BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G07140.1
Length=2200
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487536 jgi|Araly1|487536|fgenesh2_kg.6__670__AT5G07140.1 3282 0.0
> Ahg487536 jgi|Araly1|487536|fgenesh2_kg.6__670__AT5G07140.1
Length=2158
Score = 3282 bits (1777), Expect = 0.0
Identities = 2042/2169 (94%), Gaps = 21/2169 (1%)
Strand=Plus/Plus
Query 10 TTTTCAAGTAGAAGAGACACAAACATCGTTACCTTCGCCGCCATGGCCTCCGCACTCGAA 69
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCAAGTAGAAGAGACCCAAACTTCGTTACCTTCGCCGCCATGGCCTCCGCACTCGAA 60
Query 70 TGCTGGACAACACGTAATGCCGCCGGTGGTTGCGCCGACGACGATTTTGTTGACCAAGTC 129
|||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 61 TGCTGGACCACCCGTAATGCCGATGGTGGTTGCGCCGACGACGATTTCGTTGACCAAGTC 120
Query 130 CTAATGTCCTCCGAAGACAGGTCTGAGTCCCTCACTGCTCCTCCACCTTCCGATCAAACC 189
|| |||| ||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 CTCATGTGCTCTGACGACAGGTCTGAGTCCCTCACTGCTGCTCCACCTTCCGATCAAACC 180
Query 190 TCTTCCGCTATGCAAAAGCGGTTTCAGCGTCTCGGCCGCAACGTCTCCGACGCGATCGCG 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTTCCGCTATGCAAAAGCGGTTTCAGCGTCTCGGCCGCAACGTCTCCGACGCGATCGCG 240
Query 250 TCGCTCAAGAACTCTCTCAACCTCGATTCGAGTCGAGACAACCAAAATGCAGCTACCGGA 309
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 241 TCTCTCAAGAACTCTCTCAACCTCGATTCGGGTCGAGACAACCAAAATGCAGCCACCGGA 300
Query 310 GGAGGTAGAAAGCTCGTATGGGCTACTGTAGTGAGAAACCTTGCTAAAATGTATCCTGGA 369
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 301 GGAGGTAGGAAGCTCGTATGGGCCACTGTTGTGAGAAACCTTGCTAAAATGTATCCCGGA 360
Query 370 AGCCAGTTGCCTGATAAACTCGTCTCCAATCTCCGAAAGCATTACGATTCTTTGCCTCTC 429
|| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 361 AGTCAGTTGCCTGATAAACTCGTCTCTAACCTCCGGAAGCATTACGATTCTTTGCCTCTC 420
Query 430 AGTTATAGTCAGACTGGTTTCGATATGAAAGATGTATTTGTACACATAAAGTTGATAGAG 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGTTATAGTCAGACTGGTTTCGATATGAAAGATGTATTTGTACACATAAAGTTGATAGAG 480
Query 490 CAAGCTTTTGGAGATGATAATCCTGTGTTTGTGATTCAAGAGGTGTGTGATGAGGAAGCT 549
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 CAAGCTTCTGGAGATGATAATCCTGTGTTTTTGATTCAAGAGGTGTGTGATGAGGAAGCT 540
Query 550 GATGATCAGGGTTCTGTGTTTAAGCTCACATTTGCTTGTACTTGTTCCCTTCCATGGTCA 609
|||| |||||||||||||| |||||||||||||||| ||||| ||| ||||| ||||||
Sbjct 541 TATGAGCAGGGTTCTGTGTTCAAGCTCACATTTGCTTCTACTTCTTCGCTTCCGTGGTCA 600
Query 610 ACCATTTCAGGGTCTCTTGATGGTGCTTTGATTTGTTGTAAGAAAGTACAAATCTTTGAG 669
||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct 601 ACCATTTCAGGGTCTCTTGATTGTGCTTCGATTTGTTGTAAGAAAGTACAAATATTTGAG 660
Query 670 AAGAAGGGGTTGACTCTTGGAGTTGTTCTTCTTCTGGTTGAGTCTGGACAAGAAAAAATG 729
