BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07110.1
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940162 jgi|Araly1|940162|scaffold_600706.1 1022 0.0
> Ahg940162 jgi|Araly1|940162|scaffold_600706.1
Length=693
Score = 1022 bits (553), Expect = 0.0
Identities = 635/676 (94%), Gaps = 0/676 (0%)
Strand=Plus/Plus
Query 118 TGCAATGGCTTCTCCTCTTCTCCCAACTTCGACTACTCCTGATCAACTTCCCGGCGGCGA 177
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 18 TGCAATGGCCTCTCCTCTTCTCCCGACTTCGACTACTCCTGATCATCTTCCCGGCGGCGA 77
Query 178 TCCACAGTTGCTGAGCTCTCTACGCGTCCTCTTGTCCCGCGTTCTAGCCACCGTCCGTCA 237
|||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||
Sbjct 78 TCCACAGTTGCTGAGCTCTCTACGCGTCCTTTTGTCCCGAGTTCTAGCCTCTGTCCGTCA 137
Query 238 CGCTTCTGCAGATGCCAGACCCTGGGCAGAGCTCGTTGACCGGTCAGCGTTTTCCCGGCC 297
||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 138 CGCTTCTGCCGATGCCCGGCCCTGGGCAGAGCTCGTTGACCGGTCAGCATTTTCCCGGCC 197
Query 298 ACCATCGCTCTCGGAGGCAACGTCACGAGTAAGGAAGAACTTTTCCTATTTCCGAGCCAA 357
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 198 ACCATCGCTCTCCGAGGCAACGTCACGAGTAAGGAAGAACTTTTCCTACTTCCGGGCCAA 257
Query 358 TTACATAACCTTAGTGGCAATCTTACTCGCCGCGTCTCTGCTCACGCACCCTTTCGCTCT 417
|||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 258 TTACATAACCTTAGTGGCTATCTTATTGGCCGCGTCTCTGCTCACGCACCCTTTCGCTCT 317
Query 418 CTTCCTCCTCGCATCGCTGGCCGCTTCTTGGCTTTTCCTCTACTTTTTCCGTCCGGCGGA 477
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 318 TTTCCTCCTTGCATCGCTGGCCGCTTCTTGGCTTTTCCTCTACTTTTTCCGTCCGTCTGA 377
Query 478 TCAGCCGTTGGTCATTGGAGGACGCACGTTCTCCGATCTTGAGACGCTAGGGATACTCTG 537
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 378 TCAGCCATTGGTCATCGGAGGACGCACGTTCTCCGATCTTGAGACGCTAGGGATGCTCTG 437
Query 538 CCTGTCCACTGTGGTGGTGATGTTCATGACCAGCGTTGGATCGCTCTTGATGTCCACTCT 597
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 438 CCTCTCCACTGTGGTGGTCATGTTCATGACCAGCGTCGGATCGCTCTTGATGTCCACTCT 497
Query 598 AGCAGTTGGGATCATGGGCGTGGCCATCCACGGAGCGTTTCGTGCTCCCGAAGACCTGTT 657
|| |||||| | |||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 498 GGCCGTTGGGGTTATGGCCGTGGCCATCCACGGAGCGTTTCGTGCTCCCGAAGATCTGTT 557
Query 658 TCTTGAAGAACAAGAAGCCATTGGATCTGGACTTTTCGCATTCTTCAACAACAATGCCTC 717
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 558 TCTTGAAGAACAAGAAGCCATTGGATCAGGCCTTTTCGCATTCTTCAACAACAATGCCTC 617
Query 718 TAATGCAGCTGCCGCTGCCATAGCCACCTCAGCAATGTCACGCGTTCGAGTCTGAGATTG 777
||| |||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 618 TAACGCAGCTGCTGCTGCCATAGCCACCTCCGCAATGTCACGAGTTCGAGCCTGAGATTG 677
Query 778 TTGAAGAGACTACATT 793
|||||||||| |||||
Sbjct 678 TTGAAGAGACGACATT 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34463116968
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5