BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07120.1
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487534 jgi|Araly1|487534|fgenesh2_kg.6__668__AT5G07120.1 2874 0.0
Ahg495961 jgi|Araly1|495961|fgenesh2_kg.8__1777__AT5G58440.1 1334 0.0
> Ahg487534 jgi|Araly1|487534|fgenesh2_kg.6__668__AT5G07120.1
Length=1864
Score = 2874 bits (1556), Expect = 0.0
Identities = 1768/1869 (95%), Gaps = 19/1869 (1%)
Strand=Plus/Plus
Query 28 GCCACTCCGCTTATTTATTGCAGTTCACGACCACCGTATCCTCGTAATCTCCGTTATCTC 87
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1 GCCACTCCGGTTATTTATTGCAGTTCACGATGACCGTATCCTCGTAATCTCCAATATCTC 60
Query 88 GAACCGAATCGAAAAATCCCTAAA-TTCCTGTGAATTTATTACTAAAATTAGCTCACCTT 146
||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 61 GAATCGAATCGAAAAA-CCCCAAACTTCCTGTGAATTTATTACTAAAATTAGCTCA-CTT 118
Query 147 -ATAGATTTACCAGAGATGATGGGCTCAGAGAATGACGAAGAGTCCCATCTCCACTCATC 205
||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 119 CATAGATTTATCGGAGATGATGGGTTCAGAGAATGACGACGAGTCCCATCTCCACTCGTC 178
Query 206 CAAAGAAGAGATGGAGAAACTCTTTCTCCGCGAAGATGGCGATCCCTTGACCAAAAGCAA 265
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
Sbjct 179 CAAAGAAGAGATGGAGAATCTCTTTCTCCGCGAAGATGGCGATCCCTTGACCAGAAGCCA 238
Query 266 TGTCAACGGCGATAAATCCAACTCTAATTATCGCAGCGCTATGTCAACTCTCTTCGACTC 325
|||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||
Sbjct 239 TGTCAACGGCGATAAATCTAACTCTAATTATCGCAGCGCTGTGTCAACTCTCTCCGACTC 298
Query 326 GCGTCACCCGTCGATTGTCGTAACTCCAGCTGATTCCGATCCACTTTTTGCGCCACCGTC 385
||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| |||||
Sbjct 299 TCGTCATCCGTCGATTGTAGTAACTCCGGCTGACTCCGATCCACTTTTTGCGCCGCCGTC 358
Query 386 TTACTACAGCGAATCTCGGAGTCCTCGTTCTAAACCAAACGGCGGCGACAGA-GTCAGCT 444
||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 359 TTACTACAGAGAATCTCGGAGCCCTCGTTCTAAACCAAACGGCGGCGACAGAGGT-AGCT 417
Query 445 CTTACCTCGAGCCTCCGTCTTACGCGGATGTTATCTTCAGCCCTTTCGATGATATCTCCG 504
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 418 CTTACCTCGAGCCTCCGTCTTACGCGGATGTTATCTTCAGTCCTTTCGATGATATTTCTG 477
Query 505 AGATCAATGGCTCAGAAGAT-------G--GTCATAGTCAGTCGTCAGATTCATTATCTA 555
||||||| |||||||||||| | ||||||||||||| ||||||||||||||||
Sbjct 478 AGATCAACGGCTCAGAAGATGGCGGAAGCCGTCATAGTCAGTCCTCAGATTCATTATCTA 537
Query 556 GATCTCCGTCTTCTTTGAGCTCTGATTACATCAAGATCACTGTTTCTAACCCTCAGAAAG 615
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 538 GATCTCCGTCTTCTTTGAGCTCCGATTACATCAAGATCACTGTTTCTAACCCTCAGAAAG 597