||||| ||||||||||| ||||||||||||||| |||| |||||||||||||| || ||
Sbjct 661 AAGAAAGGGTTGACTCTCGGAGTTGTTCTTCTTTTGGTAGAGTCTGGACAAGAGAAGTTG 720
Query 730 TTCAAAGTTAAGGTTGTGAATGCCCTTAGATCTGCGGTGAGGAAGCCCAAGTCAACCTCT 789
|||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 TTCAAAATTAAGGTAGAGAATGCCCTTAGATCTGCGGTGAGGAAGCCTAAGTCAACCTCT 780
Query 790 GTGAAGCTCCCATTTGGTCTTTGTGGCTGTGAAGAACAGAATGCTGGTGTTGGAGAATTC 849
||||||||||| ||||||||||| || ||| ||||||||||||| ||||| |||||||||
Sbjct 781 GTGAAGCTCCCTTTTGGTCTTTGCGGTTGTCAAGAACAGAATGCGGGTGTAGGAGAATTC 840
Query 850 GGGGATGTTGATGTGGAGTCCATTGATCAATGTTATAGACATGAGTTGGATGATCTGAAT 909
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 841 GGGGATGTTGATGTGGAGTCCATTGATCAATGCTATAGACACGAATTGGATGATCTGAAT 900
Query 910 ACTAGGATTCAGCTTCAAATGCCACCTCCAAGCTCTTCGTTTTCTGTATCAGTAGATGAA 969
|||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 901 ACTAGGATCCAGCTGCAAATGCCACCTCCAAGCTCTTCGTTTTCTGTATCTGTGGATGAA 960
Query 970 TGGCAGACTATCCAATCAGGTGGTGATGATATCAG-AAAATGGCTACTGAATTCAGATGA 1028
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 961 TGGCAGACCATCCAATCAGGTGGTGATGATAT-AGGAAAATGGCTACTGAATTCAGATGA 1019
Query 1029 TCTCGAGTTTAGTGGTCAGTTAGGACCAAATTCATTTAAAGGAGTTTACAGAGGAA-CAA 1087
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1020 TCTCGAGTTTGGTGGTCAGTTAGGACCAAATTCTTTTAAAGGAGTTTACAGAGGAATCAA 1079
Query 1088 AGGTGGCCATTGAGAAACTAAAAGGCTGTGAGAAGGGGAATTCCTATGAGTTTGCA-ATC 1146
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||
Sbjct 1080 -GGTGGCCATTGAGAAACTAAAAGGCTGTGAAAAGGGAAATTCCTATGAGTTTG-AGATC 1137
Query 1147 CGAAAAGATTTCTTGGAGCTGATGACCTGTGGACACAAGAGCATTTTGCAGTTTTATGGT 1206
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1138 CGAAAAGATTTCTTGGAGCTGATGACCTGTGGACACAAGAGCATTCTGCAGTTTTATGGT 1197
Query 1207 GTCTGCATCGATGAAAATCATGGATTATGCGTGGTAACAAAGTTGATGCAAGGTGGTTCA 1266
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1198 GTCTGCATCGACGAAAATCATGGATTATGCGTGGTAACAAAGTTGATGCAAGGTGGCTCA 1257
Query 1267 CTTCGTGAACTGGTGTTGAAGAAAAAGAAGCTTCAGACCAAGTTGATATTTCAAATTGCT 1326
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1258 CTCCGTGAACTGGTGTTGAAGAAAAAGAAGCTTCAGACCAAGGTGATATTTCAAATTGCT 1317
Query 1327 GTTGACATAGCAGAAGGGATGAAATTCATTAATGATCATGGTGTTGCATATAGAGACCTT 1386
|||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1318 GTTGACATAGCAGAAGCTATGAAGTTCATTAACGATCATGGTGTCGCATATAGAGACCTT 1377
Query 1387 AACACACAGAGAATACTATTAGATAAGCAGTGCAACGCTTGTTTGGGTGATTTGGGAATA 1446
|||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 1378 AACACACAAAGAATACTATTAGATAAGCAGGGCAACGCCTGTTTGGGTGATTTGGGAGTA 1437
