BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07090.1
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487529 jgi|Araly1|487529|fgenesh2_kg.6__663__AT5G07090.1 1696 0.0
Ahg495959 jgi|Araly1|495959|fgenesh2_kg.8__1775__AT5G58420.1 1051 0.0
Ahg931590 jgi|Araly1|931590|scaffold_304047.1 1042 0.0
> Ahg487529 jgi|Araly1|487529|fgenesh2_kg.6__663__AT5G07090.1
Length=1097
Score = 1696 bits (918), Expect = 0.0
Identities = 1041/1098 (95%), Gaps = 17/1098 (2%)
Strand=Plus/Plus
Query 1 AGCCTCAGTGGAAACAGAGCAGCTGCAAACATGGCAAGAGGATTGAAGAAGCATCTAAAG 60
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGCCGCAGTGGAATCAGAGCAGCTGCAAACATGGCAAGAGGATTGAAGAAGCATCTAAAG 60
Query 61 AGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTTGGTGGTGCCTTCGCTCCCAAA 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGATCAATGCTCCTAAGCATTGGATGCTTGACAAACTTGGTGGTGCCTTCGCTCCCAAA 120
Query 121 CCATCTTCTGGACCTCACAAGTCGAGGGAGTGTCTTCCTCTTGTCCTGATCATCAGGAAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCATCTTCTGGACCTCACAAGTCGAGGGAGTGTCTTCCTCTTGTCCTGATCATCAGGAAC 180
Query 181 AGGTTGAAGTATGCTTTGACTTACCGTGAAGTTATCTCTATCTTGATGCAAAGGCATATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGTTGAAGTATGCTTTGACTTACCGTGAAGTTATCTCTATCTTGATGCAAAGGCATATC 240
Query 241 CAAGTTGATGGCAAAGTCAGGACTGACAAGACTTACCCTGCTGG-TTTCATGGATGTTGT 299
||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 241 CAAGTTGATGGCAAAGTTAGGACTGACAAGACTTACCCTGCTGGCTTT-ATGGATGTTGT 299
Query 300 ATCCATCCCCAAGACCAATGAGAACTTCCGTCTTCTCTACGACACCAAGGGACGTTTCCG 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 ATCCATCCCCAAGACCAATGAGAACTTCCGTCTTCTCTACGACACCAAAGGACGTTTCCG 359
Query 360 TCTCCACTCCATCAAGGATGAGGAAGCAAAGTTCAAGCTTTGCAAGGTTAGATCTATCCA 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 TCTCCACTCCATCAAGGATGAGGAATCAAAGTTCAAGCTTTGCAAGGTTAGATCTATCCA 419
Query 420 GTTTGGTCAGAAGGGAATTCCATACCTGAACACTTATGATGGTCGCACCATCCGTTACCC 479
||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 420 GTTTGGTCAGAAGGGAATTCCTTTCTTGAACACTTATGATGGTCGCACCATCCGTTACCC 479
Query 480 TGACCCGCTCATCAAGCCAAATGACACCATCAAGCTGGACCTTGAGGAGAACAAGATTGT 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGACCCGCTCATCAAGCCAAACGACACCATCAAGCTGGACCTTGAGGAGAACAAGATTGT 539
Query 540 TGAGTTCATCAAGTTTGACGTGGGTAACGTTGTGATGGTGACTGGAGGCAGAAACAGAGG 599
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 540 TGAGTTCATCAAGTTTGACGTGGGTAATGTTGTGATGGTTACTGGAGGCAGAAACAGAGG 599
Query 600 GCGTGTGGGTGTGATTAAGAACCGTGAAAAGCATAAGGGAAGCTTTGAGACAATCCACAT 659
|||||| || ||||| |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 600 GCGTGTTGGCGTGATCAAGAACCGGGAAAAGCATAAGGGAAGCTTTGAGACGATACACAT 659
Query 660 TCAAGACTCAACAGGGCATGAGTTTGCCACAAGGTTGGGGAATGTGTACACAATCGGCAA 719
||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 660 TCAAGACTCAACAGGACATGAGTTTGCCACAAGGTTGGGCAATGTGTTCACCATCGGCAA 719
Query 720 AGGAACAAAGCCATGGGTGTCTCTTCCAAAGGGCAAAGGTATTAAGCTGACCATCATTGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGGAACAAAGCCATGGGTGTCTCTTCCAAAGGGCAAAGGTATTAAGCTGACCATCATTGA 779
Query 780 GGAAGCCAGGAAGAGACTTGCTTCCCAGCAAGCTGCTTGAAAGTCCAACTGCTTTGAATC 839
|||||| ||||||||||||||||| || |||||||||| ||| |||||||||||||||||
Sbjct 780 GGAAGCTAGGAAGAGACTTGCTTCACAACAAGCTGCTTAAAACTCCAACTGCTTTGAATC 839
Query 840 ATCAAGACC----CG-TTT--CTTT-T-ACAGACTCGCTGCTTGTCTCAGTTTGTGAGTC 890
||||||||| || ||| || | | | ||||||||||||| |||||||||||||| |
Sbjct 840 ATCAAGACCATTTCGATTTTACTCTGTCATAGACTCGCTGCTTATCTCAGTTTGTGAGCC 899
