BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G07120.1 Length=2051 Score E Sequences producing significant alignments: (Bits) Value Ahg487534 jgi|Araly1|487534|fgenesh2_kg.6__668__AT5G07120.1 2874 0.0 Ahg495961 jgi|Araly1|495961|fgenesh2_kg.8__1777__AT5G58440.1 1334 0.0 > Ahg487534 jgi|Araly1|487534|fgenesh2_kg.6__668__AT5G07120.1 Length=1864 Score = 2874 bits (1556), Expect = 0.0 Identities = 1768/1869 (95%), Gaps = 19/1869 (1%) Strand=Plus/Plus Query 28 GCCACTCCGCTTATTTATTGCAGTTCACGACCACCGTATCCTCGTAATCTCCGTTATCTC 87 ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1 GCCACTCCGGTTATTTATTGCAGTTCACGATGACCGTATCCTCGTAATCTCCAATATCTC 60 Query 88 GAACCGAATCGAAAAATCCCTAAA-TTCCTGTGAATTTATTACTAAAATTAGCTCACCTT 146 ||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||| Sbjct 61 GAATCGAATCGAAAAA-CCCCAAACTTCCTGTGAATTTATTACTAAAATTAGCTCA-CTT 118 Query 147 -ATAGATTTACCAGAGATGATGGGCTCAGAGAATGACGAAGAGTCCCATCTCCACTCATC 205 ||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct 119 CATAGATTTATCGGAGATGATGGGTTCAGAGAATGACGACGAGTCCCATCTCCACTCGTC 178 Query 206 CAAAGAAGAGATGGAGAAACTCTTTCTCCGCGAAGATGGCGATCCCTTGACCAAAAGCAA 265 |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| | Sbjct 179 CAAAGAAGAGATGGAGAATCTCTTTCTCCGCGAAGATGGCGATCCCTTGACCAGAAGCCA 238 Query 266 TGTCAACGGCGATAAATCCAACTCTAATTATCGCAGCGCTATGTCAACTCTCTTCGACTC 325 |||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||| Sbjct 239 TGTCAACGGCGATAAATCTAACTCTAATTATCGCAGCGCTGTGTCAACTCTCTCCGACTC 298 Query 326 GCGTCACCCGTCGATTGTCGTAACTCCAGCTGATTCCGATCCACTTTTTGCGCCACCGTC 385 ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| Sbjct 299 TCGTCATCCGTCGATTGTAGTAACTCCGGCTGACTCCGATCCACTTTTTGCGCCGCCGTC 358 Query 386 TTACTACAGCGAATCTCGGAGTCCTCGTTCTAAACCAAACGGCGGCGACAGA-GTCAGCT 444 ||||||||| ||||||||||| |||||||||||||||||||||||||||||| || |||| Sbjct 359 TTACTACAGAGAATCTCGGAGCCCTCGTTCTAAACCAAACGGCGGCGACAGAGGT-AGCT 417 Query 445 CTTACCTCGAGCCTCCGTCTTACGCGGATGTTATCTTCAGCCCTTTCGATGATATCTCCG 504 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | Sbjct 418 CTTACCTCGAGCCTCCGTCTTACGCGGATGTTATCTTCAGTCCTTTCGATGATATTTCTG 477 Query 505 AGATCAATGGCTCAGAAGAT-------G--GTCATAGTCAGTCGTCAGATTCATTATCTA 555 ||||||| |||||||||||| | ||||||||||||| |||||||||||||||| Sbjct 478 AGATCAACGGCTCAGAAGATGGCGGAAGCCGTCATAGTCAGTCCTCAGATTCATTATCTA 537 Query 556 GATCTCCGTCTTCTTTGAGCTCTGATTACATCAAGATCACTGTTTCTAACCCTCAGAAAG 615 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 538 GATCTCCGTCTTCTTTGAGCTCCGATTACATCAAGATCACTGTTTCTAACCCTCAGAAAG 