Query 1447 GTCACTGCATGCAAGAGTGTCAACGAGGCCATGGAGTATGAAACGGATGGCTATCGATGG 1506
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1438 GTCACTGCATGCAAGAGTGTCAGCGAGGCCATGGAGTATGAAACAGATGGCTATCGATGG 1497
Query 1507 CTTGCACCCGAGATAATCGCGGGAGACCCGGAGAAGACAAGAGAGAGTTGGATGAGCAAT 1566
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1498 CTTGCACCCGAGATAATCGCGGGCGACCCGGAGAAGACAAGAGAGAGTTGGATGAGCAAT 1557
Query 1567 GCGTATAGCTTTGGGATGGTGCTTTGGGAGATGGTGACAGGGGAGGAGGCATATGGGTCT 1626
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1558 GCGTATAGCTTTGGGATGGTGCTTTGGGAGATGGTGACAGGGGAGGAGGCGTATGGGTCT 1617
Query 1627 TGCTCACCAGTGCAGGCAGCGGTTGGGATTGCAGCGTGCGGACTAAGACCAGATATCCCA 1686
||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1618 TGCTCGCCAGTGCAGGCAGCGGTTGGGATTGCAGCGTGTGGGCTAAGACCAGAGATCCCA 1677
Query 1687 AAGGAGTGTCCTCAAGTCCTCAAATATCTTATGATCAAATGCTGGAACACTTGCCCTTCC 1746
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1678 AAGGAGTGTCCTCAAGTCCTCAGATATCTTATGACCAAATGCTGGAACACTTGCCCTTCC 1737
Query 1747 ACACGCCTTAACTTCTCTCAAATCCACTGCATCTTGCTCCGTGCCATTTCACGGTAACAC 1806
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1738 ACACGCCTTAACTTCTCTCAAATCCACTGCATCTTGCTCCGTGCCATCTCACGGTAACAC 1797
Query 1807 ATTCTCTTCTACATAGGAATTGGAAGAGTGCCTC-TTTTT-GAAGAAATGTTT-AGCAAA 1863
| |||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||
Sbjct 1798 ACTCTCTTCTACATAGGAATTGGAAGAGTGCCTCCTTTTTTGAAGAAATCTTTTAGCAAA 1857
Query 1864 CCAATAGTTTTTGTGGGTAACAGAATAGCTTCACATCAATATAGCAAATG-TGATGAAGA 1922
|||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1858 CCAATAGTTTTTGTAGGTAAGAGAATAGCTTCACATCAATATAGCAA-TGGTGATGAAGA 1916
Query 1923 AAGTGGTTGGTGTATATTTTGGTTAGATCAGATGGTAGCAACCTTGTGGACCGGAAAGTA 1982
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 AAGTGGTTGGTGTATATTT-GGTTAGATCAGATGGTAGCAACCTTGTGGACCGGAAAGTA 1975
Query 1983 GAATAACAGTTTCATTATCA-GTTATAAGCCTCTTTGCCCA-GTCCACTTTCATTTTTAC 2040
|| |||||| |||||||| | || |||||||||||||| | | ||||||||||||||||
Sbjct 1976 GAGTAACAGATTCATTATAAAGTC-TAAGCCTCTTTGCCAATGCCCACTTTCATTTTTAC 2034
Query 2041 ACTTTGTTTACATTGTAAATGGACCAATATGAGTGAt-tttttttcttttctttttCTAT 2099
||||||||||||||||||||||||||||||||||||| |||||||||| | || |
Sbjct 2035 ACTTTGTTTACATTGTAAATGGACCAATATGAGTGATCTTTTTTTCTTATAATT----A- 2089
Query 2100 AAGAAAAAACAGGTACGAATGTTCGATTTCAAACTAGAACTGTTCAAGATTGTGTATGGA 2159
||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct 2090 AAGAAAAAACAGGTACGAATGTTAGATTTCAAATTAGAAATGTTCAAGATTGTGTATGGA 2149
Query 2160 TTGGATCCT 2168
|||| ||||
Sbjct 2150 TTGGCTCCT 2158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82808192630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5