Query 616 AGCAAGAGGCCACAAATTCAATGATTCCTGGAGGAAGTACTTACATCACTTACCAGATTA 675
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 AGCAAGAGGCCACAAATTCAATGATTCCTGGAGGAAGCACTTACATCACTTACCAGATTA 657
Query 676 CAACTAGAACGAATCTCTCTGACTACGGTGGATCGGAGTTTAGCGTGAGGAGAAGATTCA 735
||||||||||||||||| |||||||||| || |||||||||||||| | ||||||||||
Sbjct 658 CAACTAGAACGAATCTCCCTGACTACGGCGGCTCGGAGTTTAGCGTTCGAAGAAGATTCA 717
Query 736 GAGACATTGTTACATTGGCTGATAGATTAGCTGAGTCTTATAGA-GGTTTCTGCATTCCA 794
||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||
Sbjct 718 GAGACATTGTTACATTGGCTGATAGATTAGCTGAGTCGTATAGAGGGTTT-TGCATCCCA 776
Query 795 CCGAGGCCAGATAAGAGTATAGTTGAGAGTCAAGTGATGCAAAAGCAAGAGTTTGTGGAG 854
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 777 CCGAGGCCAGATAAGAGTGTTGTTGAGAGCCAAGTGATGCAAAAGCAAGAGTTTGTGGAG 836
Query 855 CAGAGAAGAGTTGCATTGGAGAAGTATTTGCGTAGGCTTGTTGCACATCCTGTGATCAGG 914
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 837 CAGAGAAGAGTTTCATTGGAGAAGTATTTGCGCAGGCTTGTTGCACATCCTGTGATTAGG 896
Query 915 AACAGTGATGAATTGAAGGTTTTTCTTCAAGCGCAAGGGAAGTTACCGCTTGCTACGAGC 974
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 897 AACAGTGATGAATTGAAGGTTTTTCTTCAGGCGCAAGGGAAGTTACCGCTGGCTACGAGC 956
Query 975 ACAGATGTGGCTTCTAGGATGTTGGATGGTGCTGTGAAGCTGCCGAAACAGTTGTTTGGT 1034
|| ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 957 ACTGATGTGGCTTCTAGGATGTTGGATGGTGCCGTGAAGCTGCCGAAGCAGCTGTTTGGT 1016
Query 1035 GAAGGCGGTGGAGCTTCTTCGGTTGAGGTGGTTCAGCCGGGTAGAGGAGGTAGAGATTTT 1094
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1017 GAAGGCGGAGGAGCTTCTTCGGTTGAGGTGGTTCAGCCGGCTAGAGGAGGTAGAGATTTT 1076
Query 1095 CTGAGAATGTTTAAAGAACTTAGACAGTCAGTTTCTAATGACTGGGGTGGATCAAAACCA 1154
|||||| |||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1077 CTGAGATTGTTCAAAGAACTTAGACAGTCGGTCTCTAATGACTGGGGTGGATCAAAACCA 1136
Query 1155 CCTGTTGTGGAAGAAGATAAAGAGTTTTTGGAGAAGAAGGAGAAAATGTATGATCTTGAG 1214
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1137 CCTGTTGTGGAAGAAGATAAAGAGTTTTTGGAGAAGAAGGAGAAGATGTATGATCTTGAG 1196
Query 1215 CAACAGATCATTAATGCTTCACAGCAGGCTGAATCCCTCGTGAAGGCACAGCAAGACATG 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CAACAGATCATTAATGCTTCACAGCAGGCTGAATCCCTCGTGAAGGCACAGCAAGACATG 1256
Query 1275 GGGGAGACTATGGGGGAATTGGGATTAGCATTCATTAAACTGACGAAATTCGAGAACGAA 1334
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 GGGGAGACTATGGGGGAAATGGGATTAGCATTCATTAAGCTGACGAAATTCGAGAACGAG 1316