597 Query 616 AGCAAGAGGCCACAAATTCAATGATTCCTGGAGGAAGTACTTACATCACTTACCAGATTA 675 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 598 AGCAAGAGGCCACAAATTCAATGATTCCTGGAGGAAGCACTTACATCACTTACCAGATTA 657 Query 676 CAACTAGAACGAATCTCTCTGACTACGGTGGATCGGAGTTTAGCGTGAGGAGAAGATTCA 735 ||||||||||||||||| |||||||||| || |||||||||||||| | |||||||||| Sbjct 658 CAACTAGAACGAATCTCCCTGACTACGGCGGCTCGGAGTTTAGCGTTCGAAGAAGATTCA 717 Query 736 GAGACATTGTTACATTGGCTGATAGATTAGCTGAGTCTTATAGA-GGTTTCTGCATTCCA 794 ||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||| Sbjct 718 GAGACATTGTTACATTGGCTGATAGATTAGCTGAGTCGTATAGAGGGTTT-TGCATCCCA 776 Query 795 CCGAGGCCAGATAAGAGTATAGTTGAGAGTCAAGTGATGCAAAAGCAAGAGTTTGTGGAG 854 |||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| Sbjct 777 CCGAGGCCAGATAAGAGTGTTGTTGAGAGCCAAGTGATGCAAAAGCAAGAGTTTGTGGAG 836 Query 855 CAGAGAAGAGTTGCATTGGAGAAGTATTTGCGTAGGCTTGTTGCACATCCTGTGATCAGG 914 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 837 CAGAGAAGAGTTTCATTGGAGAAGTATTTGCGCAGGCTTGTTGCACATCCTGTGATTAGG 896 Query 915 AACAGTGATGAATTGAAGGTTTTTCTTCAAGCGCAAGGGAAGTTACCGCTTGCTACGAGC 974 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 897 AACAGTGATGAATTGAAGGTTTTTCTTCAGGCGCAAGGGAAGTTACCGCTGGCTACGAGC 956 Query 975 ACAGATGTGGCTTCTAGGATGTTGGATGGTGCTGTGAAGCTGCCGAAACAGTTGTTTGGT 1034 || ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| Sbjct 957 ACTGATGTGGCTTCTAGGATGTTGGATGGTGCCGTGAAGCTGCCGAAGCAGCTGTTTGGT 1016 Query 1035 GAAGGCGGTGGAGCTTCTTCGGTTGAGGTGGTTCAGCCGGGTAGAGGAGGTAGAGATTTT 1094 |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1017 GAAGGCGGAGGAGCTTCTTCGGTTGAGGTGGTTCAGCCGGCTAGAGGAGGTAGAGATTTT 1076 Query 1095 CTGAGAATGTTTAAAGAACTTAGACAGTCAGTTTCTAATGACTGGGGTGGATCAAAACCA 1154 |||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1077 CTGAGATTGTTCAAAGAACTTAGACAGTCGGTCTCTAATGACTGGGGTGGATCAAAACCA 1136 Query 1155 CCTGTTGTGGAAGAAGATAAAGAGTTTTTGGAGAAGAAGGAGAAAATGTATGATCTTGAG 1214 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1137 CCTGTTGTGGAAGAAGATAAAGAGTTTTTGGAGAAGAAGGAGAAGATGTATGATCTTGAG 1196 Query 1215 CAACAGATCATTAATGCTTCACAGCAGGCTGAATCCCTCGTGAAGGCACAGCAAGACATG 1274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 CAACAGATCATTAATGCTTCACAGCAGGCTGAATCCCTCGTGAAGGCACAGCAAGACATG 1256 Query 1275 GGGGAGACTATGGGGGAATTGGGATTAGCATTCATTAAACTGACGAAATTCGAGAACGAA 1334 |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 1257 GGGGAGACTATGGGGGAAATGGGATTAGCATTCATTAAGCTGACGAAATTCGAGAACGAG 