BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07130.1
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325328 jgi|Araly1|325328|fgenesh1_pm.C_scaffold_6000548 2765 0.0
> Ahg325328 jgi|Araly1|325328|fgenesh1_pm.C_scaffold_6000548
Length=1710
Score = 2765 bits (1497), Expect = 0.0
Identities = 1640/1711 (96%), Gaps = 2/1711 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCAACTTCGACCCTTCTTTCTGTTGTTGGCTATTTTTG-TAGCTTCACTTGTCAA 59
||||||||| | || |||||||| |||| |||||| ||||| ||||||||||||||||
Sbjct 1 ATGGAGCAAATACGGTCCTTCTTTGTGTTCTTGGCT-GTTTTGTTAGCTTCACTTGTCAA 59
Query 60 TGCAGAAGTTCACTTTCATGAGTTTGTTATCCAAGAAACGCCGGTGAAGAGGCTGTGCAG 119
|||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 60 TGCAGAAGTTCACTTTCATGAGTTTGTTGTTCAAGAGACGCCGGTGAAGAGGCTGTGCAG 119
Query 120 AGTCCATAACTCGATCACGGTGAATGGACAGTTTCCAGGGCCAACCTTGGAGGTGAGGAA 179
||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 120 AGTTCATAACTCGATCACGGTGAATGGACAGTTTCCAGGGCCGACCTTGGAGGTGCGAAA 179
Query 180 CGGCGATTCCCTTGTCATTACAGCCATAAACAAAGCTCGGTACAACATCAGCCTTCACTG 239
||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 180 CGGTGATTCCCTTGTCATCACAGCCATAAACAAAGCTCGGTACAACATCACCCTCCACTG 239
Query 240 GCATGGGATACGGCAGATGAGGAATCCATGGGCGGATGGACCAGAATACATAACCCAGTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCATGGGATACGGCAGATGAGGAATCCATGGGCGGATGGACCAGAATACATAACCCAGTG 299
Query 300 CCCAATCCAACCAGGAGGGAGTTACACCTACAGGTTTACCATGGAAGACCAAGAAGGTAC 359
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 300 CCCAATCCAACCAGGAGGGAGTTACACGTACAGGTTCACCATTGAAGACCAAGAAGGTAC 359
Query 360 ATTGTGGTGGCATGCCCACAGTAGATGGCTGCGAGCCACCGTGTATGGTGCTCTCATTAT 419
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GTTGTGGTGGCATGCCCACAGTAGATGGCTGCGAGCCACCGTGTATGGCGCTCTCATTAT 419
Query 420 CCGCCCTCCGCTCTCTTCTCCTCATTACCCTTTTCCAGTTATTCCCAAGAGAGAGATTAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCGCCCTCCGCTCTCTTCTCCTCATTACCCTTTTCCAGTTATTCCCAAGAGAGAGATTAC 479
Query 480 CCTCCTCTTAGGAGAGTGGTGGGACAGAAATCCCATGGATGTCCTCAACTTAGCCCAGTT 539
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 CCTCCTCTTAGGGGAGTGGTGGGACAGAAACCCCATGGATGTCCTCAACTTAGCCCAGTT 539
Query 540 CACTGGAGCAGCACCAAACATCTCAGACGCCTTTACCATCAATGGTCAGCCTGGTGATCT 599
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 540 CACCGGAGCAGCACCAAACATCTCAGACGCCTTCACCATCAATGGTCAGCCTGGCGATCT 599
Query 600 CTACAGATGCTCCAGCCAAGAAACTTTAAGATTTCTAGTGGGGTCAGGAGAGATAGTCCT 659
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 CTACAGATGTTCTAGCCAAGAAACTTTAAGATTTCTAGTGGGGTCAGGAGAGATTGTCCT 659
Query 660 CCTCAGGGTCATCAACTCTGCTTTGAACCAAGAACTCTTCTTTGGTGTCGCGAATCACAA 719
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 CCTCAGGGTCATCAATTCTGCTTTGAACCAAGAACTCTTCTTTGGTGTCGCTAATCACAA 719
Query 720 ACTCACAGTGGTTGCGGCGGATGCCTCCTACACCAAACCATTCTCGACCAATGTCATAAT 779
||| |||||||| || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 720 ACTGACAGTGGTCGCTGCGGATGCCTCCTACACCAAACCTTTCTCGACTAATGTCATAAT 779
Query 780 GTTAGGTCCTGGTCAGACAACTGATGTGCTTCTAACTGCAGACCAACCGCCAGCACACTA 839
