BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07080.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487528 jgi|Araly1|487528|fgenesh2_kg.6__662__AT5G07080.1 2067 0.0
> Ahg487528 jgi|Araly1|487528|fgenesh2_kg.6__662__AT5G07080.1
Length=1369
Score = 2067 bits (1119), Expect = 0.0
Identities = 1284/1365 (94%), Gaps = 5/1365 (0%)
Strand=Plus/Plus
Query 3 ATGTGATATAGAAATCAAGATGGGAAGCCAAGGCATGAGTTCACCGAGTCCCTTGGTGGT 62
|||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1 ATGTGATATAGAAATCGAGATGGGAAGCCAAGGCATAACTTCACCGAGTCCCTTGGTGGT 60
Query 63 GAAGAAATCGCAAGTGGTTATAGTGAAACCCTCAAAGGCTACACCTGATGTCTCTCTTTC 122
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 61 GAAGAAATCGCAAGTGGTTATAGTGAAACCCTCAAAGGCAACCCCTGATGTCTCTCTTTC 120
Query 123 TCTCTCCACACTCGACAACGATCCTTATCTCGAAACCCTCGCCAAAACCATCTATGTCTA 182
|||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TCTCTCGACATTCGACAATGATCCTTACCTCGAAACCCTCGCCAAAACCATCTATGTCTA 180
Query 183 CGCTCCACCATCCCCAAACGACCACGTCCACGATCCAGCTTCCCTTTTTCAGCAAGCTCT 242
|| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CG--CC-CCACCCCCGAACGACCACGTCCACGATCCAGCTTCCCTTTTTCAGCAAGCTCT 237
Query 243 CTCTGACGCCCTTGTCTATTACTACCCTCTCGCTGGAAAACTTCACCGGGGATCACACGA 302
|||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 238 CTCTGATGCTCTTGTCTATTACTACCCTCTCGCTGGAAAACTTCACCGTGGATCCCACGA 297
Query 303 CCATAGACTAGAATTGAGGTGCAGTCCCGCGGAAGGAGTCCCCTTTGTTAGGGCAACCGC 362
||||||| |||| |||||||||||||||||| |||||||||||||||||||||| ||| |
Sbjct 298 CCATAGATTAGAGTTGAGGTGCAGTCCCGCGCAAGGAGTCCCCTTTGTTAGGGCGACCAC 357
Query 363 AGACTGTACTCTCTCTTCCCTCAACTATTTGAAGGACATGGACACTGACTTATACCAACT 422
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 358 GGACTGCACTCTCTCTTCCCTCAACTATTTGAAGGACATGGACGCTGACTTATACCAACT 417
Query 423 CGTACCTTGTGATGTAGCTGCGCCCTCTGGCGATTACAACCCTCTGGCTTTGCAGATCAC 482
||||||||||||||||||| | ||||||| | ||||||||||||||||||||| |||||
Sbjct 418 AGTACCTTGTGATGTAGCTGTGGCCTCTGGTGGTTACAACCCTCTGGCTTTGCAAATCAC 477
Query 483 TTTGTTTGCATGCGGAGGGCTCACTCTTGCTACGGCCCTCTCTCATTCCTTGTGTGATGG 542
| |||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 478 TCTGTTTGCATGTGGAGGTCTCACTCTTGCAACGGCTCTCTCTCATTCCTTGTGTGATGG 537
Query 543 TTTTGGAGCGTCTCAGTTTTTCAAAACCTTAACTGAGCTCGCCGCGGGAAAAACACAACC 602
||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct 538 TTTTGGAGCGTCTCAGTTTTTCAAAGCCTTAACTGAGCTCGCCGCGGGAAATATACAACC 597
Query 603 TAGCATCATCCCCGTCTGGGACAGACATCGTCTCACTTCTAACAACTTTAGCTTAAACGA 662
||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 598 TAGCATCATCCCCGTTTGGGAAAGACATCGTCTCACCTCTAACAACTTTAGCTTAAACGG 657