1316 Query 1335 GAAGCTGTCTTCAATTCTCAAAGAGCTCGTGCCAATGATATGAAGAATTTAGCCACTTCA 1394 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1317 GAAGCTGTCTTCAATTCTCAAAGAGCTCGTGCCAATGATATGAAGAATTTTGCCACTTCA 1376 Query 1395 GCTGTGAAAGCAAGCAGATTTTACAGAGAGTTGAATTCCCAGACGGTCAAGCATTTGGAC 1454 || || |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1377 GCAGTAAAAGCAAGCAGATTTTACAGAGAGCTGAATTCCCAGACGGTCAAGCATTTGGAC 1436 Query 1455 ACACTCCACGATTACCTTGGCCTAATGATGGCAGTCCAGGGCGCCTTTGCAGATAGATCT 1514 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1437 ACACTCCACGACTACCTTGGCCTAATGATGGCAGTCCAGGGCGCCTTTGCAGATAGATCT 1496 Query 1515 AGTGCTTTATTGACAGTGCAGACGCTTCTATCTGAACTTTCTTCACT-GGAAGCAAGAGC 1573 ||||| ||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||| Sbjct 1497 AGTGCGTTACTGACAGTGCAGACGCTTCTATCTGAGCTTTCTTCACTTGGA-GCAAGAGC 1555 Query 1574 AGAAAAGCTAGAAGTTGCATCATCAAAGGTCTTTGGCGGTGACAAATCAAGGATTAAGAA 1633 ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1556 AGAGAAGCTAGAAGCTGCATCATCAAAGGTCTTTGGCGGTGACAAATCAAGGATTAAGAA 1615 Query 1634 GATAGAAGAGTTAAAAGAAACCATCAAGGTCACTGAAGACTCTAAAAATGTTGCCATCAG 1693 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 1616 GATAGAAGAGTTAAAAGAAACCATCAAGGTCACTGAGGACTCCAAAAATGTTGCGATCAG 1675 Query 1694 GGAGTACGAGCAGATCAAGGAAAATAACTGGAGTGAGGTTGAAAGGCTGGATAGGGAAAG 1753 ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 1676 GGAGTACGAGCAGATCAAGGAAAATAACTGGTGTGAGGTTGAAAGGCTGGACAGGGAAAG 1735 Query 1754 GCGTGCAGACTTCTTGAATATGATGAAAGGGTTTGTTGCTAATCAGGTTGGATATGCAGA 1813 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1736 GCGTGCAGACTTCTTGAATATGATGAAAGGGTTTGTTGTTAATCAGGTTGGATATGCAGA 1795 Query 1814 GAAGATCGCCAATGTGTGGACAAAGGTTGCTGAGGAAACAAGGCAATACGATAGAGAGAG 1873 |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| Sbjct 1796 GAAGATCGCCAATGTGTGGACAAAGGTTGCTGAGGAGACAAGTCAATACGGTAGAGAGAG 1855 Query 1874 CTCTTAACA 1882 ||||||||| Sbjct 1856 CTCTTAACA 1864 > Ahg495961 jgi|Araly1|495961|fgenesh2_kg.8__1777__AT5G58440.1 Length=2085 Score = 1334 bits (722), Expect = 0.0 Identities = 1225/1464 (84%), Gaps = 50/1464 (3%) Strand=Plus/Plus Query 443 CTCTTACCTCGAGCCTCCGTCTTACGCGGATGTTATCTTCAG-CCCTTTCGATGA-TA-T 499 ||| ||| |||||||||||||||| || |||||||||||||| |||||| ||||| | | Sbjct 390 CTCCTACATCGAGCCTCCGTCTTATGCAGATGTTATCTTCAGTCCCTTT-GATGAGAACT 448 Query 500 C---T-CCGAGATCAATGGCTCAGAAGAT-G--G---TCATAGTC-AGTCGTCAGATTCA 548 | | |||||| || ||| | || ||| | | |||||||| | || ||||||||| Sbjct 449 