Query 891 TATTTCTTTTCTTATGTTGTTGGATTTCAAAACCCATCAAAAAA-TAGCTGAGTAGTGCT 949
||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||
Sbjct 900 TATTTCTTTTCCTATGTTGTTGGCTTCCAAAACCCATCAAAAAAATAGCTGAGTAGAGCG 959
Query 950 TTTTGTAATGTTTGTATGGTGGATTTTTT-GGTGATTTACCGTTTAAATCAGATGACAGT 1008
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 960 TTTTGTAATGTTTGTATGGTGGATTTTTTTGGTGATTTACCGTTTAAATCAGATGACAGT 1019
Query 1009 TG----GTCCACTCCTTTGCTTAGTCTTCTCCTTTGCTTTGCGCTATTAGTTGTTGAGAG 1064
| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1020 TTCTTAGTCCACTCCTTTGCTTAGTCTCCTCCTTTGCTTTGCGCTTTTAGTTGTTGAGAG 1079
Query 1065 ATGAGTAATAGATATTAT 1082
||||| ||||||||||||
Sbjct 1080 ATGAGAAATAGATATTAT 1097
> Ahg495959 jgi|Araly1|495959|fgenesh2_kg.8__1775__AT5G58420.1
Length=1014
Score = 1051 bits (569), Expect = 0.0
Identities = 719/793 (91%), Gaps = 4/793 (1%)
Strand=Plus/Plus
Query 27 AAACATGGCAAGAGGATTGAAGAAGCATCTAAAGAGGCTCAATGCTCCTAAGCATTGGAT 86
||||||||| || || |||||||||||| | |||||| | ||||| || |||||||||||
Sbjct 39 AAACATGGCGAGGGGTTTGAAGAAGCATTTGAAGAGGATTAATGCGCCGAAGCATTGGAT 98
Query 87 GCTTGACAAACTTGGTGGTGCCTTCGCTCCCAAA-CCATCTTCTGGACCTCACAAGTCGA 145
||||||||||||||||||||| || || |||||| || ||||||||||| || |||||||
Sbjct 99 GCTTGACAAACTTGGTGGTGCATTTGC-CCCAAAGCCGTCTTCTGGACCACATAAGTCGA 157
Query 146 GGGAGTGTCTTCCTCTTGTCCTGATCATCAGGAACAGGTTGAAGTATGCT-TTGACTTAC 204
||||||| ||||| |||||||| ||||||||||||||||||||||||||| || || |||
Sbjct 158 GGGAGTGCCTTCCCCTTGTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTT-ACCTAC 216
Query 205 CGTGAAGTTATCTCTATCTTGATGCAAAGGCATATCCAAGTTGATGGCAAAGTCAGGACT 264
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 217 CGTGAAGTGATTTCTATCTTGATGCAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACT 276
Query 265 GACAAGACTTACCCTGCTGGTTTCATGGATGTTGTATCCATCCCCAAGACCAATGAGAAC 324
|||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 277 GACAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCTAAGACCAATGAGAAC 336
Query 325 TTCCGTCTTCTCTACGACACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGAA 384
|||||||||||||| || |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 337 TTCCGTCTTCTCTATGATACCAAGGGCCGTTTCCGTCTCCACTCCATCAGGGATGAGGAA 396
Query 385 GCAAAGTTCAAGCTTTGCAAGGTTAGATCTATCCAGTTTGGTCAGAAGGGAATTCCATAC 444
||| ||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |
Sbjct 397 GCACAGTTCAAGCTTTGCAAGGTCCGATCTATCCAGTTTGGACAGAAGGGCATTCCATTC 456
Query 445 CTGAACACTTATGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCAAATGAC 504
|||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 457 CTGAACACATACGATGGTCGCACCATCCGTTACCCTGACCCTCTCATCAAGCCTAATGAC 516
Query 505 ACCATCAAGCTGGACCTTGAGGAGAACAAGATTGTTGAGTTCATCAAGTTTGACGTGGGT 564
||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 517 ACCATCAAGCTCGACCTTGAGGCCAACAAGATTGTGGAGTTCATCAAGTTTGATGTGGGC 576
Query 565 AACGTTGTGATGGTGACTGGAGGCAGAAACAGAGGGCGTGTGGGTGTGATTAAGAACCGT 624
|| ||||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 577 AATGTTGTGATGGTCACAGGAGGTAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCGT 636
Query 625 GAAAAGCATAAGGGAAGCTTTGAGACAATCCACATTCAAGACTCAACAGGGCATGAGTTT 684
|| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 637 GAGAAGCATAAGGGAAGCTTTGAGACAATCCACATCCAAGACTCAACAGGACATGAGTTT 696
Query 685 GCCACAAGGTTGGGGAATGTGTACACAATCGGCAAAGGAACAAAGCCATGGGTGTCTCTT 744
|| ||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||
Sbjct 697 GCAACAAGGTTGGGGAATGTGTTCACCATTGGCAAAGGTACAAAGCCATGGGTGTCTCTT 756