Query 1335 GAAGCTGTCTTCAATTCTCAAAGAGCTCGTGCCAATGATATGAAGAATTTAGCCACTTCA 1394
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1317 GAAGCTGTCTTCAATTCTCAAAGAGCTCGTGCCAATGATATGAAGAATTTTGCCACTTCA 1376
Query 1395 GCTGTGAAAGCAAGCAGATTTTACAGAGAGTTGAATTCCCAGACGGTCAAGCATTTGGAC 1454
|| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1377 GCAGTAAAAGCAAGCAGATTTTACAGAGAGCTGAATTCCCAGACGGTCAAGCATTTGGAC 1436
Query 1455 ACACTCCACGATTACCTTGGCCTAATGATGGCAGTCCAGGGCGCCTTTGCAGATAGATCT 1514
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 ACACTCCACGACTACCTTGGCCTAATGATGGCAGTCCAGGGCGCCTTTGCAGATAGATCT 1496
Query 1515 AGTGCTTTATTGACAGTGCAGACGCTTCTATCTGAACTTTCTTCACT-GGAAGCAAGAGC 1573
||||| ||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 1497 AGTGCGTTACTGACAGTGCAGACGCTTCTATCTGAGCTTTCTTCACTTGGA-GCAAGAGC 1555
Query 1574 AGAAAAGCTAGAAGTTGCATCATCAAAGGTCTTTGGCGGTGACAAATCAAGGATTAAGAA 1633
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 AGAGAAGCTAGAAGCTGCATCATCAAAGGTCTTTGGCGGTGACAAATCAAGGATTAAGAA 1615
Query 1634 GATAGAAGAGTTAAAAGAAACCATCAAGGTCACTGAAGACTCTAAAAATGTTGCCATCAG 1693
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1616 GATAGAAGAGTTAAAAGAAACCATCAAGGTCACTGAGGACTCCAAAAATGTTGCGATCAG 1675
Query 1694 GGAGTACGAGCAGATCAAGGAAAATAACTGGAGTGAGGTTGAAAGGCTGGATAGGGAAAG 1753
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1676 GGAGTACGAGCAGATCAAGGAAAATAACTGGTGTGAGGTTGAAAGGCTGGACAGGGAAAG 1735
Query 1754 GCGTGCAGACTTCTTGAATATGATGAAAGGGTTTGTTGCTAATCAGGTTGGATATGCAGA 1813
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1736 GCGTGCAGACTTCTTGAATATGATGAAAGGGTTTGTTGTTAATCAGGTTGGATATGCAGA 1795
Query 1814 GAAGATCGCCAATGTGTGGACAAAGGTTGCTGAGGAAACAAGGCAATACGATAGAGAGAG 1873
|||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||
Sbjct 1796 GAAGATCGCCAATGTGTGGACAAAGGTTGCTGAGGAGACAAGTCAATACGGTAGAGAGAG 1855
Query 1874 CTCTTAACA 1882
|||||||||
Sbjct 1856 CTCTTAACA 1864
> Ahg495961 jgi|Araly1|495961|fgenesh2_kg.8__1777__AT5G58440.1
Length=2085
Score = 1334 bits (722), Expect = 0.0
Identities = 1225/1464 (84%), Gaps = 50/1464 (3%)
Strand=Plus/Plus
Query 443 CTCTTACCTCGAGCCTCCGTCTTACGCGGATGTTATCTTCAG-CCCTTTCGATGA-TA-T 499
||| ||| |||||||||||||||| || |||||||||||||| |||||| ||||| | |
Sbjct 390 CTCCTACATCGAGCCTCCGTCTTATGCAGATGTTATCTTCAGTCCCTTT-GATGAGAACT 448
Query 500 C---T-CCGAGATCAATGGCTCAGAAGAT-G--G---TCATAGTC-AGTCGTCAGATTCA 548
| | |||||| || ||| | || ||| | | |||||||| | || |||||||||
Sbjct 449 CAGATAGCGAGATTAACGGCGCCGATGATAGTAGCCTTCATAGTCAATTC-TCAGATTCA 507