CAGATAGCGAGATTAACGGCGCCGATGATAGTAGCCTTCATAGTCAATTC-TCAGATTCA 507 Query 549 TTATCTAGATCTCCGTCTTC-TTTGAGCTCTGATTACATCAAGATCACTGTTTCTAACCC 607 |||| |||||||| ||||| | | |||||||||||||| ||||||||||| || ||||| Sbjct 508 CTATCGAGATCTCCTTCTTCGTCT-AGCTCTGATTACATTAAGATCACTGTATCGAACCC 566 Query 608 TCAGAAAGAGCAAGAGGCCACAAATT-CAATGATTCCTGGAGGAAGTACTTACATCACTT 666 |||||||||||| ||| | |||||| || || | |||||||| ||||| ||||| | Sbjct 567 TCAGAAAGAGCAGGAGACTTCAAATTCCATTG--T--TGGAGGAAACACTTATATCACCT 622 Query 667 ACCAGATTACAACTAGAACGAATCTCTCTGACTACGGTGG---ATCGGAGTTTAGCGTGA 723 |||| ||||| || |||||||||||| |||||| |||||| |||||||||||||||| Sbjct 623 ACCAAATTACGACCAGAACGAATCTCCCTGACTTCGGTGGCCCATCGGAGTTTAGCGTGC 682 Query 724 GGAGAAGATTCAGAGACATTGTTACATTGGCTGATAGATTAGCTGAGTCTTATAGAGGTT 783 | |||||||||||||| |||| |||||||| ||| |||| |||||||| |||||||| | Sbjct 683 GAAGAAGATTCAGAGATGTTGTCACATTGGCAGATCGATTGGCTGAGTCGTATAGAGGGT 742 Query 784 TCTGCATTCCACCGA-GGCCAGATAAGAGTATAGTTGAGAGTCAAGTGATGCA-AAAGCA 841 ||||||| ||||| | |||| || ||||| | || ||||| ||||| ||||| ||| || Sbjct 743 TCTGCATACCACC-ACGGCCGGACAAGAGCGTCGTAGAGAGCCAAGTAATGCAGAAA-CA 800 Query 842 AGAGTTTGTGGAGCAGAGAAGAGTTGCATTGGAGAAGTATTTGCGTAGGCT-TGTTGCAC 900 |||||| |||||||| |||||||||||||||||||| || ||||| ||||| | ||||| Sbjct 801 AGAGTTCGTGGAGCAAAGAAGAGTTGCATTGGAGAAATACTTGCGCAGGCTAAG-TGCAC 859 Query 901 ATCCTGTGATCAGGAACAGTGATGAATTGAAGGTTTTTCTTCAAGCGCAAGGGAAGTTAC 960 | ||||| |||||||||||||| || ||||| || |||||||| | ||||||||||| | Sbjct 860 ACCCTGTTATCAGGAACAGTGACGAGTTGAAAGTGTTTCTTCAGGTTCAAGGGAAGTTGC 919 Query 961 CGCTTGCTACGAGCACAGATGTGGCTTCTAGGATGTTGGATGGTGCTGTGAAGCTGCCGA 1020 | || | | ||| || |||||||| ||| ||||||||||||| || |||||||| || | Sbjct 920 CACTACCAATGAGTACTGATGTGGCCTCTCGGATGTTGGATGGCGCGGTGAAGCTCCCAA 979 Query 1021 AACAGTTGTTTGGTGAAGGCGGTGGAGCTTC--T-TC-G-G-TTGAGGTGGTTCAGCCGG 1074 |||||||||||||||||||||| | || | | | | | ||||||||||||||| | Sbjct 980 AACAGTTGTTTGGTGAAGGCGGAGCCTCTGCGGTGCCAGTGCATGAGGTGGTTCAGCCTG 1039 Query 1075 GTAGAGGAGGTAGAGATTTTCTGAGAATGTTTAAAGAACTTAGACAGTCAGTTTCTAATG 1134 ||||||||||| ||| | |||||| | || || || || || |||||||||||||||| Sbjct 1040 CAAGAGGAGGTAGGGATCTGCTGAGATTATTCAAGGAGCTGAGGCAGTCAGTTTCTAATG 1099 Query 1135 ACTGGGGTGGATCAAAACCACCTGTTGTGGAAGAAGATAAAGAGTTTTTGGAGAAGAAGG 1194 ||||||||||||||||||| || ||||| |||||||||||||| || ||||| ||||||| Sbjct 1100 ACTGGGGTGGATCAAAACCTCCCGTTGTTGAAGAAGATAAAGAATTCTTGGAAAAGAAGG 1159 Query 1195 AGAAAATGTATGATCTTGAGCAACAGATCATTAATGCTTCACAGCAGGCTGAATCCCTCG 1254 |||| ||| ||||||||||||| || || || ||||| ||||||||||| |||||||| | Sbjct 