BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07100.1
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325325 jgi|Araly1|325325|fgenesh1_pm.C_scaffold_6000545 992 0.0
> Ahg325325 jgi|Araly1|325325|fgenesh1_pm.C_scaffold_6000545
Length=948
Score = 992 bits (537), Expect = 0.0
Identities = 609/645 (94%), Gaps = 0/645 (0%)
Strand=Plus/Plus
Query 316 ACACAACTCCTCCCTTGTTCCTACCATCTATGGTAACTCAGCCTTTACCTCAACTGGATT 375
||||| ||||||| |||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct 287 ACACATCTCCTCCATTGTCCCTACCATCTATGGTAACTCAGTCTTTACCCCAACTGGATG 346
Query 376 TATTCAAATCCGAAATCATGTCGAGTAACAAAACCTCTGATGACGGCTACAATTGGCGCA 435
||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 347 TATCCAAATCTGAAATCATGTCAAGGAACAAAACCTCTGATGACGGCTACAATTGGCGCA 406
Query 436 AATACGGGCAGAAGCAAGTCAAAGGAAGCGAAAACCCGAGGAGTTACTTCAAATGCACGT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AATACGGGCAGAAGCAAGTCAAAGGAAGCGAAAACCCGAGGAGTTACTTCAAATGCACGT 466
Query 496 ATCCAAATTGTCTCACAAAGAAGAAAGTAGAGACGTCTCTTGTGAAGGGTCAGATGATTG 555
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |
Sbjct 467 ATCCAAATTGTCTCACAAAGAAGAAAGTGGAGACGTCACTTGTGAAGGGTCAGATCACAG 526
Query 556 AGATTGTCTATAAAGGAAGCCACAATCATCCCAAGCCCCAATCCACGAAGCGATCATCTT 615
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 527 AGATTGTCTATAAAGGAAGCCACAATCATCCCAAGCCCCAATCCACTAAGAGATCATCTT 586
Query 616 CCACCGCTATAGCAGCACATCAGAACAGCAGTAATGGAGACGGTAAAGACATTGGTGAAG 675
||||| || |||||| || || ||||||||| |||||||||||||||||||||||||||
Sbjct 587 CCACCACTGCAGCAGCGCAACAAAACAGCAGTCATGGAGACGGTAAAGACATTGGTGAAG 646
Query 676 ATGAAACAGAGGCCAAGAGATGGAAAAGAGAAGAGAATGTGAAGGAGCCAAGAGTGGTGG 735
||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 647 ATGAAGCAGACGCCAAGAGATGGAAAAGAGAAGAGAATGTGAAGGAGCCAAGAGTAGTGG 706
Query 736 TTCAGACAACAAGTGATATAGACATTCTTGACGATGGCTACAGATGGAGAAAGTATGGTC 795
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 707 TTCAGACAACAAGTGATATAGACATTCTTGACGATGGCTACAGATGGAGAAAGTATGGCC 766
Query 796 AGAAAGTCGTCAAGGGTAATCCAAATCCAAGGAGCTATTACAAGTGCACATTTACAGGAT 855
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 767 AGAAAGTTGTCAAGGGTAATCCCAATCCAAGGAGCTATTACAAGTGCACATTTACTGGAT 826
Query 856 GTTTTGTAAGGAAACACGTTGAAAGAGCATTTCAAGATCCCAAGTCAGTGATCACAACTT 915
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 827 GTTGTGTAAGGAAACACGTTGAGAGAGCATTTCAAGATCCCAAGTCAGTGATCACAACTT 886
Query 916 ACGAAGGAAAACACAAACACCAAATCCCGACCCCAAGAAGAGGTC 960
||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct 887 ACGAAGGAAAACATAAACACCAAATCCCGACTCCAAAAAGAGGTC 931
Score = 359 bits (194), Expect = 3e-98
Identities = 230/248 (93%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 66 ATGGGCTCTTTTGATCGCCAAAGAGCTGTTCCGAAATTCAAAACAGCAACACCGTCACCG 125
||||||||||| ||||||||||||||||| |||||||||||||||||||| || || |||
Sbjct 1 ATGGGCTCTTTCGATCGCCAAAGAGCTGTCCCGAAATTCAAAACAGCAACTCCATCGCCG 60
Query 126 CTCCCTCTTTCTCCTTCGCCTTACTTCACTATGCCTCCTGGCCTTACTCCCGCCGACTTT 185
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCCCTCTCTCTCCTTCGCCATACTTCACTATGCCTCCTGGCCTTACTCCCGCCGACTTT 120
Query 186 CTCGACTCTCCTCTTCTCTTCACTTCCTCCAACATTTTGCCGTCTCCTACGACAGGCACA 245
|||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 121 CTCGACTCACCTCTTCTCTTCACTTCCTCTAATATTTTGCCGTCTCCAACGACAGGCACA 180
Query 246 TTTCCAGCGCAATCTCTGAACTATAACAATAACGGTTTGCTCATTGACAAAAATGAAATC 305
||||| |||||||||||||||| || || |||||||||||||||||| | |||||||||
Sbjct 181 TTTCCGGCGCAATCTCTGAACTGGAAGAACAACGGTTTGCTCATTGACCAGAATGAAATC 240
Query 306 AAATATGA 313
||||||||
Sbjct 241 AAATATGA 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43231387878
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5