATGTTGCGCC 540
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 503 TTGCAAGCGTCAAGATGGTCTTTTACATACAACTTGTGGTACACCTGCTTATGTTGCGCC 562
Query 541 CGAGGTTATTAACCGAAAAGGATACGAGGGTACGAAAGCGGATATTTGGTCTTGTGGTGT 600
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 563 CGAGGTTATTAACCGAAAAGGATATGATGGTACGAAAGCGGATATTTGGTCTTGTGGTGT 622
Query 601 TGTTTTGTTTGTTCTTTTGGCTGGTTATCTTCCTTTCCATGACACTAATCTTATGGAGAT 660
||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 623 TGTCTTGTTTGTTCTTTTGGCTGGTTATCTCCCTTTCCATGACTCTAATCTAATGGAGAT 682
Query 661 GTATAGGAAGATAGGTAAAGCAGACTTCAAGTGTCCCAGCTGGTTTGCTCCTGAGGTAAA 720
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 683 GTATAGGAAGATAGGTAAAGCAGAGTTCAAGTGTCCCAGCTGGTTTGCCCCTGAAGTAAA 742
Query 721 GAGACTATTGTGTAAGATGTTGGACCCTAACCATGAGACTAGAATCACTATTGCAAAAAT 780
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 743 GAGACTATTGTGTAAGATGTTTGACCCTAACCATGAGACTAGAATCACTATTGCAAAAAT 802
Query 781 CAAGGAGAGTTCTTGGTTCAGAAAGGGTTTGCATTTGAAGCaaaaaaaGATGGAAAAGAT 840
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 803 CAAGGAGAGTTCTTGGTTCAGAAAAGGTTTGCATTTGAAGCAAAAGAAGATGGAAAAGAT 862
Query 841 GGAGAAACAACAAGTCAGAGAGGCTACTAATCCCATGGAAGCTGGAGGTTCAGGCCAAAA 900
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||
Sbjct 863 GGAGAAACAACAAGTCAGAGAGGCTACTCATCACATGGAAGCTGGAGGTTCAGGTCTAAA 922
Query 901 TGAAAACGGAGAAAACCACGAGCCGCCTCGACTTGCTACCTTGAATGCTTTCGATATCAT 960
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 923 TGAAAACAGAGAAAACCACGAGCCGCCTCGGCTTGCTACCTTGAATGCTTTCGATATTAT 982
Query 961 CGCCTTGTCTACGGGGTTTGGTCTGGCAGGACTTTTTGGGGA-TGTATATGACAAGCGAG 1019
||| ||||||||||| |||||| ||||||||||||| ||||| | |||||||||||||||
Sbjct 983 CGCATTGTCTACGGGTTTTGGTTTGGCAGGACTTTTCGGGGACT-TATATGACAAGCGAG 1041
Query 1020 AATCTAGGTTCGCGTCG-CAAAAACCTGCTTCAGAGATCATTTCTAAGCTAGTAG-AGGT 1077
||||||| ||||| | | |||||||||||||||||||||||||||||||||| || ||||
Sbjct 1042 AATCTAGATTCGCAT-GTCAAAAACCTGCTTCAGAGATCATTTCTAAGCTAG-AGGAGGT 1099
Query 1078 TGCCAAGTGCCTGAAGCTGAAGATAAGAAAGCAAGGCGCAGGCTTGTTCAAACTGGAAAG 1137
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1100 TGCCAAGTACCTGAAGCTGAAGATAAGAAAGCAAGGCGCAGGCGTGTTCAAACTGGAACG 1159
Query 1138 AGTAAAGGAAGG-AAAAAACGGAATTTTGACGATGGATGCAGAGATATTCCAAGTGACGC 1196
| |||||||||| |||||| ||| |||||||||||||||||||||| ||||||||||| |
Sbjct 1160 ATTAAAGGAAGGTAAAAAAGGGA-TTTTGACGATGGATGCAGAGATCTTCCAAGTGACAC 1218
Query 1197 CGACGTTTCACCTGGTGGAAGTGAAGAAATGTAATGGAGATACAATGGAGTATCAGAAGT 1256
| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1219 CAACGTTTCACCTGGTGGAAGTGAAGAAATGTAATGGAGACACAATGGAGTACCAGAAGT 1278
Query 1257 TAGTGGAGGAGGATCTTAGGCCTGCTTTGGCAGATATTGTTTGGGTTTGGCAAGGCGAGA 1316
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1279 TAATGGAGGAGGATCTTAGGCCTGCTCTGGCAGATATTGTTTGGGTTTGGCAAGGAGAGA 1338
Query 1317 AGGAGAAAGAGGAGCAGTTACTGCAGGATGAACAAGGAGAGCAAGAACCAT 1367
|||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1339 AGGAGAAAGACGAGCAGTTACTGCAGGATGAACAAGGAGAGCAAGA-CCAT 1388
> Ahg495955 jgi|Araly1|495955|fgenesh2_kg.8__1771__AT5G58380.1
Length=1900
Score = 826 bits (447), Expect = 0.0
Identities = 714/844 (85%), Gaps = 13/844 (2%)