1160 AGAAGATGCATGATCTTGAGCAGCAAATTATCAATGCCTCACAGCAGGCAGAATCCCTTG 1219 Query 1255 TGAAGGCACAGCAAGACATGGGGGAGACTATGGGGGAATTGGGATTAGCATTCATTAAA- 1313 ||||||||||||||||||||||||| || ||||| ||| |||||||||||||||| ||| Sbjct 1220 TGAAGGCACAGCAAGACATGGGGGAAACCATGGGTGAACTGGGATTAGCATTCAT-AAAG 1278 Query 1314 CTGACGAAATTCGAGAACGAAGAAGCTGTCTT-CAATTCTCAAAGAGCTCGTGCCAATGA 1372 ||||| || ||||||||||||||||||| ||| ||| ||||||||| ||||||| ||||| Sbjct 1279 CTGACTAAGTTCGAGAACGAAGAAGCTG-CTTACAACTCTCAAAGAACTCGTGCTAATGA 1337 Query 1373 TATGAAGAATTTAGCCACTTCAGCTGTGAAAGCAAGCAGATTTTACAGAGAGTTGAATTC 1432 ||||||||||||||||||| | ||||| ||||||||||||||||| || ||||||||||| Sbjct 1338 TATGAAGAATTTAGCCACTGCGGCTGTAAAAGCAAGCAGATTTTATAGGGAGTTGAATTC 1397 Query 1433 CCAGACGGTCAAGCATTTGGACACACTCCACGATTACCTTGGCCTAATGATGGCAGTCCA 1492 ||| || ||||| || |||||||||||||| || ||||||||| | |||||||| ||||| Sbjct 1398 CCAAACTGTCAAACACTTGGACACACTCCATGAGTACCTTGGCATGATGATGGCTGTCCA 1457 Query 1493 GGGCGCCTTTGCAGATAGATCTAGTGCTTTATTGACAGTGCAGACGCTTCTATCTGAACT 1552 ||||| |||||||||||||||||||||||| |||| || ||||||||||| || || || Sbjct 1458 AGGCGCATTTGCAGATAGATCTAGTGCTTTACTGACTGTTCAGACGCTTCTGTCAGAGCT 1517 Query 1553 TTCTTCACTGGAAGCAAGAG-CAGAAAAGCTAGAAGTTGCATCATCAAAGGTCTTTGGCG 1611 | |||| ||| || | |||| | ||||||||||| | ||||||||| ||||| ||||||| Sbjct 1518 TCCTTCGCTGCAAACTAGAGTC-GAAAAGCTAGAGGCTGCATCATCGAAGGTATTTGGCG 1576 Query 1612 GTGACAAATCAAGGATTAAGAAGA-TAGAAGAGTTAAAAGAAACCATCAAGGTCACTGAA 1670 |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| Sbjct 1577 GTGACAAATCAAGGATCC-GAAAAATAGAAGAGTTAAAAGAAACCATCAAGGTCACTGAG 1635 Query 1671 GACTCTAAAAATGTTGCCATCAGGGAGTACGAGCAGATCAAGGAAAATAACTGGAG-TGA 1729 ||| | ||||||||||||||||| || ||||||| |||||||||||| ||| | | ||| Sbjct 1636 GACGCAAAAAATGTTGCCATCAGAGAATACGAGCGGATCAAGGAAAACAACCG-ATCTGA 1694 Query 1730 GGTTGAAAGGCTGGATAGGGAAAGGCGTGCAGACTTCTTGAATATGATGAAAGGGTTT-G 1788 |||||| ||| |||| || |||||||||||||||||| |||| |||||||| |||||| | Sbjct 1695 GGTTGAGAGGTTGGACAGAGAAAGGCGTGCAGACTTCATGAACATGATGAA-GGGTTTTG 1753 Query 1789 TTGCTAATCAGGTTGGATATGCAGAGAAGATCGCCAATGTGTGGACAAAGGTTGCTGAGG 1848 ||| ||| ||||||||||| |||||||| || | || || ||| |||||||||| || | Sbjct 1754 TTGTTAACCAGGTTGGATACGCAGAGAAAATGGGAAACGTCTGGGCAAAGGTTGCAGAAG 1813 Query 1849 AAACAAGGCAATACGATAGAGAGA 1872 | || || |||||||||||||||| Sbjct 1814 AGACCAGCCAATACGATAGAGAGA 1837 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77132746125 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5