Query 549 TTATCTAGATCTCCGTCTTC-TTTGAGCTCTGATTACATCAAGATCACTGTTTCTAACCC 607
|||| |||||||| ||||| | | |||||||||||||| ||||||||||| || |||||
Sbjct 508 CTATCGAGATCTCCTTCTTCGTCT-AGCTCTGATTACATTAAGATCACTGTATCGAACCC 566
Query 608 TCAGAAAGAGCAAGAGGCCACAAATT-CAATGATTCCTGGAGGAAGTACTTACATCACTT 666
|||||||||||| ||| | |||||| || || | |||||||| ||||| ||||| |
Sbjct 567 TCAGAAAGAGCAGGAGACTTCAAATTCCATTG--T--TGGAGGAAACACTTATATCACCT 622
Query 667 ACCAGATTACAACTAGAACGAATCTCTCTGACTACGGTGG---ATCGGAGTTTAGCGTGA 723
|||| ||||| || |||||||||||| |||||| |||||| ||||||||||||||||
Sbjct 623 ACCAAATTACGACCAGAACGAATCTCCCTGACTTCGGTGGCCCATCGGAGTTTAGCGTGC 682
Query 724 GGAGAAGATTCAGAGACATTGTTACATTGGCTGATAGATTAGCTGAGTCTTATAGAGGTT 783
| |||||||||||||| |||| |||||||| ||| |||| |||||||| |||||||| |
Sbjct 683 GAAGAAGATTCAGAGATGTTGTCACATTGGCAGATCGATTGGCTGAGTCGTATAGAGGGT 742
Query 784 TCTGCATTCCACCGA-GGCCAGATAAGAGTATAGTTGAGAGTCAAGTGATGCA-AAAGCA 841
||||||| ||||| | |||| || ||||| | || ||||| ||||| ||||| ||| ||
Sbjct 743 TCTGCATACCACC-ACGGCCGGACAAGAGCGTCGTAGAGAGCCAAGTAATGCAGAAA-CA 800
Query 842 AGAGTTTGTGGAGCAGAGAAGAGTTGCATTGGAGAAGTATTTGCGTAGGCT-TGTTGCAC 900
|||||| |||||||| |||||||||||||||||||| || ||||| ||||| | |||||
Sbjct 801 AGAGTTCGTGGAGCAAAGAAGAGTTGCATTGGAGAAATACTTGCGCAGGCTAAG-TGCAC 859
Query 901 ATCCTGTGATCAGGAACAGTGATGAATTGAAGGTTTTTCTTCAAGCGCAAGGGAAGTTAC 960
| ||||| |||||||||||||| || ||||| || |||||||| | ||||||||||| |
Sbjct 860 ACCCTGTTATCAGGAACAGTGACGAGTTGAAAGTGTTTCTTCAGGTTCAAGGGAAGTTGC 919
Query 961 CGCTTGCTACGAGCACAGATGTGGCTTCTAGGATGTTGGATGGTGCTGTGAAGCTGCCGA 1020
| || | | ||| || |||||||| ||| ||||||||||||| || |||||||| || |
Sbjct 920 CACTACCAATGAGTACTGATGTGGCCTCTCGGATGTTGGATGGCGCGGTGAAGCTCCCAA 979
Query 1021 AACAGTTGTTTGGTGAAGGCGGTGGAGCTTC--T-TC-G-G-TTGAGGTGGTTCAGCCGG 1074
|||||||||||||||||||||| | || | | | | | ||||||||||||||| |
Sbjct 980 AACAGTTGTTTGGTGAAGGCGGAGCCTCTGCGGTGCCAGTGCATGAGGTGGTTCAGCCTG 1039
Query 1075 GTAGAGGAGGTAGAGATTTTCTGAGAATGTTTAAAGAACTTAGACAGTCAGTTTCTAATG 1134
||||||||||| ||| | |||||| | || || || || || ||||||||||||||||
Sbjct 1040 CAAGAGGAGGTAGGGATCTGCTGAGATTATTCAAGGAGCTGAGGCAGTCAGTTTCTAATG 1099
Query 1135 ACTGGGGTGGATCAAAACCACCTGTTGTGGAAGAAGATAAAGAGTTTTTGGAGAAGAAGG 1194
||||||||||||||||||| || ||||| |||||||||||||| || ||||| |||||||
Sbjct 1100 ACTGGGGTGGATCAAAACCTCCCGTTGTTGAAGAAGATAAAGAATTCTTGGAAAAGAAGG 1159
Query 1195 AGAAAATGTATGATCTTGAGCAACAGATCATTAATGCTTCACAGCAGGCTGAATCCCTCG 1254
|||| ||| ||||||||||||| || || || ||||| ||||||||||| |||||||| |