Strand=Plus/Plus
Query 1 GATGGAGAACAAACCAAGTGTATTAACTGA-AAGATATGAAGTTGGGAGGTTATTGGGTC 59
|||||| || || |||||||| || ||||| || |||||| |||||||||||||||||||
Sbjct 401 GATGGAAAATAAGCCAAGTGTCTTGACTGATAA-ATATGATGTTGGGAGGTTATTGGGTC 459
Query 60 AAGGTACTTTTGCTAAAGTGTATTTTGGAAGGAGTAATCATACCAACGAGAGTGTAGCTA 119
||||||||||||| || ||||||| ||||||||||| || ||| ||| ||||||| ||||
Sbjct 460 AAGGTACTTTTGCCAAGGTGTATTATGGAAGGAGTATTCTTACTAACCAGAGTGTTGCTA 519
Query 120 TCAAGATGATTGACAAGGACAAAG-TTATGAGAGTCGGGCTTAGCCAGCAAATCAAGCGA 178
|||||||||| |||||||| |||| |||||| ||| || |||| | | || |||||| ||
Sbjct 520 TCAAGATGATCGACAAGGA-AAAGGTTATGAAAGTTGGTCTTATCGAACAGATCAAGAGA 578
Query 179 GAGATCTCTGTAATGAGGATCGCTAAACACCCGAATGTCGTTGAGTTATACGAGGTTATG 238
||||||||||| |||||||| |||| |||||| || || || ||| |||| ||||| |||
Sbjct 579 GAGATCTCTGTTATGAGGATTGCTAGACACCCTAACGTTGTGGAGCTATATGAGGTCATG 638
Query 239 GCTACAAAGTCAAGGATTTACTTTGTTATTGAGTATTGTAAAGGTGGTGAGCTTTTCAAC 298
|| ||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 639 GCAACAAAAACAAGGATCTACTTTGTTATGGAGTATTGTAAAGGTGGAGAGCTTTTCAAC 698
Query 299 AAGGTTGCAAAAGGAAAACTTAA-AGAAGATGTTGCTTGGAAGTATTTTTATCAGCTTAT 357
|||||||| ||||| ||| || | ||| |||||||||||||| || ||||||||||||||
Sbjct 699 AAGGTTGCCAAAGGGAAA-TTGAGAGATGATGTTGCTTGGAAATACTTTTATCAGCTTAT 757
Query 358 TAGTGCGGTTGATTTTTGTCACAGCCGCGGAGTT-TATCACCGCGACATTAAGCCGGAAA 416
| || ||||||||||| |||||||| | || | ||||| || ||||||||||| || |
Sbjct 758 CAACGCAGTTGATTTTTGCCACAGCCGAG-AGGTGTATCATCGTGACATTAAGCCAGAGA 816
Query 417 ATCTTTTGTTGGATGACAATGATAATCTTAAGGTATCTGATTTTGGTTTAAGTGCGCTTG 476
| || ||| ||||||| ||||| ||||| |||||||||||||| || |||||||| ||||
Sbjct 817 ACCTATTGCTGGATGATAATGAGAATCTCAAGGTATCTGATTTCGGGTTAAGTGCCCTTG 876
Query 477 CTGATTGCAAGCGGCAAGATGGTCTTCTACATACAACTTGTGGTACACCTGCTTATGTTG 536
|||| |||||||| |||||||| || || || || |||||||| |||||||| |||||||
Sbjct 877 CTGACTGCAAGCGACAAGATGGCCTCCTCCACACTACTTGTGGCACACCTGCATATGTTG 936
Query 537 CGCCCGAGGTTATTAACCGAAAAGGATACGAGGGTACGAAAGCGGATATTTGGTCTTGTG 596
| ||||| || || || |||||||| || || || || ||||| ||||||||||||||||
Sbjct 937 CTCCCGAAGTGATCAATCGAAAAGGCTATGATGGCACTAAAGCAGATATTTGGTCTTGTG 996
Query 597 GTGTTGTTTTGTTTGTTCTTTTGGCTGGTTATCTTCCTTTCCATGACACTAATCTTATGG 656
| || ||||||||||| || ||||| || ||||| |||||||||||| | ||||| ||||
Sbjct 997 GGGTGGTTTTGTTTGTCCTATTGGCAGGCTATCTACCTTTCCATGACTCAAATCTGATGG 1056
Query 657 AGATGTATAGGAAGATAGGTAAAGCAGACTTCAAGTGTC-CCA-GCTGGTTTGCTCCTGA 714
||||||| ||||||||||| |||||||| || ||| | | ||| ||||||||||||| ||
Sbjct 1057 AGATGTACAGGAAGATAGGGAAAGCAGATTTTAAG-G-CACCAAGCTGGTTTGCTCCAGA 1114
Query 715 GGTAAAGAGACTATTGTGTAAGATGTTGGACCCTAACCATGAGACTAGAATCACTATTGC 774
||| ||| || |||||||||||| | |||||||||| ||| ||||||||||| || ||
Sbjct 1115 AGTACGGAGGCTGTTGTGTAAGATGCTAGACCCTAACCCTGAAACTAGAATCACCATCGC 1174
Query 775 AAAAATCAAGGAGAGTTCTTGGTTCAGAAAGGGTTTGCATTTGAAGCaaaaaaaGATGGA 834
|| ||||| ||||||||||||||||||||| ||||| ||| ||||||| |||||||||||
Sbjct 1175 AAGAATCAGGGAGAGTTCTTGGTTCAGAAAAGGTTTACATATGAAGCAGAAAAAGATGGA 1234
Query 835 -AAA 837
|||
Sbjct 1235 GAAA 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63039355475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5