Query 745 CCAAAGGGCAAAGGTATTAAGCTGACCATCATTGAGGAAGCCAGGAAGAGACTTGCTTCC 804
|| ||||| ||||||||||||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 757 CCCAAGGGTAAAGGTATTAAGCTGACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTGGT 816
Query 805 CAGCAAGCTGCTT 817
|| || |||||||
Sbjct 817 CAACAGGCTGCTT 829
> Ahg931590 jgi|Araly1|931590|scaffold_304047.1
Length=914
Score = 1042 bits (564), Expect = 0.0
Identities = 719/795 (90%), Gaps = 6/795 (1%)
Strand=Plus/Plus
Query 22 GCTGCAAACATGGCAAGAGGATTGAAGAAGCATCTAAAGAGGCTCAATGCTCCTAAGCAT 81
|||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||
Sbjct 99 GCTGCAAACATGGCAAGAGGTTTGAAGAAGCATTTGAAGAGGATCAATGCTCCTAAGCAT 158
Query 82 TGGATGCTTGACAAACTTGGTGGTGCCTTCGCTCCCAAACCATCTTCTGGACCTCACAAG 141
||||||||||| ||||||||||||||||| || ||||| || |||||||| || ||||||
Sbjct 159 TGGATGCTTGATAAACTTGGTGGTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAG 218
Query 142 TCGAGGGAGTGTCTT-CCTCTTGTCCTGATCATCAGGAACAGGTTGAAGTATG-CTTTGA 199
|| ||||||||| || || || || || ||||||||||||||||||||||||| | || |
Sbjct 219 TCTAGGGAGTGT-TTACCCCTGGTTCTTATCATCAGGAACAGGTTGAAGTATGCCCTT-A 276
Query 200 CTTACCGTGAAGTTATCTCTATCTTGATGCAAAGGCATATCCAAGTTGATGGCAAAGTCA 259
| ||| | ||||| ||||| |||||||||||||||||||| ||||||||||| ||||| |
Sbjct 277 CATACAGAGAAGTGATCTCGATCTTGATGCAAAGGCATATTCAAGTTGATGGGAAAGTGA 336
Query 260 GGACTGACAAGACTTACCCTGCTGGTTTCATGGATGTTGTATCCATCCCCAAGACCAATG 319
|||||||||||||||||||||||||||||||||||||||| || ||||| || || ||||
Sbjct 337 GGACTGACAAGACTTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCAAAAACAAATG 396
Query 320 AGAACTTCCGTCTTCTCTACGACACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATG 379
|||||||||||||| | || |||||||||||||| |||||||||||||||||||||||||
Sbjct 397 AGAACTTCCGTCTTTTGTATGACACCAAGGGACGCTTCCGTCTCCACTCCATCAAGGATG 456
Query 380 AGGAAGCAAAGTTCAAGCTTTGCAAGGTTAGATCTATCCAGTTTGGTCAGAAGGGAATTC 439
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 457 AGGAAGCGAAGTTCAAGCTTTGCAAGGTGAGATCGATCCAGTTTGGTCAGAAGGGCATTC 516
Query 440 CATACCTGAACACTTATGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCAA 499
| | | ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 517 CGTTCTTGAACACATATGATGGTCGCACCATCCGTTACCCCGACCCGCTCATCAAGCCTA 576
Query 500 ATGACACCATCAAGCTGGACCTTGAGGAGAACAAGATTGTTGAGTTCATCAAGTTTGACG 559
| |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 577 ACGACACCATCAAGCTTGACCTTGAGGAGAACAAGATTGTGGAGTTCATTAAGTTTGATG 636
Query 560 TGGGTAACGTTGTGATGGTGACTGGAGGCAGAAACAGAGGGCGTGTGGGTGTGATTAAGA 619
|||| || || || ||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 637 TGGGCAATGTAGTTATGGTCACTGGAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGA 696
Query 620 ACCGTGA-AAAGCATAAGGGAAGCTTTGAGACAATCCACATTCAAGACTCAACAGGGCAT 678
||||||| ||| || |||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 697 ACCGTGAGAAA-CACAAGGGAAGCTTTGAAACCATCCACATTCAAGACTCAACAGGACAT 755
Query 679 GAGTTTGCCACAAGGTTGGGGAATGTGTACACAATCGGCAAAGGAACAAAGCCATGGGTG 738
|||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct 756 GAGTTTGCTACAAGGTTGGGAAATGTGTTCACAATCGGGAAAGGAACAAAGCCATGGGTG 815
Query 739 TCTCTTCCAAAGGGCAAAGGTATTAAGCTGACCATCATTGAGGAAGCCAGGAAGAGACTT 798
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 816 TCTCTACCAAAGGGCAAAGGTATTAAGTTGACCATCATTGAGGAAGCCAGGAAGAGACTT 875
Query 799 GCTTCCCAGCAAGCT 813
|| | || ||||||
Sbjct 876 TCTGCTCAACAAGCT 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639029522
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5