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 780 GTTAGGTCCAGGTCAGACAACTGATGTGCTTCTAACCGCAGACCAACCGCCAGCACATTA 839
Query 840 CTACATGGCAGCACATGCCTACAACAGTGCCAATGCTGCCTTTGACAACACCACAACCAC 899
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 CTACATGGCAGCACATGCCTACAACAGTGCCAACGCTGCCTTTGACAACACCACAACCAC 899
Query 900 CGCAATCCTCAAGTACAAAGACGCCTCCTGTGTTACTCTTCAAGCTAAATCACAGGCACG 959
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 900 TGCAATCCTCAAGTACAAAGATGCCTCCTGTGTTACTCTTCAAGGTAAATCACAGGCACA 959
Query 960 GGCAATACCCGCACAACTACCAGGATTCAACGACACAGCAACAGCAGCAGCCTTCACAGC 1019
||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 GGCAATACCTGCACAGCTGCCAGGATTCAACGACACAGCAACAGCAGCAGCATTCACAGC 1019
Query 1020 GCAGATGAAGAGTCCTTCGAAAGTAAAAGTGCCCCTGGAGATTGATGAGAACTTGTTTTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCAGATGAAGAGTCCTTCGAAAGTAAAAGTGCCCCTGGAGATTGATGAGAACTTGTTTTT 1079
Query 1080 CACAGTGGGATTGGGACTATTCAACTGCCCAACCCCCAACACACAAAGGTGTCAAGGCCC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CACAGTGGGATTGGGACTATTCAACTGCCCAACCCCCAACACACAAAGGTGTCAAGGCCC 1139
Query 1140 TAACGGAACACGCTTCACCGCAAGCATCAACAATGTCTCTTTCGTCTTCCCCAAACAAAA 1199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAACGGAACACGCTTCACCGCGAGCATCAACAATGTCTCTTTCGTCTTCCCCAAACAAAA 1199
Query 1200 CTCCATAATGCAAGCCTATTACCAAGGCACTCCCACAGGTGTTTTCACCACAGACTTCCC 1259
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1200 CTCCATAATGCAAGCGTATTACCAAGGCACTCCCGCAGGTGTTTTCACCACAGACTTCCC 1259
Query 1260 TCCAACGCCTCCTGTCACATTTGACTATACAGGAAACGTGAGCAGAGGGCTATGGCAGCC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1260 TCCAACGCCTCCTGTCACATTTGACTATACAGGAAACGTGAGCAGAGGGCTATGGCAACC 1319
Query 1320 TACTCGCGGAACAAAGGCCTACAAACTAAAGTTCAATTCGCAAGTGCAGATTATATTGCA 1379
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1320 TACCCGCGGAACAAAGGCCTACAAACTAAAGTTCAATTCAAAAGTGCAGATTATATTGCA 1379
Query 1380 AGACACGAGCATCGTGACCACTGAGAATCACCCAATGCATCTCCATGGCTACGAGTTCTA 1439
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1380 AGACACGAGCATCGTGACCACTGAGAATCACCCTATGCATCTCCACGGCTACGAGTTCTA 1439
Query 1440 CGTAGTTGGGACAGGTGTTGGTAACTTCAACCCAAATACAGACACATCCTCCTTTAACCT 1499
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1440 CGTAGTTGGGACAGGTGTTGGTAACTTCAACCCAAATACAGACACAGCTTCCTTTAACCT 1499
Query 1500 CATCGACCCACCACGAAGAAACACAATCGGAACACCTCCAGGTGGATGGGTAGCCATCAG 1559
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1500 CATCGACCCACCACGAAGAAACACAATCGGAACACCACCAGGCGGATGGGTAGCCATCAG 1559
Query 1560 ATTCGTTGCCAATAATCCAGGAGCGTGGCTGATGCACTGCCACATTGACTCACATATATT 1619
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1560 ATTCGTGGCGAATAATCCAGGAGCGTGGCTGATGCACTGCCACATCGACTCACATATATT 1619
Query 1620 CTGGGGTTTAGCAATGGTCTTCTTAGTAGAGAACGGAGAAGGACATTTGCAGTCTGTACA 1679
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1620 CTGGGGTTTAGCAATGGTCTTCTTAGTGGAGAACGGAGAAGGGCATTTGCAATCTGTACA 1679
Query 1680 GTCTCCACCATTGGACTTACCCCAATGTTAA 1710
|||||||||||||||||||||||||||||||
Sbjct 1680 GTCTCCACCATTGGACTTACCCCAATGTTAA 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67762545855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5