Sbjct 1160 AGAAGATGCATGATCTTGAGCAGCAAATTATCAATGCCTCACAGCAGGCAGAATCCCTTG 1219
Query 1255 TGAAGGCACAGCAAGACATGGGGGAGACTATGGGGGAATTGGGATTAGCATTCATTAAA- 1313
||||||||||||||||||||||||| || ||||| ||| |||||||||||||||| |||
Sbjct 1220 TGAAGGCACAGCAAGACATGGGGGAAACCATGGGTGAACTGGGATTAGCATTCAT-AAAG 1278
Query 1314 CTGACGAAATTCGAGAACGAAGAAGCTGTCTT-CAATTCTCAAAGAGCTCGTGCCAATGA 1372
||||| || ||||||||||||||||||| ||| ||| ||||||||| ||||||| |||||
Sbjct 1279 CTGACTAAGTTCGAGAACGAAGAAGCTG-CTTACAACTCTCAAAGAACTCGTGCTAATGA 1337
Query 1373 TATGAAGAATTTAGCCACTTCAGCTGTGAAAGCAAGCAGATTTTACAGAGAGTTGAATTC 1432
||||||||||||||||||| | ||||| ||||||||||||||||| || |||||||||||
Sbjct 1338 TATGAAGAATTTAGCCACTGCGGCTGTAAAAGCAAGCAGATTTTATAGGGAGTTGAATTC 1397
Query 1433 CCAGACGGTCAAGCATTTGGACACACTCCACGATTACCTTGGCCTAATGATGGCAGTCCA 1492
||| || ||||| || |||||||||||||| || ||||||||| | |||||||| |||||
Sbjct 1398 CCAAACTGTCAAACACTTGGACACACTCCATGAGTACCTTGGCATGATGATGGCTGTCCA 1457
Query 1493 GGGCGCCTTTGCAGATAGATCTAGTGCTTTATTGACAGTGCAGACGCTTCTATCTGAACT 1552
||||| |||||||||||||||||||||||| |||| || ||||||||||| || || ||
Sbjct 1458 AGGCGCATTTGCAGATAGATCTAGTGCTTTACTGACTGTTCAGACGCTTCTGTCAGAGCT 1517
Query 1553 TTCTTCACTGGAAGCAAGAG-CAGAAAAGCTAGAAGTTGCATCATCAAAGGTCTTTGGCG 1611
| |||| ||| || | |||| | ||||||||||| | ||||||||| ||||| |||||||
Sbjct 1518 TCCTTCGCTGCAAACTAGAGTC-GAAAAGCTAGAGGCTGCATCATCGAAGGTATTTGGCG 1576
Query 1612 GTGACAAATCAAGGATTAAGAAGA-TAGAAGAGTTAAAAGAAACCATCAAGGTCACTGAA 1670
|||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1577 GTGACAAATCAAGGATCC-GAAAAATAGAAGAGTTAAAAGAAACCATCAAGGTCACTGAG 1635
Query 1671 GACTCTAAAAATGTTGCCATCAGGGAGTACGAGCAGATCAAGGAAAATAACTGGAG-TGA 1729
||| | ||||||||||||||||| || ||||||| |||||||||||| ||| | | |||
Sbjct 1636 GACGCAAAAAATGTTGCCATCAGAGAATACGAGCGGATCAAGGAAAACAACCG-ATCTGA 1694
Query 1730 GGTTGAAAGGCTGGATAGGGAAAGGCGTGCAGACTTCTTGAATATGATGAAAGGGTTT-G 1788
|||||| ||| |||| || |||||||||||||||||| |||| |||||||| |||||| |
Sbjct 1695 GGTTGAGAGGTTGGACAGAGAAAGGCGTGCAGACTTCATGAACATGATGAA-GGGTTTTG 1753
Query 1789 TTGCTAATCAGGTTGGATATGCAGAGAAGATCGCCAATGTGTGGACAAAGGTTGCTGAGG 1848
||| ||| ||||||||||| |||||||| || | || || ||| |||||||||| || |
Sbjct 1754 TTGTTAACCAGGTTGGATACGCAGAGAAAATGGGAAACGTCTGGGCAAAGGTTGCAGAAG 1813
Query 1849 AAACAAGGCAATACGATAGAGAGA 1872
| || || ||||||||||||||||
Sbjct 1814 AGACCAGCCAATACGATAGAGAGA 1837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77132746125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5