Query 663 CCAAGTGGAGGAGGGACAAGCTCCCAAGCTAGTTGATTTTGGAGAGGCTTGCTCTTCTGC 722
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 658 GCAAGTGGAGGAGGGACAAGCTCCCAAGCTGGTTGACTTCGGAGAGGCTTGCTCTTCTGT 717
Query 723 GGCAACTTCTCCCTACACACCCAGC-AACGACATGGTATGTGAGATCCTCAACGTGACAT 781
||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 718 GGCAACTTCCCCCTACACACCCA-CTAACGACATGGTATGTGAGATCCTCAACGTGACAT 776
Query 782 CCGAAGATATTACTCAGCTCAAGGAGAAAGTTGCGGGGGTGGTCACGACTCTAGAGATTC 841
|| |||| || ||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 777 CCCAAGAGATCACTCAGCTCAAGGAGAAGGTTGCGGGGGAGGTCACGACTCTAGAGATTC 836
Query 842 TTGCGGCCCACGTCTGGAGAGCAAGGTGCCGGGCCTTGAAGTTAAGTCCAGATGGGACTT 901
|||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 837 TTGCAGCCCACGTCTGGAGAGCAAGGTGCCGAGCCTTGAAGCTAAGTCCAGATGGGACTT 896
Query 902 CTCTTTTCGGAATGGCTGTGGGTATACGCCGCATTGTGGAGCCACCATTACCGGAAGGGT 961
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 897 CTCTTTTCGGAATGGCTGTGGGTATACGCCGCATTGTGGAGCCACCGTTACCGGAAGGCT 956
Query 962 ACTACGGAAACGCATTTGTCAAAGCCAACGTAGCAATGAAGGCTGGAGAGTTAAGCAACT 1021
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 957 ACTACGGGAACGCATTTGTCAAAGCCAACGTAGCAATGAAGGCTGGAGAGTTGAGCAACT 1016
Query 1022 CACCGTTGTCTCACGTTGTTCAGCTCATTAAAGAGGCAAAGAAAGCGGCACAGGAGAAGA 1081
|||||||||||||||||||| ||||||||||||| || ||||||||||| | ||||||||
Sbjct 1017 CACCGTTGTCTCACGTTGTTAAGCTCATTAAAGAAGCTAAGAAAGCGGCGCTGGAGAAGA 1076
Query 1082 GGTACGTGTTGGAGCAGTTAAGAGAGACAGAGAAAACGTTGAAGATGAATGTAGCGTGTG 1141
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1077 GGTACGTGTTGGAGCAGCTAAGAGAGACAGAGAAAACGTTGAAGATGAAGGTAGCGTGTG 1136
Query 1142 AAGGAGGGAAAGGAGCGTTCATGTTGCTTACTGATTGGAGGCAACTTGGATTGCTAGACG 1201
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AAGGAGGGAACGGAGCGTTCATGTTGCTTACTGATTGGAGGCAACTTGGATTGCTAGACG 1196
Query 1202 AAATTGATTTTGGGTATGGAGGATCAGTGAATATTATACCATTGGTGCCCAAGTATCTGC 1261
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct 1197 AAATTGATTTTGGGTATGGAGGATCGGTGAATATTATACCATTGGTTCCCAAGTATTTGC 1256
Query 1262 CGGATATTTGTATTTTCTTGCCGAGGAAGCAAGGTGGTGTTAGAGTGCTAGTCACGCTGC 1321
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1257 CGGATATTTGCATTTTCTTGCCGAGGAAGCACGGTGGTGTTAGAGTGCTAGTCACGCTGC 1316
Query 1322 CCAAATCTGTAATGGTCAACTTCAAGGAACACATAAATCCCCTAA 1366
| ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 1317 CTAAACCTGTAATGGACAACTTCAAGGAACACATGAATCCCCTAA 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5